Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1571

Experiment: KB with L-alliin 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1569 and Psyr_1570 are separated by 66 nucleotidesPsyr_1570 and Psyr_1571 overlap by 4 nucleotidesPsyr_1571 and Psyr_1572 are separated by 86 nucleotidesPsyr_1572 and Psyr_1573 are separated by 66 nucleotides Psyr_1569: Psyr_1569 - conserved hypothetical protein, at 1,764,252 to 1,764,752 _1569 Psyr_1570: Psyr_1570 - Copper resistance B precursor, at 1,764,819 to 1,765,727 _1570 Psyr_1571: Psyr_1571 - Twin-arginine translocation pathway signal:Copper-resistance protein CopA, at 1,765,724 to 1,767,502 _1571 Psyr_1572: Psyr_1572 - HNH endonuclease, at 1,767,589 to 1,767,963 _1572 Psyr_1573: Psyr_1573 - cyclic nucleotide-binding protein, at 1,768,030 to 1,768,506 _1573 Position (kb) 1765 1766 1767 1768Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1764.783 kb on + strandat 1764.785 kb on + strandat 1764.785 kb on + strandat 1764.785 kb on + strandat 1764.785 kb on + strandat 1764.785 kb on + strandat 1764.785 kb on + strandat 1764.786 kb on - strandat 1764.786 kb on - strandat 1764.805 kb on - strandat 1764.887 kb on - strandat 1764.932 kb on - strand, within Psyr_1570at 1764.932 kb on - strand, within Psyr_1570at 1764.932 kb on - strand, within Psyr_1570at 1765.087 kb on + strand, within Psyr_1570at 1765.346 kb on + strand, within Psyr_1570at 1765.432 kb on + strand, within Psyr_1570at 1765.432 kb on + strand, within Psyr_1570at 1765.432 kb on + strand, within Psyr_1570at 1765.433 kb on - strand, within Psyr_1570at 1765.433 kb on - strand, within Psyr_1570at 1765.480 kb on + strand, within Psyr_1570at 1765.481 kb on - strand, within Psyr_1570at 1765.481 kb on - strand, within Psyr_1570at 1765.770 kb on + strandat 1765.770 kb on + strandat 1765.788 kb on + strandat 1765.789 kb on - strandat 1765.977 kb on + strand, within Psyr_1571at 1765.977 kb on + strand, within Psyr_1571at 1765.977 kb on + strand, within Psyr_1571at 1765.977 kb on + strand, within Psyr_1571at 1765.978 kb on - strand, within Psyr_1571at 1765.978 kb on - strand, within Psyr_1571at 1765.978 kb on - strand, within Psyr_1571at 1765.978 kb on - strand, within Psyr_1571at 1766.034 kb on + strand, within Psyr_1571at 1766.035 kb on - strand, within Psyr_1571at 1766.035 kb on - strand, within Psyr_1571at 1766.124 kb on + strand, within Psyr_1571at 1766.124 kb on + strand, within Psyr_1571at 1766.125 kb on - strand, within Psyr_1571at 1766.125 kb on - strand, within Psyr_1571at 1766.125 kb on - strand, within Psyr_1571at 1766.125 kb on - strand, within Psyr_1571at 1766.518 kb on + strand, within Psyr_1571at 1766.519 kb on - strand, within Psyr_1571at 1766.519 kb on - strand, within Psyr_1571at 1766.519 kb on - strand, within Psyr_1571at 1766.519 kb on - strand, within Psyr_1571at 1766.520 kb on + strand, within Psyr_1571at 1766.521 kb on - strand, within Psyr_1571at 1766.647 kb on + strand, within Psyr_1571at 1766.661 kb on + strand, within Psyr_1571at 1766.760 kb on + strand, within Psyr_1571at 1766.760 kb on + strand, within Psyr_1571at 1766.760 kb on + strand, within Psyr_1571at 1766.766 kb on + strand, within Psyr_1571at 1766.767 kb on - strand, within Psyr_1571at 1766.767 kb on - strand, within Psyr_1571at 1766.767 kb on - strand, within Psyr_1571at 1766.767 kb on - strand, within Psyr_1571at 1766.907 kb on + strand, within Psyr_1571at 1766.907 kb on + strand, within Psyr_1571at 1766.907 kb on + strand, within Psyr_1571at 1766.908 kb on - strand, within Psyr_1571at 1766.908 kb on - strand, within Psyr_1571at 1766.908 kb on - strand, within Psyr_1571at 1766.910 kb on + strand, within Psyr_1571at 1766.910 kb on + strand, within Psyr_1571at 1767.081 kb on + strand, within Psyr_1571at 1767.087 kb on + strand, within Psyr_1571at 1767.087 kb on + strand, within Psyr_1571at 1767.088 kb on - strand, within Psyr_1571at 1767.088 kb on - strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.123 kb on + strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.124 kb on - strand, within Psyr_1571at 1767.354 kb on + strandat 1767.354 kb on + strandat 1767.354 kb on + strandat 1767.354 kb on + strandat 1767.354 kb on + strandat 1767.354 kb on + strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.355 kb on - strandat 1767.683 kb on + strand, within Psyr_1572at 1767.683 kb on + strand, within Psyr_1572at 1767.683 kb on + strand, within Psyr_1572at 1767.684 kb on - strand, within Psyr_1572at 1767.684 kb on - strand, within Psyr_1572at 1767.725 kb on + strand, within Psyr_1572at 1767.725 kb on + strand, within Psyr_1572at 1767.726 kb on - strand, within Psyr_1572at 1767.793 kb on + strand, within Psyr_1572at 1767.794 kb on - strand, within Psyr_1572at 1767.858 kb on - strand, within Psyr_1572at 1767.858 kb on - strand, within Psyr_1572at 1767.858 kb on - strand, within Psyr_1572at 1767.937 kb on - strandat 1768.048 kb on + strandat 1768.048 kb on + strandat 1768.049 kb on - strandat 1768.049 kb on - strandat 1768.049 kb on - strandat 1768.049 kb on - strandat 1768.049 kb on - strandat 1768.194 kb on + strand, within Psyr_1573at 1768.194 kb on + strand, within Psyr_1573at 1768.195 kb on - strand, within Psyr_1573at 1768.195 kb on - strand, within Psyr_1573at 1768.389 kb on + strand, within Psyr_1573at 1768.401 kb on - strand, within Psyr_1573at 1768.414 kb on - strand, within Psyr_1573

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with L-alliin 10 mM
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1,764,783 + -0.1
1,764,785 + -2.3
1,764,785 + +0.2
1,764,785 + +0.1
1,764,785 + -0.1
1,764,785 + +0.4
1,764,785 + +0.9
1,764,786 - +0.7
1,764,786 - +0.5
1,764,805 - +1.1
1,764,887 - -0.9
1,764,932 - Psyr_1570 0.12 -0.0
1,764,932 - Psyr_1570 0.12 +2.1
1,764,932 - Psyr_1570 0.12 -0.5
1,765,087 + Psyr_1570 0.29 +1.0
1,765,346 + Psyr_1570 0.58 -0.4
1,765,432 + Psyr_1570 0.67 -0.1
1,765,432 + Psyr_1570 0.67 +0.4
1,765,432 + Psyr_1570 0.67 -0.1
1,765,433 - Psyr_1570 0.68 -0.2
1,765,433 - Psyr_1570 0.68 +0.6
1,765,480 + Psyr_1570 0.73 +0.1
1,765,481 - Psyr_1570 0.73 +1.9
1,765,481 - Psyr_1570 0.73 -1.0
1,765,770 + +0.7
1,765,770 + -0.6
1,765,788 + -1.4
1,765,789 - +1.7
1,765,977 + Psyr_1571 0.14 +1.3
1,765,977 + Psyr_1571 0.14 -1.4
1,765,977 + Psyr_1571 0.14 +0.6
1,765,977 + Psyr_1571 0.14 -1.1
1,765,978 - Psyr_1571 0.14 +0.5
1,765,978 - Psyr_1571 0.14 -0.7
1,765,978 - Psyr_1571 0.14 -0.8
1,765,978 - Psyr_1571 0.14 +0.3
1,766,034 + Psyr_1571 0.17 +0.7
1,766,035 - Psyr_1571 0.17 -0.7
1,766,035 - Psyr_1571 0.17 -0.0
1,766,124 + Psyr_1571 0.22 -1.6
1,766,124 + Psyr_1571 0.22 +0.1
1,766,125 - Psyr_1571 0.23 -0.3
1,766,125 - Psyr_1571 0.23 +1.2
1,766,125 - Psyr_1571 0.23 +2.1
1,766,125 - Psyr_1571 0.23 -0.3
1,766,518 + Psyr_1571 0.45 +0.6
1,766,519 - Psyr_1571 0.45 -0.5
1,766,519 - Psyr_1571 0.45 -1.3
1,766,519 - Psyr_1571 0.45 -0.3
1,766,519 - Psyr_1571 0.45 -1.0
1,766,520 + Psyr_1571 0.45 -0.8
1,766,521 - Psyr_1571 0.45 -1.9
1,766,647 + Psyr_1571 0.52 +0.7
1,766,661 + Psyr_1571 0.53 +0.9
1,766,760 + Psyr_1571 0.58 +0.5
1,766,760 + Psyr_1571 0.58 -0.3
1,766,760 + Psyr_1571 0.58 -2.8
1,766,766 + Psyr_1571 0.59 +0.9
1,766,767 - Psyr_1571 0.59 +1.1
1,766,767 - Psyr_1571 0.59 -0.6
1,766,767 - Psyr_1571 0.59 +0.5
1,766,767 - Psyr_1571 0.59 -0.3
1,766,907 + Psyr_1571 0.66 +1.1
1,766,907 + Psyr_1571 0.66 +0.7
1,766,907 + Psyr_1571 0.66 -1.3
1,766,908 - Psyr_1571 0.67 -0.8
1,766,908 - Psyr_1571 0.67 -0.4
1,766,908 - Psyr_1571 0.67 -0.7
1,766,910 + Psyr_1571 0.67 +0.4
1,766,910 + Psyr_1571 0.67 -1.6
1,767,081 + Psyr_1571 0.76 -2.0
1,767,087 + Psyr_1571 0.77 +1.1
1,767,087 + Psyr_1571 0.77 +2.4
1,767,088 - Psyr_1571 0.77 -2.2
1,767,088 - Psyr_1571 0.77 -1.1
1,767,123 + Psyr_1571 0.79 +0.2
1,767,123 + Psyr_1571 0.79 -0.5
1,767,123 + Psyr_1571 0.79 -0.5
1,767,123 + Psyr_1571 0.79 +0.4
1,767,123 + Psyr_1571 0.79 +0.4
1,767,123 + Psyr_1571 0.79 +0.5
1,767,123 + Psyr_1571 0.79 +0.2
1,767,123 + Psyr_1571 0.79 +0.4
1,767,123 + Psyr_1571 0.79 +1.4
1,767,123 + Psyr_1571 0.79 -0.6
1,767,123 + Psyr_1571 0.79 -0.1
1,767,123 + Psyr_1571 0.79 +3.1
1,767,123 + Psyr_1571 0.79 +1.5
1,767,123 + Psyr_1571 0.79 -2.3
1,767,123 + Psyr_1571 0.79 +0.4
1,767,123 + Psyr_1571 0.79 +1.2
1,767,123 + Psyr_1571 0.79 -0.2
1,767,123 + Psyr_1571 0.79 -1.8
1,767,123 + Psyr_1571 0.79 -1.0
1,767,123 + Psyr_1571 0.79 -2.3
1,767,123 + Psyr_1571 0.79 -0.2
1,767,123 + Psyr_1571 0.79 +0.1
1,767,123 + Psyr_1571 0.79 +0.0
1,767,123 + Psyr_1571 0.79 +1.0
1,767,123 + Psyr_1571 0.79 -0.5
1,767,123 + Psyr_1571 0.79 -0.6
1,767,123 + Psyr_1571 0.79 +0.9
1,767,123 + Psyr_1571 0.79 -0.7
1,767,123 + Psyr_1571 0.79 -0.3
1,767,123 + Psyr_1571 0.79 -1.2
1,767,123 + Psyr_1571 0.79 +0.1
1,767,123 + Psyr_1571 0.79 -0.8
1,767,123 + Psyr_1571 0.79 +0.7
1,767,123 + Psyr_1571 0.79 +0.2
1,767,123 + Psyr_1571 0.79 -2.2
1,767,123 + Psyr_1571 0.79 -0.2
1,767,123 + Psyr_1571 0.79 -0.4
1,767,123 + Psyr_1571 0.79 +0.2
1,767,123 + Psyr_1571 0.79 -0.6
1,767,123 + Psyr_1571 0.79 +0.4
1,767,123 + Psyr_1571 0.79 -2.2
1,767,123 + Psyr_1571 0.79 +2.0
1,767,123 + Psyr_1571 0.79 +3.1
1,767,123 + Psyr_1571 0.79 +0.4
1,767,123 + Psyr_1571 0.79 +1.6
1,767,124 - Psyr_1571 0.79 +0.2
1,767,124 - Psyr_1571 0.79 +1.2
1,767,124 - Psyr_1571 0.79 +0.3
1,767,124 - Psyr_1571 0.79 -0.9
1,767,124 - Psyr_1571 0.79 -0.3
1,767,124 - Psyr_1571 0.79 -1.2
1,767,124 - Psyr_1571 0.79 +0.5
1,767,124 - Psyr_1571 0.79 +0.9
1,767,124 - Psyr_1571 0.79 -1.7
1,767,124 - Psyr_1571 0.79 +0.8
1,767,124 - Psyr_1571 0.79 -0.8
1,767,124 - Psyr_1571 0.79 +2.2
1,767,124 - Psyr_1571 0.79 -0.7
1,767,124 - Psyr_1571 0.79 +2.3
1,767,124 - Psyr_1571 0.79 -0.8
1,767,124 - Psyr_1571 0.79 +1.1
1,767,124 - Psyr_1571 0.79 +0.5
1,767,124 - Psyr_1571 0.79 +0.3
1,767,124 - Psyr_1571 0.79 -2.2
1,767,124 - Psyr_1571 0.79 +0.1
1,767,124 - Psyr_1571 0.79 +0.1
1,767,124 - Psyr_1571 0.79 -1.1
1,767,124 - Psyr_1571 0.79 +0.9
1,767,124 - Psyr_1571 0.79 +1.1
1,767,124 - Psyr_1571 0.79 -2.6
1,767,124 - Psyr_1571 0.79 -0.4
1,767,124 - Psyr_1571 0.79 -0.3
1,767,124 - Psyr_1571 0.79 +0.3
1,767,124 - Psyr_1571 0.79 +0.9
1,767,124 - Psyr_1571 0.79 -0.2
1,767,124 - Psyr_1571 0.79 +0.2
1,767,124 - Psyr_1571 0.79 +1.1
1,767,124 - Psyr_1571 0.79 +2.1
1,767,124 - Psyr_1571 0.79 -0.9
1,767,124 - Psyr_1571 0.79 -0.4
1,767,354 + +0.9
1,767,354 + +0.0
1,767,354 + -0.2
1,767,354 + +3.9
1,767,354 + -1.0
1,767,354 + +0.2
1,767,355 - +0.1
1,767,355 - +1.0
1,767,355 - +1.5
1,767,355 - +2.0
1,767,355 - -0.7
1,767,355 - +0.6
1,767,355 - +0.8
1,767,355 - -1.5
1,767,683 + Psyr_1572 0.25 -1.0
1,767,683 + Psyr_1572 0.25 -1.0
1,767,683 + Psyr_1572 0.25 -0.5
1,767,684 - Psyr_1572 0.25 -0.4
1,767,684 - Psyr_1572 0.25 +0.5
1,767,725 + Psyr_1572 0.36 +0.4
1,767,725 + Psyr_1572 0.36 -0.9
1,767,726 - Psyr_1572 0.37 +0.5
1,767,793 + Psyr_1572 0.54 +0.0
1,767,794 - Psyr_1572 0.55 -0.6
1,767,858 - Psyr_1572 0.72 -1.8
1,767,858 - Psyr_1572 0.72 -0.9
1,767,858 - Psyr_1572 0.72 -0.7
1,767,937 - -0.1
1,768,048 + -0.3
1,768,048 + -0.0
1,768,049 - -1.5
1,768,049 - -0.3
1,768,049 - -1.6
1,768,049 - +2.1
1,768,049 - +0.9
1,768,194 + Psyr_1573 0.34 -1.0
1,768,194 + Psyr_1573 0.34 +1.1
1,768,195 - Psyr_1573 0.35 -0.5
1,768,195 - Psyr_1573 0.35 +0.3
1,768,389 + Psyr_1573 0.75 +0.1
1,768,401 - Psyr_1573 0.78 +1.1
1,768,414 - Psyr_1573 0.81 +0.2

Or see this region's nucleotide sequence