Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3274

Experiment: KB with Terpene 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3272 and Psyr_3273 are separated by 13 nucleotidesPsyr_3273 and Psyr_3274 are separated by 58 nucleotidesPsyr_3274 and Psyr_3275 are separated by 328 nucleotides Psyr_3272: Psyr_3272 - 5-deoxyglucuronate isomerase, at 3,918,925 to 3,919,734 _3272 Psyr_3273: Psyr_3273 - 2-keto-myo-inositol dehydratase, at 3,919,748 to 3,920,653 _3273 Psyr_3274: Psyr_3274 - 5-dehydro-2-deoxygluconokinase, at 3,920,712 to 3,922,649 _3274 Psyr_3275: Psyr_3275 - Helix-turn-helix protein RpiR:Sugar isomerase (SIS), at 3,922,978 to 3,923,841 _3275 Position (kb) 3920 3921 3922 3923Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 3919.806 kb on + strandat 3919.806 kb on + strandat 3919.806 kb on + strandat 3919.806 kb on + strandat 3919.807 kb on - strandat 3919.807 kb on - strandat 3919.807 kb on - strandat 3920.023 kb on + strand, within Psyr_3273at 3920.023 kb on + strand, within Psyr_3273at 3920.024 kb on - strand, within Psyr_3273at 3920.073 kb on + strand, within Psyr_3273at 3920.073 kb on + strand, within Psyr_3273at 3920.073 kb on + strand, within Psyr_3273at 3920.073 kb on + strand, within Psyr_3273at 3920.073 kb on + strand, within Psyr_3273at 3920.073 kb on + strand, within Psyr_3273at 3920.074 kb on - strand, within Psyr_3273at 3920.074 kb on - strand, within Psyr_3273at 3920.074 kb on - strand, within Psyr_3273at 3920.074 kb on - strand, within Psyr_3273at 3920.238 kb on + strand, within Psyr_3273at 3920.325 kb on + strand, within Psyr_3273at 3920.325 kb on + strand, within Psyr_3273at 3920.326 kb on - strand, within Psyr_3273at 3920.462 kb on + strand, within Psyr_3273at 3920.463 kb on - strand, within Psyr_3273at 3920.463 kb on - strand, within Psyr_3273at 3920.463 kb on - strand, within Psyr_3273at 3920.790 kb on + strandat 3920.791 kb on - strandat 3920.791 kb on - strandat 3920.791 kb on - strandat 3921.040 kb on + strand, within Psyr_3274at 3921.040 kb on + strand, within Psyr_3274at 3921.040 kb on + strand, within Psyr_3274at 3921.041 kb on - strand, within Psyr_3274at 3921.149 kb on - strand, within Psyr_3274at 3921.149 kb on - strand, within Psyr_3274at 3921.208 kb on + strand, within Psyr_3274at 3921.306 kb on + strand, within Psyr_3274at 3921.307 kb on - strand, within Psyr_3274at 3921.307 kb on - strand, within Psyr_3274at 3921.307 kb on - strand, within Psyr_3274at 3921.842 kb on + strand, within Psyr_3274at 3921.843 kb on - strand, within Psyr_3274at 3922.038 kb on + strand, within Psyr_3274at 3922.038 kb on + strand, within Psyr_3274at 3922.038 kb on + strand, within Psyr_3274at 3922.038 kb on + strand, within Psyr_3274at 3922.039 kb on - strand, within Psyr_3274at 3922.039 kb on - strand, within Psyr_3274at 3922.039 kb on - strand, within Psyr_3274at 3922.039 kb on - strand, within Psyr_3274at 3922.039 kb on - strand, within Psyr_3274at 3922.039 kb on - strand, within Psyr_3274at 3922.039 kb on - strand, within Psyr_3274at 3922.039 kb on - strand, within Psyr_3274at 3922.163 kb on - strand, within Psyr_3274at 3922.304 kb on - strand, within Psyr_3274at 3922.436 kb on + strand, within Psyr_3274at 3922.525 kb on + strandat 3922.525 kb on + strandat 3922.526 kb on - strandat 3922.526 kb on - strandat 3922.576 kb on + strandat 3922.697 kb on - strandat 3922.722 kb on - strandat 3922.722 kb on - strandat 3922.828 kb on + strandat 3922.828 kb on + strandat 3922.830 kb on + strandat 3922.830 kb on + strandat 3922.830 kb on + strandat 3922.831 kb on - strandat 3922.831 kb on - strandat 3922.831 kb on - strandat 3922.831 kb on - strandat 3922.831 kb on - strandat 3922.831 kb on - strandat 3922.932 kb on + strandat 3922.932 kb on + strandat 3922.933 kb on - strandat 3923.065 kb on + strand, within Psyr_3275at 3923.065 kb on + strand, within Psyr_3275at 3923.065 kb on + strand, within Psyr_3275at 3923.065 kb on + strand, within Psyr_3275at 3923.065 kb on + strand, within Psyr_3275at 3923.066 kb on - strand, within Psyr_3275at 3923.066 kb on - strand, within Psyr_3275at 3923.066 kb on - strand, within Psyr_3275at 3923.066 kb on - strand, within Psyr_3275at 3923.066 kb on - strand, within Psyr_3275at 3923.066 kb on - strand, within Psyr_3275at 3923.066 kb on - strand, within Psyr_3275at 3923.066 kb on - strand, within Psyr_3275at 3923.066 kb on - strand, within Psyr_3275at 3923.067 kb on + strand, within Psyr_3275at 3923.068 kb on - strand, within Psyr_3275at 3923.215 kb on + strand, within Psyr_3275at 3923.215 kb on + strand, within Psyr_3275at 3923.216 kb on - strand, within Psyr_3275at 3923.216 kb on - strand, within Psyr_3275at 3923.216 kb on - strand, within Psyr_3275at 3923.217 kb on + strand, within Psyr_3275at 3923.217 kb on + strand, within Psyr_3275at 3923.217 kb on + strand, within Psyr_3275at 3923.217 kb on + strand, within Psyr_3275at 3923.217 kb on + strand, within Psyr_3275at 3923.217 kb on + strand, within Psyr_3275at 3923.217 kb on + strand, within Psyr_3275at 3923.217 kb on + strand, within Psyr_3275at 3923.218 kb on - strand, within Psyr_3275at 3923.268 kb on + strand, within Psyr_3275at 3923.277 kb on + strand, within Psyr_3275at 3923.277 kb on + strand, within Psyr_3275at 3923.277 kb on + strand, within Psyr_3275at 3923.419 kb on + strand, within Psyr_3275at 3923.419 kb on + strand, within Psyr_3275at 3923.419 kb on + strand, within Psyr_3275at 3923.419 kb on + strand, within Psyr_3275at 3923.419 kb on + strand, within Psyr_3275at 3923.419 kb on + strand, within Psyr_3275at 3923.420 kb on - strand, within Psyr_3275at 3923.420 kb on - strand, within Psyr_3275at 3923.420 kb on - strand, within Psyr_3275at 3923.420 kb on - strand, within Psyr_3275at 3923.420 kb on - strand, within Psyr_3275at 3923.420 kb on - strand, within Psyr_3275at 3923.420 kb on - strand, within Psyr_3275at 3923.420 kb on - strand, within Psyr_3275at 3923.420 kb on - strand, within Psyr_3275at 3923.420 kb on - strand, within Psyr_3275at 3923.420 kb on - strand, within Psyr_3275at 3923.420 kb on - strand, within Psyr_3275at 3923.420 kb on - strand, within Psyr_3275at 3923.467 kb on + strand, within Psyr_3275at 3923.467 kb on + strand, within Psyr_3275at 3923.467 kb on + strand, within Psyr_3275at 3923.468 kb on - strand, within Psyr_3275

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Terpene 10 mM
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3,919,806 + +0.6
3,919,806 + -0.2
3,919,806 + +1.3
3,919,806 + +1.4
3,919,807 - -0.1
3,919,807 - +0.1
3,919,807 - -0.1
3,920,023 + Psyr_3273 0.30 +0.3
3,920,023 + Psyr_3273 0.30 -1.4
3,920,024 - Psyr_3273 0.30 +0.6
3,920,073 + Psyr_3273 0.36 -0.2
3,920,073 + Psyr_3273 0.36 +0.5
3,920,073 + Psyr_3273 0.36 +0.5
3,920,073 + Psyr_3273 0.36 +3.1
3,920,073 + Psyr_3273 0.36 +1.9
3,920,073 + Psyr_3273 0.36 +1.5
3,920,074 - Psyr_3273 0.36 -0.4
3,920,074 - Psyr_3273 0.36 +0.2
3,920,074 - Psyr_3273 0.36 +1.2
3,920,074 - Psyr_3273 0.36 -0.2
3,920,238 + Psyr_3273 0.54 -0.9
3,920,325 + Psyr_3273 0.64 +0.3
3,920,325 + Psyr_3273 0.64 -1.5
3,920,326 - Psyr_3273 0.64 -0.1
3,920,462 + Psyr_3273 0.79 +0.4
3,920,463 - Psyr_3273 0.79 +0.2
3,920,463 - Psyr_3273 0.79 +1.3
3,920,463 - Psyr_3273 0.79 -1.3
3,920,790 + +0.3
3,920,791 - -1.6
3,920,791 - -0.9
3,920,791 - -1.2
3,921,040 + Psyr_3274 0.17 +1.1
3,921,040 + Psyr_3274 0.17 -0.0
3,921,040 + Psyr_3274 0.17 -1.9
3,921,041 - Psyr_3274 0.17 +2.0
3,921,149 - Psyr_3274 0.23 +2.1
3,921,149 - Psyr_3274 0.23 -0.0
3,921,208 + Psyr_3274 0.26 -1.1
3,921,306 + Psyr_3274 0.31 -1.9
3,921,307 - Psyr_3274 0.31 -1.8
3,921,307 - Psyr_3274 0.31 -0.0
3,921,307 - Psyr_3274 0.31 +1.3
3,921,842 + Psyr_3274 0.58 -2.3
3,921,843 - Psyr_3274 0.58 +0.6
3,922,038 + Psyr_3274 0.68 -0.1
3,922,038 + Psyr_3274 0.68 -0.7
3,922,038 + Psyr_3274 0.68 +1.6
3,922,038 + Psyr_3274 0.68 +0.5
3,922,039 - Psyr_3274 0.68 +0.1
3,922,039 - Psyr_3274 0.68 +0.6
3,922,039 - Psyr_3274 0.68 -0.7
3,922,039 - Psyr_3274 0.68 +1.4
3,922,039 - Psyr_3274 0.68 -0.1
3,922,039 - Psyr_3274 0.68 +0.8
3,922,039 - Psyr_3274 0.68 -0.2
3,922,039 - Psyr_3274 0.68 -0.3
3,922,163 - Psyr_3274 0.75 -0.1
3,922,304 - Psyr_3274 0.82 +0.8
3,922,436 + Psyr_3274 0.89 -0.0
3,922,525 + +0.0
3,922,525 + -1.2
3,922,526 - +0.4
3,922,526 - +0.3
3,922,576 + +2.1
3,922,697 - -1.2
3,922,722 - +0.8
3,922,722 - -0.3
3,922,828 + -0.9
3,922,828 + -0.3
3,922,830 + -2.3
3,922,830 + +0.5
3,922,830 + -0.5
3,922,831 - +1.7
3,922,831 - +0.8
3,922,831 - -1.4
3,922,831 - +0.6
3,922,831 - +1.6
3,922,831 - +1.4
3,922,932 + +0.4
3,922,932 + +2.1
3,922,933 - +0.0
3,923,065 + Psyr_3275 0.10 -0.2
3,923,065 + Psyr_3275 0.10 -0.5
3,923,065 + Psyr_3275 0.10 +1.0
3,923,065 + Psyr_3275 0.10 -0.3
3,923,065 + Psyr_3275 0.10 +1.5
3,923,066 - Psyr_3275 0.10 -0.2
3,923,066 - Psyr_3275 0.10 +0.5
3,923,066 - Psyr_3275 0.10 -0.7
3,923,066 - Psyr_3275 0.10 +0.1
3,923,066 - Psyr_3275 0.10 +1.1
3,923,066 - Psyr_3275 0.10 +4.1
3,923,066 - Psyr_3275 0.10 -0.9
3,923,066 - Psyr_3275 0.10 -0.1
3,923,066 - Psyr_3275 0.10 +2.3
3,923,067 + Psyr_3275 0.10 -0.5
3,923,068 - Psyr_3275 0.10 -1.7
3,923,215 + Psyr_3275 0.27 +0.4
3,923,215 + Psyr_3275 0.27 -2.7
3,923,216 - Psyr_3275 0.28 -0.9
3,923,216 - Psyr_3275 0.28 +0.9
3,923,216 - Psyr_3275 0.28 +0.6
3,923,217 + Psyr_3275 0.28 +0.6
3,923,217 + Psyr_3275 0.28 +0.8
3,923,217 + Psyr_3275 0.28 -1.8
3,923,217 + Psyr_3275 0.28 +0.2
3,923,217 + Psyr_3275 0.28 +0.8
3,923,217 + Psyr_3275 0.28 -1.0
3,923,217 + Psyr_3275 0.28 +2.1
3,923,217 + Psyr_3275 0.28 -0.2
3,923,218 - Psyr_3275 0.28 -2.2
3,923,268 + Psyr_3275 0.34 -0.2
3,923,277 + Psyr_3275 0.35 +1.3
3,923,277 + Psyr_3275 0.35 +2.4
3,923,277 + Psyr_3275 0.35 +0.4
3,923,419 + Psyr_3275 0.51 -0.6
3,923,419 + Psyr_3275 0.51 +0.5
3,923,419 + Psyr_3275 0.51 -0.5
3,923,419 + Psyr_3275 0.51 +0.3
3,923,419 + Psyr_3275 0.51 -0.1
3,923,419 + Psyr_3275 0.51 -0.9
3,923,420 - Psyr_3275 0.51 -2.7
3,923,420 - Psyr_3275 0.51 -0.5
3,923,420 - Psyr_3275 0.51 +0.5
3,923,420 - Psyr_3275 0.51 -1.6
3,923,420 - Psyr_3275 0.51 -1.2
3,923,420 - Psyr_3275 0.51 +1.3
3,923,420 - Psyr_3275 0.51 -0.7
3,923,420 - Psyr_3275 0.51 -1.6
3,923,420 - Psyr_3275 0.51 -1.2
3,923,420 - Psyr_3275 0.51 -0.6
3,923,420 - Psyr_3275 0.51 -0.1
3,923,420 - Psyr_3275 0.51 -1.2
3,923,420 - Psyr_3275 0.51 -0.3
3,923,467 + Psyr_3275 0.57 +0.5
3,923,467 + Psyr_3275 0.57 -1.1
3,923,467 + Psyr_3275 0.57 -0.0
3,923,468 - Psyr_3275 0.57 +0.3

Or see this region's nucleotide sequence