Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1668

Experiment: KB with Terpene 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1666 and Psyr_1667 are separated by 118 nucleotidesPsyr_1667 and Psyr_1668 are separated by 12 nucleotidesPsyr_1668 and Psyr_1669 are separated by 20 nucleotides Psyr_1666: Psyr_1666 - Sporulation related protein, at 1,871,083 to 1,871,736 _1666 Psyr_1667: Psyr_1667 - Colicin V production protein, at 1,871,855 to 1,872,442 _1667 Psyr_1668: Psyr_1668 - amidophosphoribosyltransferase, at 1,872,455 to 1,873,963 _1668 Psyr_1669: Psyr_1669 - O-succinylhomoserine sulfhydrylase, at 1,873,984 to 1,875,195 _1669 Position (kb) 1872 1873 1874Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1871.584 kb on + strand, within Psyr_1666at 1871.585 kb on - strand, within Psyr_1666at 1871.593 kb on + strand, within Psyr_1666at 1871.593 kb on + strand, within Psyr_1666at 1871.594 kb on - strand, within Psyr_1666at 1871.594 kb on - strand, within Psyr_1666at 1871.594 kb on - strand, within Psyr_1666at 1871.594 kb on - strand, within Psyr_1666at 1871.819 kb on + strandat 1871.819 kb on + strandat 1871.863 kb on + strandat 1871.863 kb on + strandat 1871.863 kb on + strandat 1871.864 kb on - strandat 1872.023 kb on + strand, within Psyr_1667at 1872.023 kb on + strand, within Psyr_1667at 1872.023 kb on + strand, within Psyr_1667at 1872.023 kb on + strand, within Psyr_1667at 1872.023 kb on + strand, within Psyr_1667at 1872.023 kb on + strand, within Psyr_1667at 1872.024 kb on - strand, within Psyr_1667at 1872.024 kb on - strand, within Psyr_1667at 1872.024 kb on - strand, within Psyr_1667at 1872.024 kb on - strand, within Psyr_1667at 1872.028 kb on - strand, within Psyr_1667at 1872.028 kb on - strand, within Psyr_1667at 1872.061 kb on + strand, within Psyr_1667at 1872.062 kb on - strand, within Psyr_1667at 1872.357 kb on + strand, within Psyr_1667at 1872.397 kb on + strandat 1872.398 kb on - strandat 1872.398 kb on - strandat 1872.632 kb on - strand, within Psyr_1668at 1873.062 kb on - strand, within Psyr_1668at 1873.223 kb on + strand, within Psyr_1668at 1873.265 kb on + strand, within Psyr_1668at 1873.266 kb on - strand, within Psyr_1668at 1873.437 kb on - strand, within Psyr_1668at 1873.847 kb on + strandat 1873.848 kb on - strandat 1873.848 kb on - strandat 1873.874 kb on + strandat 1873.952 kb on + strandat 1873.952 kb on + strandat 1873.952 kb on + strandat 1873.953 kb on - strandat 1873.961 kb on + strandat 1873.961 kb on + strandat 1873.961 kb on + strandat 1873.961 kb on + strandat 1873.962 kb on - strandat 1873.962 kb on - strandat 1873.962 kb on - strandat 1873.962 kb on - strandat 1873.962 kb on - strandat 1874.033 kb on + strandat 1874.054 kb on + strandat 1874.054 kb on + strandat 1874.054 kb on + strandat 1874.119 kb on + strand, within Psyr_1669at 1874.120 kb on - strand, within Psyr_1669at 1874.120 kb on - strand, within Psyr_1669at 1874.123 kb on + strand, within Psyr_1669at 1874.123 kb on + strand, within Psyr_1669at 1874.123 kb on + strand, within Psyr_1669at 1874.123 kb on + strand, within Psyr_1669at 1874.123 kb on + strand, within Psyr_1669at 1874.123 kb on + strand, within Psyr_1669at 1874.123 kb on + strand, within Psyr_1669at 1874.123 kb on + strand, within Psyr_1669at 1874.123 kb on + strand, within Psyr_1669at 1874.124 kb on - strand, within Psyr_1669at 1874.191 kb on + strand, within Psyr_1669at 1874.377 kb on + strand, within Psyr_1669at 1874.377 kb on + strand, within Psyr_1669at 1874.377 kb on + strand, within Psyr_1669at 1874.377 kb on + strand, within Psyr_1669at 1874.378 kb on - strand, within Psyr_1669at 1874.378 kb on - strand, within Psyr_1669at 1874.378 kb on - strand, within Psyr_1669at 1874.407 kb on + strand, within Psyr_1669at 1874.407 kb on + strand, within Psyr_1669at 1874.407 kb on + strand, within Psyr_1669at 1874.407 kb on + strand, within Psyr_1669at 1874.408 kb on - strand, within Psyr_1669at 1874.408 kb on - strand, within Psyr_1669at 1874.408 kb on - strand, within Psyr_1669at 1874.616 kb on + strand, within Psyr_1669at 1874.616 kb on + strand, within Psyr_1669at 1874.724 kb on + strand, within Psyr_1669

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Terpene 10 mM
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1,871,584 + Psyr_1666 0.77 -1.0
1,871,585 - Psyr_1666 0.77 +2.0
1,871,593 + Psyr_1666 0.78 -0.9
1,871,593 + Psyr_1666 0.78 +1.5
1,871,594 - Psyr_1666 0.78 -2.1
1,871,594 - Psyr_1666 0.78 +1.0
1,871,594 - Psyr_1666 0.78 -2.0
1,871,594 - Psyr_1666 0.78 -0.2
1,871,819 + -2.0
1,871,819 + +0.1
1,871,863 + -0.1
1,871,863 + -0.1
1,871,863 + +3.5
1,871,864 - -0.2
1,872,023 + Psyr_1667 0.29 -3.4
1,872,023 + Psyr_1667 0.29 +2.8
1,872,023 + Psyr_1667 0.29 +3.0
1,872,023 + Psyr_1667 0.29 -0.9
1,872,023 + Psyr_1667 0.29 -0.1
1,872,023 + Psyr_1667 0.29 +1.1
1,872,024 - Psyr_1667 0.29 +2.2
1,872,024 - Psyr_1667 0.29 -1.1
1,872,024 - Psyr_1667 0.29 -0.6
1,872,024 - Psyr_1667 0.29 -2.6
1,872,028 - Psyr_1667 0.29 +0.3
1,872,028 - Psyr_1667 0.29 -0.1
1,872,061 + Psyr_1667 0.35 -2.3
1,872,062 - Psyr_1667 0.35 +0.3
1,872,357 + Psyr_1667 0.85 +0.8
1,872,397 + +0.3
1,872,398 - -1.4
1,872,398 - +0.7
1,872,632 - Psyr_1668 0.12 +0.6
1,873,062 - Psyr_1668 0.40 +1.2
1,873,223 + Psyr_1668 0.51 -3.5
1,873,265 + Psyr_1668 0.54 +3.5
1,873,266 - Psyr_1668 0.54 +0.2
1,873,437 - Psyr_1668 0.65 +0.5
1,873,847 + +1.4
1,873,848 - -1.4
1,873,848 - +0.3
1,873,874 + -0.5
1,873,952 + -0.1
1,873,952 + +0.5
1,873,952 + -0.2
1,873,953 - -0.9
1,873,961 + +0.6
1,873,961 + -0.9
1,873,961 + +0.3
1,873,961 + +1.7
1,873,962 - -0.5
1,873,962 - +1.2
1,873,962 - -0.7
1,873,962 - +0.3
1,873,962 - +2.2
1,874,033 + -0.3
1,874,054 + +0.8
1,874,054 + -0.3
1,874,054 + +0.7
1,874,119 + Psyr_1669 0.11 -2.3
1,874,120 - Psyr_1669 0.11 -0.2
1,874,120 - Psyr_1669 0.11 +1.2
1,874,123 + Psyr_1669 0.11 +0.2
1,874,123 + Psyr_1669 0.11 -1.7
1,874,123 + Psyr_1669 0.11 +0.1
1,874,123 + Psyr_1669 0.11 -0.4
1,874,123 + Psyr_1669 0.11 -0.3
1,874,123 + Psyr_1669 0.11 +2.8
1,874,123 + Psyr_1669 0.11 +1.7
1,874,123 + Psyr_1669 0.11 -0.8
1,874,123 + Psyr_1669 0.11 -0.8
1,874,124 - Psyr_1669 0.12 +2.2
1,874,191 + Psyr_1669 0.17 -2.3
1,874,377 + Psyr_1669 0.32 +1.4
1,874,377 + Psyr_1669 0.32 +0.3
1,874,377 + Psyr_1669 0.32 +0.8
1,874,377 + Psyr_1669 0.32 +1.4
1,874,378 - Psyr_1669 0.33 +0.4
1,874,378 - Psyr_1669 0.33 +1.2
1,874,378 - Psyr_1669 0.33 -0.7
1,874,407 + Psyr_1669 0.35 +0.5
1,874,407 + Psyr_1669 0.35 -0.4
1,874,407 + Psyr_1669 0.35 +0.3
1,874,407 + Psyr_1669 0.35 -0.8
1,874,408 - Psyr_1669 0.35 -0.0
1,874,408 - Psyr_1669 0.35 +0.5
1,874,408 - Psyr_1669 0.35 +0.3
1,874,616 + Psyr_1669 0.52 +0.3
1,874,616 + Psyr_1669 0.52 +2.8
1,874,724 + Psyr_1669 0.61 +0.3

Or see this region's nucleotide sequence