Experiment: KB with Terpene 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1166 and Psyr_1167 are separated by 27 nucleotides Psyr_1167 and Psyr_1168 overlap by 8 nucleotides Psyr_1168 and Psyr_1169 are separated by 9 nucleotides
Psyr_1166: Psyr_1166 - Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase, at 1,319,643 to 1,320,659
_1166
Psyr_1167: Psyr_1167 - nucleoside ABC transporter membrane protein, at 1,320,687 to 1,321,607
_1167
Psyr_1168: Psyr_1168 - nucleoside ABC transporter membrane protein, at 1,321,600 to 1,322,709
_1168
Psyr_1169: Psyr_1169 - nucleoside-binding protein, at 1,322,719 to 1,323,828
_1169
Position (kb) 1321
1322
1323 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1320.751 kb on + strand at 1320.751 kb on + strand at 1320.751 kb on + strand at 1320.751 kb on + strand at 1320.752 kb on - strand at 1320.752 kb on - strand at 1320.752 kb on - strand at 1320.752 kb on - strand at 1320.775 kb on + strand at 1320.776 kb on - strand at 1320.776 kb on - strand at 1320.983 kb on - strand, within Psyr_1167 at 1320.983 kb on - strand, within Psyr_1167 at 1320.983 kb on - strand, within Psyr_1167 at 1321.671 kb on + strand at 1321.672 kb on - strand at 1322.072 kb on + strand, within Psyr_1168 at 1322.072 kb on + strand, within Psyr_1168 at 1322.072 kb on + strand, within Psyr_1168 at 1322.072 kb on + strand, within Psyr_1168 at 1322.072 kb on + strand, within Psyr_1168 at 1322.072 kb on + strand, within Psyr_1168 at 1322.072 kb on + strand, within Psyr_1168 at 1322.073 kb on - strand, within Psyr_1168 at 1322.073 kb on - strand, within Psyr_1168 at 1322.073 kb on - strand, within Psyr_1168 at 1322.073 kb on - strand, within Psyr_1168 at 1322.073 kb on - strand, within Psyr_1168 at 1322.073 kb on - strand, within Psyr_1168 at 1322.148 kb on + strand, within Psyr_1168 at 1322.148 kb on + strand, within Psyr_1168 at 1322.149 kb on - strand, within Psyr_1168 at 1322.149 kb on - strand, within Psyr_1168 at 1322.149 kb on - strand, within Psyr_1168 at 1322.149 kb on - strand, within Psyr_1168 at 1322.149 kb on - strand, within Psyr_1168 at 1322.149 kb on - strand, within Psyr_1168 at 1322.149 kb on - strand, within Psyr_1168 at 1322.149 kb on - strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.150 kb on + strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.151 kb on - strand, within Psyr_1168 at 1322.246 kb on + strand, within Psyr_1168 at 1322.247 kb on - strand, within Psyr_1168 at 1322.247 kb on - strand, within Psyr_1168 at 1322.695 kb on + strand at 1322.696 kb on - strand at 1323.054 kb on - strand, within Psyr_1169 at 1323.163 kb on + strand, within Psyr_1169 at 1323.164 kb on - strand, within Psyr_1169 at 1323.164 kb on - strand, within Psyr_1169 at 1323.387 kb on - strand, within Psyr_1169 at 1323.684 kb on - strand, within Psyr_1169
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Terpene 10 mM remove 1,320,751 + +0.0 1,320,751 + +0.9 1,320,751 + -1.1 1,320,751 + +1.1 1,320,752 - +1.3 1,320,752 - +0.6 1,320,752 - +1.1 1,320,752 - -0.2 1,320,775 + +0.3 1,320,776 - -0.1 1,320,776 - +0.8 1,320,983 - Psyr_1167 0.32 -0.9 1,320,983 - Psyr_1167 0.32 +2.7 1,320,983 - Psyr_1167 0.32 -0.6 1,321,671 + +0.2 1,321,672 - -0.0 1,322,072 + Psyr_1168 0.43 -1.9 1,322,072 + Psyr_1168 0.43 +0.8 1,322,072 + Psyr_1168 0.43 +0.3 1,322,072 + Psyr_1168 0.43 +0.3 1,322,072 + Psyr_1168 0.43 +0.1 1,322,072 + Psyr_1168 0.43 -0.9 1,322,072 + Psyr_1168 0.43 +0.0 1,322,073 - Psyr_1168 0.43 -0.0 1,322,073 - Psyr_1168 0.43 +0.3 1,322,073 - Psyr_1168 0.43 -3.2 1,322,073 - Psyr_1168 0.43 -0.4 1,322,073 - Psyr_1168 0.43 -0.4 1,322,073 - Psyr_1168 0.43 +4.1 1,322,148 + Psyr_1168 0.49 -1.9 1,322,148 + Psyr_1168 0.49 -0.3 1,322,149 - Psyr_1168 0.49 -0.3 1,322,149 - Psyr_1168 0.49 +1.1 1,322,149 - Psyr_1168 0.49 +1.1 1,322,149 - Psyr_1168 0.49 +0.5 1,322,149 - Psyr_1168 0.49 +0.7 1,322,149 - Psyr_1168 0.49 -0.3 1,322,149 - Psyr_1168 0.49 -0.9 1,322,149 - Psyr_1168 0.49 -0.3 1,322,150 + Psyr_1168 0.50 -0.3 1,322,150 + Psyr_1168 0.50 +0.8 1,322,150 + Psyr_1168 0.50 +0.0 1,322,150 + Psyr_1168 0.50 +1.6 1,322,150 + Psyr_1168 0.50 +0.8 1,322,150 + Psyr_1168 0.50 -0.3 1,322,150 + Psyr_1168 0.50 +0.9 1,322,150 + Psyr_1168 0.50 -0.1 1,322,150 + Psyr_1168 0.50 +1.4 1,322,150 + Psyr_1168 0.50 -0.2 1,322,150 + Psyr_1168 0.50 +0.6 1,322,150 + Psyr_1168 0.50 +0.5 1,322,150 + Psyr_1168 0.50 -0.7 1,322,150 + Psyr_1168 0.50 +0.6 1,322,151 - Psyr_1168 0.50 +3.1 1,322,151 - Psyr_1168 0.50 -2.0 1,322,151 - Psyr_1168 0.50 +0.6 1,322,151 - Psyr_1168 0.50 +0.4 1,322,151 - Psyr_1168 0.50 +0.1 1,322,151 - Psyr_1168 0.50 -1.1 1,322,151 - Psyr_1168 0.50 -0.6 1,322,151 - Psyr_1168 0.50 +1.1 1,322,246 + Psyr_1168 0.58 -0.2 1,322,247 - Psyr_1168 0.58 +0.3 1,322,247 - Psyr_1168 0.58 +0.7 1,322,695 + -1.0 1,322,696 - -0.5 1,323,054 - Psyr_1169 0.30 +2.1 1,323,163 + Psyr_1169 0.40 +3.1 1,323,164 - Psyr_1169 0.40 -1.0 1,323,164 - Psyr_1169 0.40 -2.1 1,323,387 - Psyr_1169 0.60 +0.8 1,323,684 - Psyr_1169 0.87 -0.0
Or see this region's nucleotide sequence