Experiment: KB with Piperine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_5050 and Psyr_5051 are separated by 267 nucleotides Psyr_5051 and Psyr_5052 are separated by 281 nucleotides
Psyr_5050: Psyr_5050 - transcriptional regulator, LysR family, at 5,990,865 to 5,991,812
_5050
Psyr_5051: Psyr_5051 - Aspartate ammonia-lyase, at 5,992,080 to 5,993,504
_5051
Psyr_5052: Psyr_5052 - Sodium:alanine symporter, at 5,993,786 to 5,995,237
_5052
Position (kb) 5992
5993
5994 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 5991.091 kb on + strand, within Psyr_5050 at 5991.092 kb on - strand, within Psyr_5050 at 5991.092 kb on - strand, within Psyr_5050 at 5991.316 kb on + strand, within Psyr_5050 at 5991.316 kb on + strand, within Psyr_5050 at 5991.316 kb on + strand, within Psyr_5050 at 5991.870 kb on - strand at 5991.870 kb on - strand at 5991.870 kb on - strand at 5991.870 kb on - strand at 5991.969 kb on - strand at 5991.969 kb on - strand at 5991.984 kb on - strand at 5992.031 kb on - strand at 5992.150 kb on - strand at 5992.150 kb on - strand at 5992.152 kb on + strand at 5992.153 kb on - strand at 5992.467 kb on + strand, within Psyr_5051 at 5992.467 kb on + strand, within Psyr_5051 at 5992.468 kb on - strand, within Psyr_5051 at 5992.944 kb on - strand, within Psyr_5051 at 5993.194 kb on - strand, within Psyr_5051 at 5993.194 kb on - strand, within Psyr_5051 at 5993.337 kb on + strand, within Psyr_5051 at 5993.337 kb on + strand, within Psyr_5051 at 5993.337 kb on + strand, within Psyr_5051 at 5993.337 kb on + strand, within Psyr_5051 at 5993.337 kb on + strand, within Psyr_5051 at 5993.338 kb on - strand, within Psyr_5051 at 5993.338 kb on - strand, within Psyr_5051 at 5993.338 kb on - strand, within Psyr_5051 at 5993.338 kb on - strand, within Psyr_5051 at 5993.546 kb on - strand at 5993.649 kb on - strand at 5993.674 kb on + strand at 5993.674 kb on + strand at 5993.675 kb on - strand at 5993.723 kb on - strand at 5993.747 kb on + strand at 5993.749 kb on + strand at 5993.750 kb on - strand at 5993.750 kb on - strand at 5993.824 kb on - strand at 5993.824 kb on - strand at 5993.856 kb on - strand at 5994.122 kb on + strand, within Psyr_5052 at 5994.123 kb on - strand, within Psyr_5052 at 5994.170 kb on + strand, within Psyr_5052 at 5994.170 kb on + strand, within Psyr_5052 at 5994.170 kb on + strand, within Psyr_5052 at 5994.170 kb on + strand, within Psyr_5052 at 5994.171 kb on - strand, within Psyr_5052 at 5994.171 kb on - strand, within Psyr_5052 at 5994.219 kb on + strand, within Psyr_5052 at 5994.336 kb on + strand, within Psyr_5052 at 5994.419 kb on + strand, within Psyr_5052 at 5994.420 kb on - strand, within Psyr_5052 at 5994.420 kb on - strand, within Psyr_5052 at 5994.420 kb on - strand, within Psyr_5052 at 5994.420 kb on - strand, within Psyr_5052 at 5994.420 kb on - strand, within Psyr_5052 at 5994.437 kb on + strand, within Psyr_5052 at 5994.437 kb on + strand, within Psyr_5052 at 5994.437 kb on + strand, within Psyr_5052 at 5994.437 kb on + strand, within Psyr_5052 at 5994.437 kb on + strand, within Psyr_5052 at 5994.437 kb on + strand, within Psyr_5052 at 5994.437 kb on + strand, within Psyr_5052 at 5994.437 kb on + strand, within Psyr_5052 at 5994.438 kb on - strand, within Psyr_5052 at 5994.438 kb on - strand, within Psyr_5052 at 5994.438 kb on - strand, within Psyr_5052 at 5994.438 kb on - strand, within Psyr_5052 at 5994.438 kb on - strand, within Psyr_5052 at 5994.438 kb on - strand, within Psyr_5052 at 5994.438 kb on - strand, within Psyr_5052 at 5994.478 kb on + strand, within Psyr_5052 at 5994.478 kb on + strand, within Psyr_5052 at 5994.478 kb on + strand, within Psyr_5052 at 5994.478 kb on + strand, within Psyr_5052 at 5994.478 kb on + strand, within Psyr_5052 at 5994.479 kb on - strand, within Psyr_5052 at 5994.479 kb on - strand, within Psyr_5052
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Piperine 10 mM remove 5,991,091 + Psyr_5050 0.24 +0.2 5,991,092 - Psyr_5050 0.24 -3.0 5,991,092 - Psyr_5050 0.24 -1.2 5,991,316 + Psyr_5050 0.48 -1.4 5,991,316 + Psyr_5050 0.48 -0.9 5,991,316 + Psyr_5050 0.48 -0.6 5,991,870 - +0.4 5,991,870 - -0.5 5,991,870 - +1.0 5,991,870 - +0.2 5,991,969 - +0.7 5,991,969 - +0.9 5,991,984 - +1.1 5,992,031 - -1.4 5,992,150 - -0.1 5,992,150 - -0.7 5,992,152 + -0.9 5,992,153 - +0.2 5,992,467 + Psyr_5051 0.27 +1.0 5,992,467 + Psyr_5051 0.27 +0.0 5,992,468 - Psyr_5051 0.27 -0.8 5,992,944 - Psyr_5051 0.61 -0.4 5,993,194 - Psyr_5051 0.78 -0.1 5,993,194 - Psyr_5051 0.78 +1.7 5,993,337 + Psyr_5051 0.88 +0.3 5,993,337 + Psyr_5051 0.88 -0.7 5,993,337 + Psyr_5051 0.88 -1.0 5,993,337 + Psyr_5051 0.88 +1.3 5,993,337 + Psyr_5051 0.88 -0.4 5,993,338 - Psyr_5051 0.88 +0.3 5,993,338 - Psyr_5051 0.88 -0.2 5,993,338 - Psyr_5051 0.88 -1.0 5,993,338 - Psyr_5051 0.88 +0.5 5,993,546 - -0.5 5,993,649 - +2.8 5,993,674 + -1.3 5,993,674 + +0.2 5,993,675 - +1.0 5,993,723 - -0.1 5,993,747 + -1.4 5,993,749 + -1.0 5,993,750 - +3.2 5,993,750 - +2.9 5,993,824 - -0.6 5,993,824 - -0.9 5,993,856 - +1.2 5,994,122 + Psyr_5052 0.23 -0.3 5,994,123 - Psyr_5052 0.23 -0.1 5,994,170 + Psyr_5052 0.26 +0.9 5,994,170 + Psyr_5052 0.26 +1.6 5,994,170 + Psyr_5052 0.26 +0.0 5,994,170 + Psyr_5052 0.26 +0.8 5,994,171 - Psyr_5052 0.27 -1.0 5,994,171 - Psyr_5052 0.27 -0.9 5,994,219 + Psyr_5052 0.30 -1.5 5,994,336 + Psyr_5052 0.38 +1.0 5,994,419 + Psyr_5052 0.44 -0.4 5,994,420 - Psyr_5052 0.44 -3.9 5,994,420 - Psyr_5052 0.44 +0.7 5,994,420 - Psyr_5052 0.44 +0.8 5,994,420 - Psyr_5052 0.44 -1.1 5,994,420 - Psyr_5052 0.44 +0.3 5,994,437 + Psyr_5052 0.45 -0.1 5,994,437 + Psyr_5052 0.45 +1.0 5,994,437 + Psyr_5052 0.45 +0.1 5,994,437 + Psyr_5052 0.45 +0.3 5,994,437 + Psyr_5052 0.45 +1.3 5,994,437 + Psyr_5052 0.45 +0.5 5,994,437 + Psyr_5052 0.45 +0.5 5,994,437 + Psyr_5052 0.45 -0.2 5,994,438 - Psyr_5052 0.45 +1.0 5,994,438 - Psyr_5052 0.45 +1.1 5,994,438 - Psyr_5052 0.45 -0.2 5,994,438 - Psyr_5052 0.45 -0.3 5,994,438 - Psyr_5052 0.45 +0.4 5,994,438 - Psyr_5052 0.45 -0.7 5,994,438 - Psyr_5052 0.45 -1.6 5,994,478 + Psyr_5052 0.48 -2.7 5,994,478 + Psyr_5052 0.48 +0.7 5,994,478 + Psyr_5052 0.48 +0.4 5,994,478 + Psyr_5052 0.48 -0.1 5,994,478 + Psyr_5052 0.48 -1.4 5,994,479 - Psyr_5052 0.48 +0.1 5,994,479 - Psyr_5052 0.48 +1.4
Or see this region's nucleotide sequence