Experiment: KB with Piperine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4061 and Psyr_4062 are separated by 130 nucleotides Psyr_4062 and Psyr_4063 are separated by 226 nucleotides
Psyr_4061: Psyr_4061 - imelysin, Metallo peptidase, MEROPS family M75, at 4,844,672 to 4,846,048
_4061
Psyr_4062: Psyr_4062 - Pyridoxamine 5'-phosphate oxidase-related protein, at 4,846,179 to 4,846,808
_4062
Psyr_4063: Psyr_4063 - Protein of unknown function DUF1111, at 4,847,035 to 4,848,462
_4063
Position (kb) 4846
4847 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4845.234 kb on + strand, within Psyr_4061 at 4845.234 kb on + strand, within Psyr_4061 at 4845.235 kb on - strand, within Psyr_4061 at 4845.235 kb on - strand, within Psyr_4061 at 4845.389 kb on + strand, within Psyr_4061 at 4845.390 kb on - strand, within Psyr_4061 at 4845.390 kb on - strand, within Psyr_4061 at 4845.441 kb on - strand, within Psyr_4061 at 4845.441 kb on - strand, within Psyr_4061 at 4845.522 kb on - strand, within Psyr_4061 at 4845.698 kb on + strand, within Psyr_4061 at 4845.698 kb on + strand, within Psyr_4061 at 4845.698 kb on + strand, within Psyr_4061 at 4845.698 kb on + strand, within Psyr_4061 at 4845.699 kb on - strand, within Psyr_4061 at 4845.699 kb on - strand, within Psyr_4061 at 4845.699 kb on - strand, within Psyr_4061 at 4845.699 kb on - strand, within Psyr_4061 at 4845.725 kb on + strand, within Psyr_4061 at 4845.726 kb on - strand, within Psyr_4061 at 4845.737 kb on + strand, within Psyr_4061 at 4845.737 kb on + strand, within Psyr_4061 at 4846.183 kb on + strand at 4846.183 kb on + strand at 4846.183 kb on + strand at 4846.184 kb on - strand at 4846.184 kb on - strand at 4846.184 kb on - strand at 4846.184 kb on - strand at 4846.184 kb on - strand at 4846.184 kb on - strand at 4846.191 kb on - strand at 4846.200 kb on - strand at 4846.222 kb on + strand at 4846.355 kb on - strand, within Psyr_4062 at 4846.486 kb on - strand, within Psyr_4062 at 4846.570 kb on + strand, within Psyr_4062 at 4846.570 kb on + strand, within Psyr_4062 at 4846.570 kb on + strand, within Psyr_4062 at 4846.751 kb on - strand at 4846.751 kb on - strand at 4846.802 kb on + strand at 4846.835 kb on + strand at 4846.835 kb on + strand at 4846.835 kb on + strand at 4846.835 kb on + strand at 4846.835 kb on + strand at 4846.835 kb on + strand at 4846.836 kb on - strand at 4846.836 kb on - strand at 4846.836 kb on - strand at 4846.836 kb on - strand at 4846.836 kb on - strand at 4846.836 kb on - strand at 4846.836 kb on - strand at 4846.836 kb on - strand at 4846.836 kb on - strand at 4846.888 kb on + strand at 4846.889 kb on - strand at 4846.993 kb on - strand at 4847.034 kb on + strand at 4847.034 kb on + strand at 4847.034 kb on + strand at 4847.035 kb on - strand at 4847.035 kb on - strand at 4847.040 kb on + strand at 4847.431 kb on + strand, within Psyr_4063 at 4847.432 kb on - strand, within Psyr_4063 at 4847.442 kb on + strand, within Psyr_4063 at 4847.443 kb on - strand, within Psyr_4063 at 4847.443 kb on - strand, within Psyr_4063 at 4847.444 kb on + strand, within Psyr_4063 at 4847.444 kb on + strand, within Psyr_4063 at 4847.444 kb on + strand, within Psyr_4063 at 4847.444 kb on + strand, within Psyr_4063 at 4847.542 kb on + strand, within Psyr_4063 at 4847.543 kb on - strand, within Psyr_4063 at 4847.644 kb on - strand, within Psyr_4063
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Piperine 10 mM remove 4,845,234 + Psyr_4061 0.41 -1.4 4,845,234 + Psyr_4061 0.41 -1.9 4,845,235 - Psyr_4061 0.41 -1.6 4,845,235 - Psyr_4061 0.41 +0.7 4,845,389 + Psyr_4061 0.52 -0.4 4,845,390 - Psyr_4061 0.52 +0.9 4,845,390 - Psyr_4061 0.52 +2.5 4,845,441 - Psyr_4061 0.56 -0.3 4,845,441 - Psyr_4061 0.56 +0.7 4,845,522 - Psyr_4061 0.62 +0.2 4,845,698 + Psyr_4061 0.75 -0.0 4,845,698 + Psyr_4061 0.75 +1.7 4,845,698 + Psyr_4061 0.75 -0.4 4,845,698 + Psyr_4061 0.75 +0.3 4,845,699 - Psyr_4061 0.75 -0.3 4,845,699 - Psyr_4061 0.75 +3.8 4,845,699 - Psyr_4061 0.75 +0.3 4,845,699 - Psyr_4061 0.75 +0.2 4,845,725 + Psyr_4061 0.76 +0.5 4,845,726 - Psyr_4061 0.77 +1.9 4,845,737 + Psyr_4061 0.77 +0.3 4,845,737 + Psyr_4061 0.77 -2.2 4,846,183 + +2.5 4,846,183 + +0.6 4,846,183 + +0.5 4,846,184 - -0.3 4,846,184 - -0.9 4,846,184 - -0.1 4,846,184 - +0.4 4,846,184 - -0.2 4,846,184 - -2.6 4,846,191 - +3.8 4,846,200 - -0.1 4,846,222 + +0.1 4,846,355 - Psyr_4062 0.28 -1.1 4,846,486 - Psyr_4062 0.49 +0.9 4,846,570 + Psyr_4062 0.62 -0.4 4,846,570 + Psyr_4062 0.62 -0.3 4,846,570 + Psyr_4062 0.62 -0.1 4,846,751 - -1.5 4,846,751 - -0.4 4,846,802 + +3.9 4,846,835 + -0.0 4,846,835 + +0.9 4,846,835 + -0.9 4,846,835 + -0.3 4,846,835 + -0.4 4,846,835 + -0.9 4,846,836 - +1.6 4,846,836 - -0.5 4,846,836 - +0.1 4,846,836 - +0.2 4,846,836 - -1.4 4,846,836 - -2.1 4,846,836 - -0.8 4,846,836 - +0.0 4,846,836 - -1.0 4,846,888 + +0.0 4,846,889 - -1.1 4,846,993 - +0.6 4,847,034 + -0.9 4,847,034 + +0.2 4,847,034 + -1.2 4,847,035 - -0.9 4,847,035 - +0.9 4,847,040 + -0.1 4,847,431 + Psyr_4063 0.28 +0.7 4,847,432 - Psyr_4063 0.28 +0.4 4,847,442 + Psyr_4063 0.29 +0.4 4,847,443 - Psyr_4063 0.29 -1.3 4,847,443 - Psyr_4063 0.29 +0.5 4,847,444 + Psyr_4063 0.29 -3.4 4,847,444 + Psyr_4063 0.29 -0.6 4,847,444 + Psyr_4063 0.29 +2.7 4,847,444 + Psyr_4063 0.29 +1.9 4,847,542 + Psyr_4063 0.36 -1.3 4,847,543 - Psyr_4063 0.36 -1.6 4,847,644 - Psyr_4063 0.43 -1.5
Or see this region's nucleotide sequence