Experiment: KB with Piperine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3934 and Psyr_3935 are separated by 124 nucleotides Psyr_3935 and Psyr_3936 are separated by 10 nucleotides Psyr_3936 and Psyr_3937 are separated by 27 nucleotides Psyr_3937 and Psyr_3938 are separated by 76 nucleotides
Psyr_3934: Psyr_3934 - Short-chain dehydrogenase/reductase SDR, at 4,679,341 to 4,680,090
_3934
Psyr_3935: Psyr_3935 - Short-chain dehydrogenase/reductase SDR, at 4,680,215 to 4,680,976
_3935
Psyr_3936: Psyr_3936 - General substrate transporter:Major facilitator superfamily, at 4,680,987 to 4,682,327
_3936
Psyr_3937: Psyr_3937 - Polysaccharide deacetylase, at 4,682,355 to 4,683,236
_3937
Psyr_3938: Psyr_3938 - Amidase, at 4,683,313 to 4,684,686
_3938
Position (kb) 4680
4681
4682
4683 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 4680.015 kb on - strand, within Psyr_3934 at 4680.129 kb on - strand at 4680.273 kb on + strand at 4680.273 kb on + strand at 4680.520 kb on - strand, within Psyr_3935 at 4680.520 kb on - strand, within Psyr_3935 at 4680.543 kb on + strand, within Psyr_3935 at 4680.544 kb on - strand, within Psyr_3935 at 4680.544 kb on - strand, within Psyr_3935 at 4680.724 kb on - strand, within Psyr_3935 at 4680.968 kb on - strand at 4681.066 kb on + strand at 4681.066 kb on + strand at 4681.067 kb on - strand at 4681.228 kb on + strand, within Psyr_3936 at 4681.229 kb on - strand, within Psyr_3936 at 4681.262 kb on - strand, within Psyr_3936 at 4681.262 kb on - strand, within Psyr_3936 at 4681.262 kb on - strand, within Psyr_3936 at 4681.262 kb on - strand, within Psyr_3936 at 4681.394 kb on - strand, within Psyr_3936 at 4681.855 kb on + strand, within Psyr_3936 at 4681.856 kb on - strand, within Psyr_3936 at 4681.856 kb on - strand, within Psyr_3936 at 4681.856 kb on - strand, within Psyr_3936 at 4681.903 kb on + strand, within Psyr_3936 at 4681.903 kb on + strand, within Psyr_3936 at 4681.904 kb on - strand, within Psyr_3936 at 4681.904 kb on - strand, within Psyr_3936 at 4681.919 kb on - strand, within Psyr_3936 at 4681.919 kb on - strand, within Psyr_3936 at 4681.919 kb on - strand, within Psyr_3936 at 4681.919 kb on - strand, within Psyr_3936 at 4682.215 kb on + strand at 4682.215 kb on + strand at 4682.216 kb on - strand at 4682.216 kb on - strand at 4682.216 kb on - strand at 4682.216 kb on - strand at 4682.216 kb on - strand at 4682.216 kb on - strand at 4682.216 kb on - strand at 4682.262 kb on + strand at 4682.262 kb on + strand at 4682.312 kb on + strand at 4682.313 kb on - strand at 4682.313 kb on - strand at 4682.313 kb on - strand at 4682.313 kb on - strand at 4682.317 kb on + strand at 4682.318 kb on - strand at 4682.318 kb on - strand at 4682.318 kb on - strand at 4682.318 kb on - strand at 4682.728 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.764 kb on + strand, within Psyr_3937 at 4682.765 kb on - strand, within Psyr_3937 at 4682.765 kb on - strand, within Psyr_3937 at 4682.765 kb on - strand, within Psyr_3937 at 4682.765 kb on - strand, within Psyr_3937 at 4682.767 kb on + strand, within Psyr_3937 at 4682.803 kb on + strand, within Psyr_3937 at 4682.803 kb on + strand, within Psyr_3937 at 4682.803 kb on + strand, within Psyr_3937 at 4682.804 kb on - strand, within Psyr_3937 at 4682.804 kb on - strand, within Psyr_3937 at 4682.804 kb on - strand, within Psyr_3937 at 4682.869 kb on + strand, within Psyr_3937 at 4682.870 kb on - strand, within Psyr_3937 at 4683.066 kb on - strand, within Psyr_3937 at 4683.169 kb on + strand at 4683.169 kb on + strand at 4683.170 kb on - strand at 4683.326 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Piperine 10 mM remove 4,680,015 - Psyr_3934 0.90 +0.3 4,680,129 - +0.4 4,680,273 + -1.5 4,680,273 + -0.5 4,680,520 - Psyr_3935 0.40 +0.9 4,680,520 - Psyr_3935 0.40 -0.6 4,680,543 + Psyr_3935 0.43 +0.0 4,680,544 - Psyr_3935 0.43 -3.8 4,680,544 - Psyr_3935 0.43 -0.2 4,680,724 - Psyr_3935 0.67 -1.3 4,680,968 - -0.7 4,681,066 + -1.3 4,681,066 + -1.1 4,681,067 - -2.2 4,681,228 + Psyr_3936 0.18 +0.1 4,681,229 - Psyr_3936 0.18 +0.1 4,681,262 - Psyr_3936 0.21 +0.1 4,681,262 - Psyr_3936 0.21 +0.4 4,681,262 - Psyr_3936 0.21 +1.6 4,681,262 - Psyr_3936 0.21 -1.3 4,681,394 - Psyr_3936 0.30 +0.7 4,681,855 + Psyr_3936 0.65 -1.2 4,681,856 - Psyr_3936 0.65 +0.1 4,681,856 - Psyr_3936 0.65 -0.0 4,681,856 - Psyr_3936 0.65 +1.6 4,681,903 + Psyr_3936 0.68 -1.0 4,681,903 + Psyr_3936 0.68 -0.2 4,681,904 - Psyr_3936 0.68 +0.2 4,681,904 - Psyr_3936 0.68 -2.5 4,681,919 - Psyr_3936 0.70 +1.1 4,681,919 - Psyr_3936 0.70 +2.5 4,681,919 - Psyr_3936 0.70 -0.7 4,681,919 - Psyr_3936 0.70 +0.8 4,682,215 + -0.1 4,682,215 + +1.7 4,682,216 - +0.3 4,682,216 - +0.0 4,682,216 - +1.1 4,682,216 - +1.4 4,682,216 - -0.1 4,682,216 - -0.3 4,682,216 - +0.7 4,682,262 + +0.8 4,682,262 + +1.3 4,682,312 + -1.3 4,682,313 - +0.7 4,682,313 - +0.3 4,682,313 - -0.2 4,682,313 - -1.0 4,682,317 + +0.3 4,682,318 - +0.9 4,682,318 - -0.4 4,682,318 - +1.6 4,682,318 - +0.2 4,682,728 + Psyr_3937 0.42 -0.2 4,682,764 + Psyr_3937 0.46 +0.2 4,682,764 + Psyr_3937 0.46 +0.5 4,682,764 + Psyr_3937 0.46 -1.5 4,682,764 + Psyr_3937 0.46 -0.7 4,682,764 + Psyr_3937 0.46 +3.5 4,682,764 + Psyr_3937 0.46 -0.1 4,682,764 + Psyr_3937 0.46 +0.8 4,682,764 + Psyr_3937 0.46 +0.7 4,682,764 + Psyr_3937 0.46 +0.5 4,682,765 - Psyr_3937 0.46 +0.1 4,682,765 - Psyr_3937 0.46 -1.3 4,682,765 - Psyr_3937 0.46 +1.2 4,682,765 - Psyr_3937 0.46 +0.2 4,682,767 + Psyr_3937 0.47 -0.3 4,682,803 + Psyr_3937 0.51 -3.3 4,682,803 + Psyr_3937 0.51 -1.3 4,682,803 + Psyr_3937 0.51 +1.2 4,682,804 - Psyr_3937 0.51 +1.1 4,682,804 - Psyr_3937 0.51 -0.7 4,682,804 - Psyr_3937 0.51 +0.9 4,682,869 + Psyr_3937 0.58 -3.9 4,682,870 - Psyr_3937 0.58 +0.3 4,683,066 - Psyr_3937 0.81 +3.9 4,683,169 + +0.4 4,683,169 + -0.2 4,683,170 - -0.1 4,683,326 - -0.6
Or see this region's nucleotide sequence