Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1443

Experiment: KB with Piperine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1442 and Psyr_1443 overlap by 1 nucleotidesPsyr_1443 and Psyr_1444 overlap by 23 nucleotides Psyr_1442: Psyr_1442 - conserved hypothetical protein, at 1,630,375 to 1,633,383 _1442 Psyr_1443: Psyr_1443 - conserved hypothetical protein, at 1,633,383 to 1,633,838 _1443 Psyr_1444: Psyr_1444 - conserved hypothetical protein, at 1,633,816 to 1,635,300 _1444 Position (kb) 1633 1634Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1632.783 kb on - strand, within Psyr_1442at 1632.783 kb on - strand, within Psyr_1442at 1632.783 kb on - strand, within Psyr_1442at 1632.808 kb on - strand, within Psyr_1442at 1632.824 kb on + strand, within Psyr_1442at 1632.824 kb on + strand, within Psyr_1442at 1632.824 kb on + strand, within Psyr_1442at 1632.824 kb on + strand, within Psyr_1442at 1632.824 kb on + strand, within Psyr_1442at 1632.825 kb on - strand, within Psyr_1442at 1632.825 kb on - strand, within Psyr_1442at 1632.846 kb on - strand, within Psyr_1442at 1632.846 kb on - strand, within Psyr_1442at 1632.846 kb on - strand, within Psyr_1442at 1632.846 kb on - strand, within Psyr_1442at 1633.062 kb on - strand, within Psyr_1442at 1633.107 kb on - strandat 1633.107 kb on - strandat 1633.107 kb on - strandat 1633.107 kb on - strandat 1633.321 kb on + strandat 1633.321 kb on + strandat 1633.322 kb on - strandat 1633.322 kb on - strandat 1633.322 kb on - strandat 1633.323 kb on + strandat 1633.335 kb on + strandat 1633.335 kb on + strandat 1633.336 kb on - strandat 1633.418 kb on - strandat 1633.501 kb on + strand, within Psyr_1443at 1633.501 kb on + strand, within Psyr_1443at 1633.501 kb on + strand, within Psyr_1443at 1633.501 kb on + strand, within Psyr_1443at 1633.501 kb on + strand, within Psyr_1443at 1633.501 kb on + strand, within Psyr_1443at 1633.501 kb on + strand, within Psyr_1443at 1633.501 kb on + strand, within Psyr_1443at 1633.501 kb on + strand, within Psyr_1443at 1633.501 kb on + strand, within Psyr_1443at 1633.501 kb on + strand, within Psyr_1443at 1633.501 kb on + strand, within Psyr_1443at 1633.501 kb on + strand, within Psyr_1443at 1633.501 kb on + strand, within Psyr_1443at 1633.502 kb on - strand, within Psyr_1443at 1633.502 kb on - strand, within Psyr_1443at 1633.502 kb on - strand, within Psyr_1443at 1633.502 kb on - strand, within Psyr_1443at 1633.502 kb on - strand, within Psyr_1443at 1633.502 kb on - strand, within Psyr_1443at 1633.502 kb on - strand, within Psyr_1443at 1633.502 kb on - strand, within Psyr_1443at 1633.502 kb on - strand, within Psyr_1443at 1633.502 kb on - strand, within Psyr_1443at 1633.502 kb on - strand, within Psyr_1443at 1633.502 kb on - strand, within Psyr_1443at 1633.543 kb on + strand, within Psyr_1443at 1633.543 kb on + strand, within Psyr_1443at 1633.544 kb on - strand, within Psyr_1443at 1633.783 kb on + strand, within Psyr_1443at 1633.783 kb on + strand, within Psyr_1443at 1633.784 kb on - strand, within Psyr_1443at 1633.784 kb on - strand, within Psyr_1443at 1633.784 kb on - strand, within Psyr_1443at 1633.856 kb on + strandat 1633.856 kb on + strandat 1633.856 kb on + strandat 1633.857 kb on - strandat 1633.857 kb on - strandat 1633.857 kb on - strandat 1633.857 kb on - strandat 1633.883 kb on + strandat 1633.940 kb on + strandat 1633.940 kb on + strandat 1633.940 kb on + strandat 1633.940 kb on + strandat 1633.940 kb on + strandat 1633.940 kb on + strandat 1633.941 kb on - strandat 1633.941 kb on - strandat 1633.941 kb on - strandat 1633.941 kb on - strandat 1633.941 kb on - strandat 1633.941 kb on - strandat 1634.078 kb on + strand, within Psyr_1444at 1634.078 kb on + strand, within Psyr_1444at 1634.078 kb on + strand, within Psyr_1444at 1634.078 kb on + strand, within Psyr_1444at 1634.078 kb on + strand, within Psyr_1444at 1634.078 kb on + strand, within Psyr_1444at 1634.078 kb on + strand, within Psyr_1444at 1634.078 kb on + strand, within Psyr_1444at 1634.078 kb on + strand, within Psyr_1444at 1634.078 kb on + strand, within Psyr_1444at 1634.078 kb on + strand, within Psyr_1444at 1634.078 kb on + strand, within Psyr_1444at 1634.078 kb on + strand, within Psyr_1444at 1634.159 kb on + strand, within Psyr_1444at 1634.159 kb on + strand, within Psyr_1444at 1634.159 kb on + strand, within Psyr_1444at 1634.159 kb on + strand, within Psyr_1444at 1634.160 kb on - strand, within Psyr_1444at 1634.160 kb on - strand, within Psyr_1444at 1634.160 kb on - strand, within Psyr_1444at 1634.160 kb on - strand, within Psyr_1444at 1634.160 kb on - strand, within Psyr_1444at 1634.160 kb on - strand, within Psyr_1444at 1634.194 kb on - strand, within Psyr_1444at 1634.208 kb on - strand, within Psyr_1444at 1634.332 kb on - strand, within Psyr_1444at 1634.577 kb on - strand, within Psyr_1444at 1634.577 kb on - strand, within Psyr_1444at 1634.577 kb on - strand, within Psyr_1444at 1634.587 kb on + strand, within Psyr_1444at 1634.588 kb on - strand, within Psyr_1444at 1634.588 kb on - strand, within Psyr_1444at 1634.588 kb on - strand, within Psyr_1444at 1634.595 kb on + strand, within Psyr_1444at 1634.595 kb on + strand, within Psyr_1444at 1634.672 kb on - strand, within Psyr_1444at 1634.691 kb on + strand, within Psyr_1444at 1634.691 kb on + strand, within Psyr_1444at 1634.692 kb on - strand, within Psyr_1444

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Piperine 10 mM
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1,632,783 - Psyr_1442 0.80 +0.1
1,632,783 - Psyr_1442 0.80 -1.2
1,632,783 - Psyr_1442 0.80 -0.3
1,632,808 - Psyr_1442 0.81 -3.7
1,632,824 + Psyr_1442 0.81 -1.4
1,632,824 + Psyr_1442 0.81 +0.2
1,632,824 + Psyr_1442 0.81 -2.2
1,632,824 + Psyr_1442 0.81 -1.7
1,632,824 + Psyr_1442 0.81 -0.5
1,632,825 - Psyr_1442 0.81 -1.3
1,632,825 - Psyr_1442 0.81 -0.1
1,632,846 - Psyr_1442 0.82 -3.3
1,632,846 - Psyr_1442 0.82 +0.3
1,632,846 - Psyr_1442 0.82 -0.4
1,632,846 - Psyr_1442 0.82 +0.3
1,633,062 - Psyr_1442 0.89 +0.5
1,633,107 - +0.7
1,633,107 - +0.7
1,633,107 - -0.2
1,633,107 - +0.1
1,633,321 + -0.8
1,633,321 + -0.4
1,633,322 - +1.4
1,633,322 - -0.9
1,633,322 - +0.9
1,633,323 + -1.7
1,633,335 + -0.0
1,633,335 + +0.6
1,633,336 - -0.2
1,633,418 - -0.7
1,633,501 + Psyr_1443 0.26 -3.0
1,633,501 + Psyr_1443 0.26 -3.1
1,633,501 + Psyr_1443 0.26 -0.1
1,633,501 + Psyr_1443 0.26 +0.2
1,633,501 + Psyr_1443 0.26 -0.9
1,633,501 + Psyr_1443 0.26 +0.4
1,633,501 + Psyr_1443 0.26 +2.4
1,633,501 + Psyr_1443 0.26 +0.5
1,633,501 + Psyr_1443 0.26 -1.4
1,633,501 + Psyr_1443 0.26 -0.6
1,633,501 + Psyr_1443 0.26 -0.2
1,633,501 + Psyr_1443 0.26 +0.6
1,633,501 + Psyr_1443 0.26 +1.7
1,633,501 + Psyr_1443 0.26 -2.9
1,633,502 - Psyr_1443 0.26 +1.7
1,633,502 - Psyr_1443 0.26 -1.7
1,633,502 - Psyr_1443 0.26 +3.9
1,633,502 - Psyr_1443 0.26 +2.1
1,633,502 - Psyr_1443 0.26 +1.3
1,633,502 - Psyr_1443 0.26 -0.9
1,633,502 - Psyr_1443 0.26 -1.2
1,633,502 - Psyr_1443 0.26 -2.2
1,633,502 - Psyr_1443 0.26 -0.4
1,633,502 - Psyr_1443 0.26 +0.5
1,633,502 - Psyr_1443 0.26 -0.7
1,633,502 - Psyr_1443 0.26 -1.7
1,633,543 + Psyr_1443 0.35 -1.1
1,633,543 + Psyr_1443 0.35 +1.3
1,633,544 - Psyr_1443 0.35 -0.0
1,633,783 + Psyr_1443 0.88 -1.7
1,633,783 + Psyr_1443 0.88 -2.1
1,633,784 - Psyr_1443 0.88 -0.3
1,633,784 - Psyr_1443 0.88 -1.1
1,633,784 - Psyr_1443 0.88 -1.9
1,633,856 + -0.6
1,633,856 + -1.7
1,633,856 + -0.8
1,633,857 - +0.8
1,633,857 - -0.9
1,633,857 - +0.1
1,633,857 - +0.3
1,633,883 + +0.9
1,633,940 + +2.3
1,633,940 + -0.5
1,633,940 + +0.5
1,633,940 + -1.2
1,633,940 + +2.8
1,633,940 + -1.6
1,633,941 - +1.5
1,633,941 - +2.8
1,633,941 - -0.5
1,633,941 - -0.0
1,633,941 - -0.8
1,633,941 - +0.5
1,634,078 + Psyr_1444 0.18 -0.5
1,634,078 + Psyr_1444 0.18 +0.8
1,634,078 + Psyr_1444 0.18 +0.4
1,634,078 + Psyr_1444 0.18 +0.5
1,634,078 + Psyr_1444 0.18 -0.9
1,634,078 + Psyr_1444 0.18 +0.3
1,634,078 + Psyr_1444 0.18 +3.1
1,634,078 + Psyr_1444 0.18 -0.2
1,634,078 + Psyr_1444 0.18 +0.3
1,634,078 + Psyr_1444 0.18 +0.1
1,634,078 + Psyr_1444 0.18 -1.5
1,634,078 + Psyr_1444 0.18 +0.3
1,634,078 + Psyr_1444 0.18 -0.4
1,634,159 + Psyr_1444 0.23 -2.2
1,634,159 + Psyr_1444 0.23 -0.5
1,634,159 + Psyr_1444 0.23 +0.1
1,634,159 + Psyr_1444 0.23 -0.5
1,634,160 - Psyr_1444 0.23 -2.4
1,634,160 - Psyr_1444 0.23 -1.6
1,634,160 - Psyr_1444 0.23 +0.8
1,634,160 - Psyr_1444 0.23 -1.7
1,634,160 - Psyr_1444 0.23 +0.5
1,634,160 - Psyr_1444 0.23 -1.5
1,634,194 - Psyr_1444 0.25 +1.1
1,634,208 - Psyr_1444 0.26 +0.7
1,634,332 - Psyr_1444 0.35 +0.8
1,634,577 - Psyr_1444 0.51 -1.1
1,634,577 - Psyr_1444 0.51 -0.8
1,634,577 - Psyr_1444 0.51 -0.4
1,634,587 + Psyr_1444 0.52 -0.4
1,634,588 - Psyr_1444 0.52 -1.2
1,634,588 - Psyr_1444 0.52 -0.3
1,634,588 - Psyr_1444 0.52 +0.5
1,634,595 + Psyr_1444 0.52 -1.2
1,634,595 + Psyr_1444 0.52 -0.0
1,634,672 - Psyr_1444 0.58 -0.5
1,634,691 + Psyr_1444 0.59 +3.9
1,634,691 + Psyr_1444 0.59 -1.9
1,634,692 - Psyr_1444 0.59 +0.8

Or see this region's nucleotide sequence