Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0360

Experiment: KB with Piperine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0359 and Psyr_0360 are separated by 197 nucleotidesPsyr_0360 and Psyr_0361 are separated by 12 nucleotidesPsyr_0361 and Psyr_0362 overlap by 4 nucleotides Psyr_0359: Psyr_0359 - D-cysteine desulfhydrase, at 384,416 to 385,414 _0359 Psyr_0360: Psyr_0360 - serine O-acetyltransferase, at 385,612 to 386,565 _0360 Psyr_0361: Psyr_0361 - conserved hypothetical protein, at 386,578 to 387,285 _0361 Psyr_0362: Psyr_0362 - Sigma-70 region 2, at 387,282 to 387,848 _0362 Position (kb) 385 386 387Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 384.639 kb on + strand, within Psyr_0359at 384.639 kb on + strand, within Psyr_0359at 384.639 kb on + strand, within Psyr_0359at 384.640 kb on - strand, within Psyr_0359at 384.909 kb on + strand, within Psyr_0359at 384.909 kb on + strand, within Psyr_0359at 384.910 kb on - strand, within Psyr_0359at 385.037 kb on + strand, within Psyr_0359at 385.037 kb on + strand, within Psyr_0359at 385.037 kb on + strand, within Psyr_0359at 385.037 kb on + strand, within Psyr_0359at 385.037 kb on + strand, within Psyr_0359at 385.038 kb on - strand, within Psyr_0359at 385.087 kb on - strand, within Psyr_0359at 385.210 kb on + strand, within Psyr_0359at 385.245 kb on + strand, within Psyr_0359at 385.246 kb on - strand, within Psyr_0359at 385.246 kb on - strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.308 kb on + strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.309 kb on - strand, within Psyr_0359at 385.424 kb on + strandat 385.424 kb on + strandat 385.424 kb on + strandat 385.434 kb on - strandat 385.449 kb on + strandat 385.449 kb on + strandat 385.449 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.478 kb on + strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.479 kb on - strandat 385.548 kb on + strandat 385.549 kb on - strandat 385.556 kb on + strandat 385.559 kb on + strandat 385.559 kb on + strandat 385.560 kb on - strandat 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.858 kb on + strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.859 kb on - strand, within Psyr_0360at 385.869 kb on + strand, within Psyr_0360at 385.870 kb on - strand, within Psyr_0360at 385.870 kb on - strand, within Psyr_0360at 385.870 kb on - strand, within Psyr_0360at 385.925 kb on - strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.140 kb on + strand, within Psyr_0360at 386.141 kb on - strand, within Psyr_0360at 386.141 kb on - strand, within Psyr_0360at 386.141 kb on - strand, within Psyr_0360at 386.141 kb on - strand, within Psyr_0360at 386.141 kb on - strand, within Psyr_0360at 386.146 kb on + strand, within Psyr_0360at 386.175 kb on + strand, within Psyr_0360at 386.176 kb on - strand, within Psyr_0360at 386.214 kb on + strand, within Psyr_0360at 386.314 kb on + strand, within Psyr_0360at 386.314 kb on + strand, within Psyr_0360at 386.314 kb on + strand, within Psyr_0360at 386.315 kb on - strand, within Psyr_0360at 386.419 kb on + strand, within Psyr_0360at 386.419 kb on + strand, within Psyr_0360at 386.419 kb on + strand, within Psyr_0360at 386.419 kb on + strand, within Psyr_0360at 386.419 kb on + strand, within Psyr_0360at 386.419 kb on + strand, within Psyr_0360at 386.419 kb on + strand, within Psyr_0360at 386.420 kb on - strand, within Psyr_0360at 386.420 kb on - strand, within Psyr_0360at 386.563 kb on + strandat 386.563 kb on + strandat 386.564 kb on - strandat 386.564 kb on - strandat 386.564 kb on - strandat 386.564 kb on - strandat 386.836 kb on + strand, within Psyr_0361at 386.836 kb on + strand, within Psyr_0361at 386.837 kb on - strand, within Psyr_0361at 386.837 kb on - strand, within Psyr_0361at 386.850 kb on + strand, within Psyr_0361at 386.910 kb on - strand, within Psyr_0361at 386.953 kb on + strand, within Psyr_0361at 386.954 kb on - strand, within Psyr_0361at 387.199 kb on + strand, within Psyr_0361at 387.199 kb on + strand, within Psyr_0361at 387.200 kb on - strand, within Psyr_0361at 387.200 kb on - strand, within Psyr_0361at 387.235 kb on + strandat 387.235 kb on + strandat 387.235 kb on + strandat 387.235 kb on + strandat 387.236 kb on - strandat 387.236 kb on - strandat 387.236 kb on - strandat 387.239 kb on + strandat 387.239 kb on + strandat 387.239 kb on + strandat 387.239 kb on + strandat 387.239 kb on + strandat 387.239 kb on + strandat 387.240 kb on - strandat 387.390 kb on + strand, within Psyr_0362at 387.394 kb on + strand, within Psyr_0362at 387.394 kb on + strand, within Psyr_0362at 387.395 kb on - strand, within Psyr_0362at 387.395 kb on - strand, within Psyr_0362at 387.407 kb on + strand, within Psyr_0362at 387.407 kb on + strand, within Psyr_0362at 387.408 kb on - strand, within Psyr_0362

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Piperine 10 mM
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384,639 + Psyr_0359 0.22 +2.7
384,639 + Psyr_0359 0.22 +4.1
384,639 + Psyr_0359 0.22 -1.7
384,640 - Psyr_0359 0.22 -0.2
384,909 + Psyr_0359 0.49 -0.6
384,909 + Psyr_0359 0.49 +1.1
384,910 - Psyr_0359 0.49 -0.3
385,037 + Psyr_0359 0.62 +1.0
385,037 + Psyr_0359 0.62 -0.6
385,037 + Psyr_0359 0.62 +0.1
385,037 + Psyr_0359 0.62 -0.2
385,037 + Psyr_0359 0.62 +0.4
385,038 - Psyr_0359 0.62 -0.0
385,087 - Psyr_0359 0.67 +0.2
385,210 + Psyr_0359 0.79 -0.6
385,245 + Psyr_0359 0.83 +0.1
385,246 - Psyr_0359 0.83 +0.7
385,246 - Psyr_0359 0.83 +0.8
385,308 + Psyr_0359 0.89 -0.1
385,308 + Psyr_0359 0.89 +0.7
385,308 + Psyr_0359 0.89 +0.5
385,308 + Psyr_0359 0.89 +0.7
385,308 + Psyr_0359 0.89 -0.1
385,308 + Psyr_0359 0.89 +1.1
385,308 + Psyr_0359 0.89 -0.2
385,308 + Psyr_0359 0.89 +0.2
385,308 + Psyr_0359 0.89 -0.5
385,309 - Psyr_0359 0.89 -1.1
385,309 - Psyr_0359 0.89 -0.9
385,309 - Psyr_0359 0.89 -0.5
385,309 - Psyr_0359 0.89 -1.0
385,309 - Psyr_0359 0.89 -0.5
385,309 - Psyr_0359 0.89 -1.9
385,309 - Psyr_0359 0.89 -0.6
385,309 - Psyr_0359 0.89 +0.3
385,309 - Psyr_0359 0.89 -0.6
385,309 - Psyr_0359 0.89 -0.1
385,309 - Psyr_0359 0.89 -4.2
385,424 + -1.3
385,424 + +3.1
385,424 + -0.2
385,434 - -1.1
385,449 + +0.3
385,449 + -0.1
385,449 + +2.5
385,478 + +0.5
385,478 + -0.1
385,478 + -0.7
385,478 + +0.6
385,478 + -0.9
385,478 + +0.4
385,478 + +0.3
385,478 + +0.5
385,478 + -1.0
385,479 - -3.7
385,479 - +1.0
385,479 - -0.3
385,479 - -0.1
385,479 - +0.5
385,479 - -3.5
385,479 - +0.1
385,548 + +1.2
385,549 - -0.7
385,556 + -2.8
385,559 + -0.6
385,559 + +0.4
385,560 - -0.3
385,858 + Psyr_0360 0.26 +1.4
385,858 + Psyr_0360 0.26 -1.2
385,858 + Psyr_0360 0.26 -0.2
385,858 + Psyr_0360 0.26 +1.1
385,858 + Psyr_0360 0.26 +0.8
385,858 + Psyr_0360 0.26 -0.1
385,858 + Psyr_0360 0.26 -0.8
385,858 + Psyr_0360 0.26 +0.1
385,858 + Psyr_0360 0.26 -2.2
385,858 + Psyr_0360 0.26 -0.0
385,859 - Psyr_0360 0.26 +0.9
385,859 - Psyr_0360 0.26 -0.9
385,859 - Psyr_0360 0.26 +1.2
385,859 - Psyr_0360 0.26 -0.3
385,859 - Psyr_0360 0.26 +0.2
385,859 - Psyr_0360 0.26 +0.8
385,859 - Psyr_0360 0.26 +0.1
385,859 - Psyr_0360 0.26 +2.3
385,859 - Psyr_0360 0.26 +0.3
385,869 + Psyr_0360 0.27 -0.8
385,870 - Psyr_0360 0.27 +0.7
385,870 - Psyr_0360 0.27 -1.8
385,870 - Psyr_0360 0.27 +0.4
385,925 - Psyr_0360 0.33 -1.8
386,140 + Psyr_0360 0.55 +1.7
386,140 + Psyr_0360 0.55 +0.5
386,141 - Psyr_0360 0.55 -1.3
386,141 - Psyr_0360 0.55 -0.1
386,141 - Psyr_0360 0.55 -0.1
386,141 - Psyr_0360 0.55 +1.0
386,141 - Psyr_0360 0.55 -1.5
386,146 + Psyr_0360 0.56 +1.1
386,175 + Psyr_0360 0.59 +1.4
386,176 - Psyr_0360 0.59 +0.7
386,214 + Psyr_0360 0.63 -1.2
386,314 + Psyr_0360 0.74 -0.5
386,314 + Psyr_0360 0.74 +0.4
386,314 + Psyr_0360 0.74 +0.2
386,315 - Psyr_0360 0.74 -1.1
386,419 + Psyr_0360 0.85 +0.6
386,419 + Psyr_0360 0.85 -0.1
386,419 + Psyr_0360 0.85 +0.2
386,419 + Psyr_0360 0.85 +2.1
386,419 + Psyr_0360 0.85 +1.1
386,419 + Psyr_0360 0.85 -1.0
386,419 + Psyr_0360 0.85 -0.1
386,420 - Psyr_0360 0.85 -1.3
386,420 - Psyr_0360 0.85 +0.3
386,563 + -1.0
386,563 + -3.1
386,564 - -0.8
386,564 - +2.1
386,564 - -1.6
386,564 - +0.0
386,836 + Psyr_0361 0.36 -0.3
386,836 + Psyr_0361 0.36 -0.7
386,837 - Psyr_0361 0.37 -0.8
386,837 - Psyr_0361 0.37 -0.5
386,850 + Psyr_0361 0.38 +1.1
386,910 - Psyr_0361 0.47 +0.8
386,953 + Psyr_0361 0.53 +0.1
386,954 - Psyr_0361 0.53 +0.4
387,199 + Psyr_0361 0.88 +0.5
387,199 + Psyr_0361 0.88 -0.8
387,200 - Psyr_0361 0.88 -1.5
387,200 - Psyr_0361 0.88 -1.5
387,235 + -0.6
387,235 + -0.1
387,235 + -2.8
387,235 + +1.1
387,236 - -1.6
387,236 - +0.1
387,236 - +0.1
387,239 + -3.3
387,239 + -0.8
387,239 + -2.2
387,239 + +0.6
387,239 + -1.9
387,239 + +0.4
387,240 - -0.4
387,390 + Psyr_0362 0.19 +0.0
387,394 + Psyr_0362 0.20 +1.4
387,394 + Psyr_0362 0.20 -0.8
387,395 - Psyr_0362 0.20 +0.8
387,395 - Psyr_0362 0.20 +0.2
387,407 + Psyr_0362 0.22 -0.2
387,407 + Psyr_0362 0.22 -1.1
387,408 - Psyr_0362 0.22 +0.7

Or see this region's nucleotide sequence