Experiment: KB with Piperine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0301 and Psyr_0302 are separated by 115 nucleotides Psyr_0302 and Psyr_0303 overlap by 1 nucleotides
Psyr_0301: Psyr_0301 - transcription termination factor Rho, at 320,320 to 321,579
_0301
Psyr_0302: Psyr_0302 - 3-octaprenyl-4hydroxybenzoate decarboxylase, at 321,695 to 323,173
_0302
Psyr_0303: Psyr_0303 - Ferredoxin:Oxidoreductase FAD/NAD(P)-binding protein, at 323,173 to 324,141
_0303
Position (kb) 321
322
323
324 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 321.577 kb on + strand at 321.577 kb on + strand at 321.577 kb on + strand at 321.578 kb on - strand at 321.578 kb on - strand at 321.578 kb on - strand at 321.578 kb on - strand at 321.646 kb on + strand at 321.672 kb on + strand at 321.685 kb on + strand at 321.692 kb on + strand at 321.692 kb on + strand at 323.166 kb on + strand at 323.166 kb on + strand at 323.166 kb on + strand at 323.167 kb on - strand at 323.257 kb on + strand at 323.281 kb on - strand, within Psyr_0303 at 323.368 kb on - strand, within Psyr_0303 at 323.848 kb on + strand, within Psyr_0303 at 323.848 kb on + strand, within Psyr_0303 at 324.055 kb on + strand at 324.055 kb on + strand at 324.116 kb on + strand at 324.116 kb on + strand at 324.117 kb on - strand at 324.172 kb on + strand at 324.172 kb on + strand at 324.172 kb on + strand at 324.173 kb on - strand at 324.173 kb on - strand at 324.173 kb on - strand at 324.173 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Piperine 10 mM remove 321,577 + -3.9 321,577 + +0.7 321,577 + -2.3 321,578 - +2.2 321,578 - -0.4 321,578 - +0.9 321,578 - -0.8 321,646 + -0.6 321,672 + -0.4 321,685 + -1.0 321,692 + -0.4 321,692 + +0.8 323,166 + +0.6 323,166 + -1.0 323,166 + -2.6 323,167 - +0.6 323,257 + -0.5 323,281 - Psyr_0303 0.11 -2.2 323,368 - Psyr_0303 0.20 -3.4 323,848 + Psyr_0303 0.70 -2.8 323,848 + Psyr_0303 0.70 -2.5 324,055 + -1.9 324,055 + -0.0 324,116 + -1.8 324,116 + -1.2 324,117 - -1.0 324,172 + -2.3 324,172 + -0.3 324,172 + -0.7 324,173 - +2.2 324,173 - +0.9 324,173 - -1.6 324,173 - -0.4
Or see this region's nucleotide sequence