Strain Fitness in Escherichia coli BW25113 around b2559

Experiment: Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmltF and tadA overlap by 4 nucleotidestadA and yfhB are separated by 57 nucleotidesyfhB and yfhH are separated by 208 nucleotides b2558: mltF - predicted periplasmic binding protein/transglycosylase (RefSeq), at 2,693,823 to 2,695,379 mltF b2559: tadA - tRNA-specific adenosine deaminase (RefSeq), at 2,695,376 to 2,695,879 tadA b2560: yfhB - orf, hypothetical protein (VIMSS), at 2,695,937 to 2,696,572 yfhB b2561: yfhH - orf, hypothetical protein (VIMSS), at 2,696,781 to 2,697,629 yfhH Position (kb) 2695 2696Strain fitness (log2 ratio) -1 0 1at 2694.433 kb on - strand, within mltFat 2694.438 kb on + strand, within mltFat 2694.438 kb on + strand, within mltFat 2694.592 kb on + strand, within mltFat 2694.592 kb on + strand, within mltFat 2694.611 kb on + strand, within mltFat 2694.684 kb on - strand, within mltFat 2694.692 kb on + strand, within mltFat 2694.716 kb on + strand, within mltFat 2694.791 kb on + strand, within mltFat 2694.792 kb on - strand, within mltFat 2694.824 kb on + strand, within mltFat 2694.847 kb on + strand, within mltFat 2694.891 kb on - strand, within mltFat 2694.891 kb on - strand, within mltFat 2694.931 kb on - strand, within mltFat 2694.931 kb on - strand, within mltFat 2694.969 kb on + strand, within mltFat 2694.971 kb on + strand, within mltFat 2694.976 kb on + strand, within mltFat 2695.086 kb on + strand, within mltFat 2695.109 kb on + strand, within mltFat 2695.125 kb on + strand, within mltFat 2695.138 kb on - strand, within mltFat 2695.203 kb on - strand, within mltFat 2695.203 kb on - strand, within mltFat 2695.252 kb on + strandat 2695.252 kb on + strandat 2695.256 kb on - strandat 2695.260 kb on - strandat 2695.328 kb on + strandat 2695.365 kb on - strandat 2695.945 kb on - strandat 2695.945 kb on - strandat 2695.966 kb on + strandat 2695.966 kb on + strandat 2695.968 kb on + strandat 2695.968 kb on + strandat 2696.004 kb on + strand, within yfhBat 2696.004 kb on + strand, within yfhBat 2696.014 kb on + strand, within yfhBat 2696.014 kb on + strand, within yfhBat 2696.024 kb on + strand, within yfhBat 2696.044 kb on + strand, within yfhBat 2696.044 kb on - strand, within yfhBat 2696.050 kb on - strand, within yfhBat 2696.077 kb on - strand, within yfhBat 2696.077 kb on - strand, within yfhBat 2696.089 kb on + strand, within yfhBat 2696.089 kb on + strand, within yfhBat 2696.164 kb on - strand, within yfhBat 2696.477 kb on + strand, within yfhBat 2696.479 kb on + strand, within yfhBat 2696.479 kb on + strand, within yfhBat 2696.526 kb on + strandat 2696.543 kb on - strandat 2696.543 kb on - strandat 2696.571 kb on + strandat 2696.579 kb on - strandat 2696.582 kb on - strandat 2696.673 kb on - strandat 2696.673 kb on - strandat 2696.739 kb on + strandat 2696.828 kb on + strandat 2696.830 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Glucose (C)
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2,694,433 - mltF b2558 0.39 -0.2
2,694,438 + mltF b2558 0.39 +0.6
2,694,438 + mltF b2558 0.39 +0.5
2,694,592 + mltF b2558 0.49 +0.1
2,694,592 + mltF b2558 0.49 -0.7
2,694,611 + mltF b2558 0.51 +0.3
2,694,684 - mltF b2558 0.55 +0.6
2,694,692 + mltF b2558 0.56 -1.1
2,694,716 + mltF b2558 0.57 +0.0
2,694,791 + mltF b2558 0.62 +0.4
2,694,792 - mltF b2558 0.62 -0.2
2,694,824 + mltF b2558 0.64 -0.2
2,694,847 + mltF b2558 0.66 -0.0
2,694,891 - mltF b2558 0.69 +0.7
2,694,891 - mltF b2558 0.69 +1.1
2,694,931 - mltF b2558 0.71 +0.1
2,694,931 - mltF b2558 0.71 -0.2
2,694,969 + mltF b2558 0.74 +0.1
2,694,971 + mltF b2558 0.74 -0.5
2,694,976 + mltF b2558 0.74 +0.0
2,695,086 + mltF b2558 0.81 +0.5
2,695,109 + mltF b2558 0.83 +0.1
2,695,125 + mltF b2558 0.84 +0.6
2,695,138 - mltF b2558 0.84 +0.2
2,695,203 - mltF b2558 0.89 +0.2
2,695,203 - mltF b2558 0.89 +0.9
2,695,252 + +0.0
2,695,252 + +0.7
2,695,256 - +0.2
2,695,260 - +0.4
2,695,328 + +1.0
2,695,365 - +0.1
2,695,945 - -0.4
2,695,945 - +0.4
2,695,966 + +0.5
2,695,966 + +0.5
2,695,968 + +0.5
2,695,968 + -0.9
2,696,004 + yfhB b2560 0.11 -0.7
2,696,004 + yfhB b2560 0.11 -0.6
2,696,014 + yfhB b2560 0.12 +0.0
2,696,014 + yfhB b2560 0.12 -0.5
2,696,024 + yfhB b2560 0.14 +0.3
2,696,044 + yfhB b2560 0.17 -0.2
2,696,044 - yfhB b2560 0.17 +0.1
2,696,050 - yfhB b2560 0.18 +0.1
2,696,077 - yfhB b2560 0.22 +0.3
2,696,077 - yfhB b2560 0.22 -0.1
2,696,089 + yfhB b2560 0.24 -0.7
2,696,089 + yfhB b2560 0.24 -0.2
2,696,164 - yfhB b2560 0.36 +0.2
2,696,477 + yfhB b2560 0.85 +0.2
2,696,479 + yfhB b2560 0.85 -0.1
2,696,479 + yfhB b2560 0.85 -0.7
2,696,526 + +1.6
2,696,543 - +0.1
2,696,543 - +1.2
2,696,571 + +0.0
2,696,579 - +0.0
2,696,582 - +0.0
2,696,673 - +0.0
2,696,673 - +0.2
2,696,739 + -0.4
2,696,828 + +0.5
2,696,830 + -0.0

Or see this region's nucleotide sequence