Strain Fitness in Escherichia coli BW25113 around b1263

Experiment: Acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrpC and trpD are separated by 3 nucleotidestrpD and trpE overlap by 1 nucleotides b1262: trpC - N-(5-phosphoribosyl)anthranilate isomerase and indole-3-glycerolphosphate synthetase (VIMSS), at 1,316,451 to 1,317,809 trpC b1263: trpD - bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI), at 1,317,813 to 1,319,408 trpD b1264: trpE - anthranilate synthase component I (NCBI), at 1,319,408 to 1,320,970 trpE Position (kb) 1317 1318 1319 1320Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1317.035 kb on - strand, within trpCat 1317.035 kb on - strand, within trpCat 1317.113 kb on - strand, within trpCat 1317.144 kb on - strand, within trpCat 1317.153 kb on + strand, within trpCat 1317.181 kb on + strand, within trpCat 1317.305 kb on - strand, within trpCat 1317.389 kb on + strand, within trpCat 1317.389 kb on + strand, within trpCat 1317.643 kb on + strand, within trpCat 1317.684 kb on - strandat 1317.684 kb on - strandat 1317.766 kb on - strandat 1318.316 kb on + strand, within trpDat 1318.316 kb on + strand, within trpDat 1319.016 kb on - strand, within trpDat 1319.138 kb on - strand, within trpDat 1319.228 kb on + strand, within trpDat 1319.372 kb on - strandat 1319.455 kb on - strandat 1319.714 kb on + strand, within trpEat 1319.820 kb on + strand, within trpEat 1320.027 kb on + strand, within trpEat 1320.044 kb on + strand, within trpEat 1320.100 kb on - strand, within trpEat 1320.119 kb on - strand, within trpEat 1320.125 kb on + strand, within trpEat 1320.125 kb on + strand, within trpEat 1320.275 kb on - strand, within trpEat 1320.275 kb on - strand, within trpE

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Per-strain Table

Position Strand Gene LocusTag Fraction Acetate (C)
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1,317,035 - trpC b1262 0.43 +0.7
1,317,035 - trpC b1262 0.43 +2.2
1,317,113 - trpC b1262 0.49 +0.7
1,317,144 - trpC b1262 0.51 +0.2
1,317,153 + trpC b1262 0.52 -2.8
1,317,181 + trpC b1262 0.54 -4.1
1,317,305 - trpC b1262 0.63 +1.5
1,317,389 + trpC b1262 0.69 -3.1
1,317,389 + trpC b1262 0.69 -3.1
1,317,643 + trpC b1262 0.88 -4.1
1,317,684 - +0.5
1,317,684 - +1.2
1,317,766 - -2.2
1,318,316 + trpD b1263 0.32 -2.1
1,318,316 + trpD b1263 0.32 -2.7
1,319,016 - trpD b1263 0.75 +0.2
1,319,138 - trpD b1263 0.83 +0.2
1,319,228 + trpD b1263 0.89 +0.0
1,319,372 - -0.5
1,319,455 - +1.3
1,319,714 + trpE b1264 0.20 -1.6
1,319,820 + trpE b1264 0.26 -2.1
1,320,027 + trpE b1264 0.40 -2.5
1,320,044 + trpE b1264 0.41 -4.4
1,320,100 - trpE b1264 0.44 +0.2
1,320,119 - trpE b1264 0.45 +0.5
1,320,125 + trpE b1264 0.46 -2.5
1,320,125 + trpE b1264 0.46 -0.2
1,320,275 - trpE b1264 0.55 +0.2
1,320,275 - trpE b1264 0.55 +0.5

Or see this region's nucleotide sequence