Strain Fitness in Escherichia coli BW25113 around b3176

Experiment: Acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntleuU and secG are separated by 14 nucleotidessecG and glmM are separated by 227 nucleotidesglmM and folP overlap by 8 nucleotidesfolP and ftsH are separated by 89 nucleotides b3174: leuU - tRNA-Leu (NCBI), at 3,320,094 to 3,320,180 leuU b3175: secG - protein-export membrane protein (NCBI), at 3,320,195 to 3,320,527 secG b3176: glmM - phosphoglucosamine mutase (NCBI), at 3,320,755 to 3,322,092 glmM b3177: folP - 7,8-dihydropteroate synthase (VIMSS), at 3,322,085 to 3,322,933 folP b3178: ftsH - protease, ATP-dependent zinc-metallo (NCBI), at 3,323,023 to 3,324,957 ftsH Position (kb) 3320 3321 3322 3323Strain fitness (log2 ratio) -2 -1 0 1 2at 3319.757 kb on - strandat 3319.772 kb on - strandat 3319.799 kb on - strandat 3319.814 kb on - strandat 3319.814 kb on - strandat 3319.814 kb on - strandat 3319.817 kb on - strandat 3319.824 kb on - strandat 3319.829 kb on - strandat 3319.830 kb on - strandat 3319.834 kb on - strandat 3319.836 kb on - strandat 3319.844 kb on - strandat 3319.844 kb on - strandat 3319.844 kb on - strandat 3319.844 kb on - strandat 3319.844 kb on - strandat 3319.844 kb on - strandat 3319.844 kb on - strandat 3319.846 kb on - strandat 3319.846 kb on - strandat 3319.846 kb on - strandat 3319.849 kb on - strandat 3319.849 kb on - strandat 3319.851 kb on - strandat 3319.851 kb on - strandat 3319.852 kb on - strandat 3319.854 kb on - strandat 3319.854 kb on - strandat 3319.859 kb on - strandat 3319.859 kb on - strandat 3319.864 kb on - strandat 3319.864 kb on - strandat 3319.864 kb on - strandat 3319.880 kb on - strandat 3319.880 kb on - strandat 3319.882 kb on + strandat 3319.891 kb on - strandat 3319.891 kb on - strandat 3319.905 kb on - strandat 3319.905 kb on - strandat 3319.905 kb on - strandat 3319.905 kb on - strandat 3319.905 kb on - strandat 3319.915 kb on - strandat 3319.917 kb on - strandat 3319.917 kb on - strandat 3319.917 kb on - strandat 3319.957 kb on + strandat 3319.959 kb on + strandat 3319.978 kb on - strandat 3319.984 kb on - strandat 3319.984 kb on - strandat 3319.985 kb on - strandat 3319.985 kb on - strandat 3319.997 kb on - strandat 3319.997 kb on - strandat 3319.997 kb on - strandat 3319.998 kb on - strandat 3319.998 kb on - strandat 3319.998 kb on - strandat 3320.003 kb on - strandat 3320.003 kb on - strandat 3320.008 kb on - strandat 3320.013 kb on + strandat 3320.013 kb on + strandat 3320.013 kb on + strandat 3320.013 kb on + strandat 3320.016 kb on - strandat 3320.016 kb on - strandat 3320.017 kb on + strandat 3320.018 kb on - strandat 3320.018 kb on - strandat 3320.018 kb on - strandat 3320.018 kb on - strandat 3320.018 kb on - strandat 3320.021 kb on - strandat 3320.023 kb on - strandat 3320.025 kb on - strandat 3320.025 kb on - strandat 3320.032 kb on - strandat 3320.032 kb on - strandat 3320.037 kb on + strandat 3320.037 kb on + strandat 3320.040 kb on - strandat 3320.040 kb on - strandat 3320.045 kb on - strandat 3320.045 kb on - strandat 3320.056 kb on - strandat 3320.056 kb on - strandat 3320.211 kb on - strandat 3320.619 kb on - strandat 3320.619 kb on - strandat 3320.772 kb on - strandat 3320.808 kb on - strandat 3322.094 kb on - strandat 3322.095 kb on - strandat 3322.096 kb on - strandat 3322.096 kb on - strandat 3322.115 kb on - strandat 3322.944 kb on - strandat 3322.944 kb on - strandat 3323.027 kb on - strandat 3323.048 kb on - strandat 3323.048 kb on - strandat 3323.059 kb on - strandat 3323.059 kb on - strandat 3323.059 kb on - strandat 3323.074 kb on - strandat 3323.092 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Acetate (C)
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3,319,757 - +0.2
3,319,772 - +0.0
3,319,799 - +0.2
3,319,814 - -0.0
3,319,814 - -0.6
3,319,814 - -0.4
3,319,817 - +0.5
3,319,824 - +0.6
3,319,829 - +0.1
3,319,830 - +0.1
3,319,834 - +0.2
3,319,836 - -0.2
3,319,844 - +0.1
3,319,844 - +0.4
3,319,844 - +0.8
3,319,844 - +0.4
3,319,844 - +1.3
3,319,844 - +1.1
3,319,844 - +0.2
3,319,846 - -0.8
3,319,846 - -0.0
3,319,846 - -0.0
3,319,849 - -0.1
3,319,849 - +0.6
3,319,851 - -0.2
3,319,851 - +0.5
3,319,852 - +0.1
3,319,854 - -0.3
3,319,854 - -0.4
3,319,859 - +0.1
3,319,859 - +0.9
3,319,864 - +0.0
3,319,864 - +0.2
3,319,864 - -0.2
3,319,880 - -0.6
3,319,880 - -0.4
3,319,882 + -0.2
3,319,891 - +0.6
3,319,891 - +0.5
3,319,905 - +0.0
3,319,905 - -0.2
3,319,905 - +0.2
3,319,905 - -1.1
3,319,905 - -0.3
3,319,915 - +0.6
3,319,917 - +0.1
3,319,917 - +0.6
3,319,917 - +0.4
3,319,957 + +0.8
3,319,959 + -0.1
3,319,978 - +0.9
3,319,984 - -1.0
3,319,984 - +0.2
3,319,985 - -0.8
3,319,985 - -0.4
3,319,997 - +0.2
3,319,997 - +0.8
3,319,997 - +0.9
3,319,998 - +1.0
3,319,998 - -1.2
3,319,998 - +1.2
3,320,003 - -0.5
3,320,003 - +0.5
3,320,008 - -0.3
3,320,013 + +0.3
3,320,013 + -0.1
3,320,013 + -0.0
3,320,013 + +0.5
3,320,016 - -0.1
3,320,016 - -0.6
3,320,017 + +0.2
3,320,018 - -0.4
3,320,018 - -0.1
3,320,018 - -0.1
3,320,018 - +1.8
3,320,018 - -0.7
3,320,021 - -0.2
3,320,023 - +0.4
3,320,025 - -0.2
3,320,025 - -0.0
3,320,032 - +0.2
3,320,032 - -0.9
3,320,037 + -1.2
3,320,037 + -0.6
3,320,040 - +1.0
3,320,040 - +0.6
3,320,045 - +0.1
3,320,045 - +0.8
3,320,056 - +0.4
3,320,056 - +0.5
3,320,211 - +0.6
3,320,619 - -0.6
3,320,619 - -0.3
3,320,772 - -0.4
3,320,808 - -0.1
3,322,094 - +0.2
3,322,095 - +0.8
3,322,096 - -2.5
3,322,096 - +0.1
3,322,115 - -0.1
3,322,944 - +0.1
3,322,944 - -1.8
3,323,027 - +0.2
3,323,048 - -2.1
3,323,048 - -0.5
3,323,059 - -1.1
3,323,059 - -0.0
3,323,059 - -0.8
3,323,074 - -2.0
3,323,092 - -1.8

Or see this region's nucleotide sequence