Strain Fitness in Escherichia coli BW25113 around b1478

Experiment: Acetate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntfdnI and yddM are separated by 406 nucleotidesyddM and adhP are separated by 145 nucleotidesadhP and sfcA are separated by 133 nucleotides b1476: fdnI - formate dehydrogenase-N, cytochrome B556 (gamma) subunit, nitrate-inducible (NCBI), at 1,549,362 to 1,550,015 fdnI b1477: yddM - predicted DNA-binding transcriptional regulator (RefSeq), at 1,550,422 to 1,550,706 yddM b1478: adhP - alcohol dehydrogenase (VIMSS), at 1,550,852 to 1,551,862 adhP b1479: sfcA - NAD-linked malate dehydrogenase (malic enzyme) (VIMSS), at 1,551,996 to 1,553,693 sfcA Position (kb) 1550 1551 1552Strain fitness (log2 ratio) -1 0 1at 1550.056 kb on - strandat 1550.189 kb on - strandat 1550.189 kb on - strandat 1550.209 kb on - strandat 1550.806 kb on + strandat 1550.833 kb on - strandat 1551.011 kb on + strand, within adhPat 1551.036 kb on - strand, within adhPat 1551.421 kb on + strand, within adhPat 1551.752 kb on + strand, within adhPat 1551.859 kb on + strandat 1551.859 kb on + strandat 1551.871 kb on - strandat 1552.077 kb on + strandat 1552.077 kb on + strandat 1552.093 kb on + strandat 1552.254 kb on - strand, within sfcAat 1552.274 kb on - strand, within sfcAat 1552.501 kb on + strand, within sfcAat 1552.509 kb on - strand, within sfcAat 1552.509 kb on - strand, within sfcAat 1552.638 kb on - strand, within sfcAat 1552.638 kb on - strand, within sfcA

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Per-strain Table

Position Strand Gene LocusTag Fraction Acetate (C)
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1,550,056 - +0.4
1,550,189 - +0.3
1,550,189 - +0.3
1,550,209 - +0.6
1,550,806 + -0.6
1,550,833 - +0.1
1,551,011 + adhP b1478 0.16 -0.2
1,551,036 - adhP b1478 0.18 -0.2
1,551,421 + adhP b1478 0.56 -0.3
1,551,752 + adhP b1478 0.89 +0.0
1,551,859 + +0.3
1,551,859 + +1.1
1,551,871 - -0.0
1,552,077 + +0.7
1,552,077 + +0.5
1,552,093 + +0.7
1,552,254 - sfcA b1479 0.15 -0.2
1,552,274 - sfcA b1479 0.16 -0.6
1,552,501 + sfcA b1479 0.30 -0.1
1,552,509 - sfcA b1479 0.30 -1.0
1,552,509 - sfcA b1479 0.30 -0.2
1,552,638 - sfcA b1479 0.38 -0.7
1,552,638 - sfcA b1479 0.38 +1.1

Or see this region's nucleotide sequence