Experiment: Acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybaL and fsr are separated by 237 nucleotides fsr and ushA are separated by 217 nucleotides
b0478: ybaL - predicted transporter with NAD(P)-binding Rossmann-fold domain (NCBI), at 500,786 to 502,462
ybaL
b0479: fsr - predicted fosmidomycin efflux system (NCBI), at 502,700 to 503,920
fsr
b0480: ushA - UDP-sugar hydrolase (NCBI), at 504,138 to 505,790
ushA
Position (kb) 502
503
504 Strain fitness (log2 ratio) -1
0
1 at 501.927 kb on - strand, within ybaL at 501.986 kb on - strand, within ybaL at 502.033 kb on - strand, within ybaL at 502.051 kb on + strand, within ybaL at 502.105 kb on + strand, within ybaL at 502.154 kb on + strand, within ybaL at 502.155 kb on - strand, within ybaL at 502.155 kb on - strand, within ybaL at 502.293 kb on - strand, within ybaL at 502.293 kb on - strand, within ybaL at 502.346 kb on + strand at 502.346 kb on + strand at 502.384 kb on - strand at 502.384 kb on - strand at 502.437 kb on - strand at 502.656 kb on + strand at 502.816 kb on - strand at 502.990 kb on - strand, within fsr at 503.020 kb on + strand, within fsr at 503.084 kb on + strand, within fsr at 503.125 kb on - strand, within fsr at 503.125 kb on - strand, within fsr at 503.134 kb on + strand, within fsr at 503.134 kb on + strand, within fsr at 503.178 kb on - strand, within fsr at 503.275 kb on - strand, within fsr at 503.288 kb on - strand, within fsr at 503.288 kb on - strand, within fsr at 503.555 kb on - strand, within fsr at 503.567 kb on + strand, within fsr at 503.575 kb on - strand, within fsr at 503.604 kb on - strand, within fsr at 503.616 kb on - strand, within fsr at 503.730 kb on - strand, within fsr at 503.734 kb on - strand, within fsr at 503.734 kb on - strand, within fsr at 503.924 kb on - strand at 503.985 kb on + strand at 503.985 kb on + strand at 504.067 kb on + strand at 504.181 kb on + strand at 504.345 kb on + strand, within ushA at 504.510 kb on + strand, within ushA at 504.510 kb on + strand, within ushA at 504.582 kb on - strand, within ushA at 504.582 kb on - strand, within ushA at 504.597 kb on - strand, within ushA at 504.750 kb on - strand, within ushA at 504.820 kb on + strand, within ushA
Per-strain Table
Position Strand Gene LocusTag Fraction Acetate (C) remove 501,927 - ybaL b0478 0.68 -0.3 501,986 - ybaL b0478 0.72 +0.7 502,033 - ybaL b0478 0.74 +0.3 502,051 + ybaL b0478 0.75 +0.0 502,105 + ybaL b0478 0.79 +0.1 502,154 + ybaL b0478 0.82 +1.2 502,155 - ybaL b0478 0.82 -0.7 502,155 - ybaL b0478 0.82 +0.2 502,293 - ybaL b0478 0.90 +1.4 502,293 - ybaL b0478 0.90 +1.4 502,346 + +0.2 502,346 + -0.0 502,384 - +0.5 502,384 - +0.2 502,437 - +0.7 502,656 + +0.3 502,816 - -0.2 502,990 - fsr b0479 0.24 -0.9 503,020 + fsr b0479 0.26 -0.7 503,084 + fsr b0479 0.31 -0.5 503,125 - fsr b0479 0.35 -1.0 503,125 - fsr b0479 0.35 +0.0 503,134 + fsr b0479 0.36 +0.4 503,134 + fsr b0479 0.36 -1.1 503,178 - fsr b0479 0.39 -0.3 503,275 - fsr b0479 0.47 +0.3 503,288 - fsr b0479 0.48 +0.2 503,288 - fsr b0479 0.48 -0.5 503,555 - fsr b0479 0.70 -0.4 503,567 + fsr b0479 0.71 +1.7 503,575 - fsr b0479 0.72 +0.2 503,604 - fsr b0479 0.74 -0.1 503,616 - fsr b0479 0.75 -0.3 503,730 - fsr b0479 0.84 +0.1 503,734 - fsr b0479 0.85 +0.6 503,734 - fsr b0479 0.85 +0.4 503,924 - +1.4 503,985 + +0.7 503,985 + -0.3 504,067 + +0.7 504,181 + -0.2 504,345 + ushA b0480 0.13 +0.5 504,510 + ushA b0480 0.23 -0.9 504,510 + ushA b0480 0.23 +0.5 504,582 - ushA b0480 0.27 -0.9 504,582 - ushA b0480 0.27 +0.5 504,597 - ushA b0480 0.28 -1.1 504,750 - ushA b0480 0.37 -1.0 504,820 + ushA b0480 0.41 +0.5
Or see this region's nucleotide sequence