Experiment: Acetate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yahJ and yahK are separated by 376 nucleotides yahK and yahL are separated by 242 nucleotides
b0324: yahJ - deaminase (NCBI), at 340,349 to 341,731
yahJ
b0325: yahK - predicted oxidoreductase, Zn-dependent and NAD(P)-binding (NCBI), at 342,108 to 343,157
yahK
b0326: yahL - hypothetical protein (NCBI), at 343,400 to 344,215
yahL
Position (kb) 342
343
344 Strain fitness (log2 ratio) -1
0
1 at 341.124 kb on + strand, within yahJ at 341.139 kb on - strand, within yahJ at 341.141 kb on + strand, within yahJ at 341.385 kb on - strand, within yahJ at 341.385 kb on - strand, within yahJ at 341.530 kb on + strand, within yahJ at 341.530 kb on + strand, within yahJ at 341.632 kb on + strand at 341.649 kb on - strand at 341.708 kb on + strand at 341.983 kb on - strand at 341.997 kb on + strand at 341.997 kb on - strand at 342.031 kb on + strand at 342.082 kb on - strand at 342.086 kb on - strand at 342.091 kb on + strand at 342.091 kb on + strand at 342.136 kb on - strand at 342.169 kb on + strand at 342.219 kb on + strand, within yahK at 342.219 kb on + strand, within yahK at 342.257 kb on - strand, within yahK at 342.276 kb on - strand, within yahK at 342.322 kb on - strand, within yahK at 342.347 kb on + strand, within yahK at 342.361 kb on + strand, within yahK at 342.422 kb on + strand, within yahK at 342.445 kb on + strand, within yahK at 342.488 kb on - strand, within yahK at 342.493 kb on + strand, within yahK at 342.510 kb on + strand, within yahK at 342.525 kb on + strand, within yahK at 342.525 kb on + strand, within yahK at 342.714 kb on + strand, within yahK at 342.714 kb on + strand, within yahK at 342.906 kb on - strand, within yahK at 342.979 kb on + strand, within yahK at 342.979 kb on + strand, within yahK at 342.986 kb on + strand, within yahK at 342.997 kb on + strand, within yahK at 343.006 kb on + strand, within yahK at 343.032 kb on + strand, within yahK at 343.033 kb on + strand, within yahK at 343.033 kb on + strand, within yahK at 343.034 kb on + strand, within yahK at 343.040 kb on - strand, within yahK at 343.048 kb on - strand, within yahK at 343.056 kb on + strand at 343.056 kb on + strand at 343.056 kb on + strand at 343.093 kb on + strand at 343.093 kb on + strand at 343.096 kb on - strand at 343.116 kb on - strand at 343.146 kb on + strand at 343.146 kb on + strand at 343.180 kb on + strand at 343.191 kb on + strand at 343.223 kb on + strand at 343.235 kb on + strand at 343.235 kb on + strand at 343.248 kb on + strand at 343.282 kb on + strand at 343.293 kb on + strand at 343.293 kb on + strand at 343.293 kb on + strand at 343.295 kb on + strand at 343.303 kb on + strand at 343.313 kb on - strand at 343.318 kb on - strand at 343.328 kb on + strand at 343.328 kb on + strand at 343.340 kb on + strand at 343.614 kb on - strand, within yahL at 343.614 kb on - strand, within yahL at 343.617 kb on - strand, within yahL at 343.625 kb on - strand, within yahL at 343.625 kb on - strand, within yahL at 343.625 kb on - strand, within yahL at 343.625 kb on - strand, within yahL at 343.627 kb on - strand, within yahL at 343.633 kb on - strand, within yahL at 343.763 kb on + strand, within yahL at 343.767 kb on + strand, within yahL at 343.771 kb on - strand, within yahL at 343.775 kb on + strand, within yahL at 343.775 kb on + strand, within yahL at 343.775 kb on + strand, within yahL at 343.775 kb on + strand, within yahL at 343.819 kb on - strand, within yahL at 343.819 kb on - strand, within yahL at 343.833 kb on + strand, within yahL at 343.852 kb on + strand, within yahL at 343.981 kb on + strand, within yahL at 343.999 kb on + strand, within yahL at 344.077 kb on - strand, within yahL at 344.080 kb on - strand, within yahL at 344.085 kb on + strand, within yahL at 344.107 kb on + strand, within yahL
Per-strain Table
Position Strand Gene LocusTag Fraction Acetate (C) remove 341,124 + yahJ b0324 0.56 -0.2 341,139 - yahJ b0324 0.57 -0.2 341,141 + yahJ b0324 0.57 -1.2 341,385 - yahJ b0324 0.75 +0.4 341,385 - yahJ b0324 0.75 -0.2 341,530 + yahJ b0324 0.85 -1.1 341,530 + yahJ b0324 0.85 +1.3 341,632 + -0.8 341,649 - +0.8 341,708 + -1.0 341,983 - +1.0 341,997 + +0.1 341,997 - +0.7 342,031 + -0.1 342,082 - +0.4 342,086 - +0.6 342,091 + +0.2 342,091 + -0.5 342,136 - +0.2 342,169 + +0.1 342,219 + yahK b0325 0.11 +0.0 342,219 + yahK b0325 0.11 +0.4 342,257 - yahK b0325 0.14 -0.1 342,276 - yahK b0325 0.16 -0.2 342,322 - yahK b0325 0.20 +0.3 342,347 + yahK b0325 0.23 +1.3 342,361 + yahK b0325 0.24 +0.5 342,422 + yahK b0325 0.30 +0.3 342,445 + yahK b0325 0.32 +1.4 342,488 - yahK b0325 0.36 +0.0 342,493 + yahK b0325 0.37 +0.1 342,510 + yahK b0325 0.38 +0.1 342,525 + yahK b0325 0.40 +0.2 342,525 + yahK b0325 0.40 +1.6 342,714 + yahK b0325 0.58 +0.2 342,714 + yahK b0325 0.58 +0.2 342,906 - yahK b0325 0.76 +0.5 342,979 + yahK b0325 0.83 +0.6 342,979 + yahK b0325 0.83 +0.3 342,986 + yahK b0325 0.84 +0.2 342,997 + yahK b0325 0.85 -0.6 343,006 + yahK b0325 0.86 -0.2 343,032 + yahK b0325 0.88 +0.6 343,033 + yahK b0325 0.88 +1.0 343,033 + yahK b0325 0.88 +0.4 343,034 + yahK b0325 0.88 +0.9 343,040 - yahK b0325 0.89 +0.6 343,048 - yahK b0325 0.90 -0.6 343,056 + +0.1 343,056 + +0.3 343,056 + -0.6 343,093 + -0.7 343,093 + -0.7 343,096 - -0.7 343,116 - -0.8 343,146 + -1.3 343,146 + -0.2 343,180 + +0.1 343,191 + -0.1 343,223 + -0.1 343,235 + -0.1 343,235 + +0.3 343,248 + +0.4 343,282 + +0.5 343,293 + +0.6 343,293 + +0.2 343,293 + -0.2 343,295 + -0.4 343,303 + +0.6 343,313 - +0.3 343,318 - +0.4 343,328 + +0.3 343,328 + -1.7 343,340 + +0.3 343,614 - yahL b0326 0.26 -1.3 343,614 - yahL b0326 0.26 -0.4 343,617 - yahL b0326 0.27 -0.2 343,625 - yahL b0326 0.28 -0.1 343,625 - yahL b0326 0.28 +0.4 343,625 - yahL b0326 0.28 +1.0 343,625 - yahL b0326 0.28 -1.5 343,627 - yahL b0326 0.28 +0.4 343,633 - yahL b0326 0.29 -0.9 343,763 + yahL b0326 0.44 -0.5 343,767 + yahL b0326 0.45 +0.3 343,771 - yahL b0326 0.45 -0.1 343,775 + yahL b0326 0.46 -0.1 343,775 + yahL b0326 0.46 +0.5 343,775 + yahL b0326 0.46 +0.3 343,775 + yahL b0326 0.46 +1.3 343,819 - yahL b0326 0.51 -0.0 343,819 - yahL b0326 0.51 -0.1 343,833 + yahL b0326 0.53 +0.3 343,852 + yahL b0326 0.55 -0.7 343,981 + yahL b0326 0.71 -0.3 343,999 + yahL b0326 0.73 -0.4 344,077 - yahL b0326 0.83 -0.5 344,080 - yahL b0326 0.83 +0.7 344,085 + yahL b0326 0.84 -0.3 344,107 + yahL b0326 0.87 +0.2
Or see this region's nucleotide sequence