Experiment: KB with Palmatine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4905 and Psyr_4906 are separated by 202 nucleotides Psyr_4906 and Psyr_4907 are separated by 312 nucleotides Psyr_4907 and Psyr_4908 are separated by 143 nucleotides Psyr_4908 and Psyr_4909 are separated by 57 nucleotides
Psyr_4905: Psyr_4905 - conserved hypothetical protein, at 5,818,494 to 5,818,727
_4905
Psyr_4906: Psyr_4906 - lipoprotein, putative, at 5,818,930 to 5,819,208
_4906
Psyr_4907: Psyr_4907 - PAS, at 5,819,521 to 5,820,867
_4907
Psyr_4908: Psyr_4908 - conserved hypothetical protein, at 5,821,011 to 5,821,496
_4908
Psyr_4909: Psyr_4909 - gamma-aminobutyrate:proton symporter, AAT family, at 5,821,554 to 5,822,945
_4909
Position (kb) 5819
5820
5821 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5818.640 kb on + strand, within Psyr_4905 at 5818.640 kb on + strand, within Psyr_4905 at 5818.640 kb on + strand, within Psyr_4905 at 5818.641 kb on - strand, within Psyr_4905 at 5818.641 kb on - strand, within Psyr_4905 at 5818.641 kb on - strand, within Psyr_4905 at 5818.641 kb on - strand, within Psyr_4905 at 5818.641 kb on - strand, within Psyr_4905 at 5818.661 kb on - strand, within Psyr_4905 at 5818.661 kb on - strand, within Psyr_4905 at 5818.661 kb on - strand, within Psyr_4905 at 5818.661 kb on - strand, within Psyr_4905 at 5818.716 kb on + strand at 5818.728 kb on - strand at 5818.728 kb on - strand at 5818.728 kb on - strand at 5818.875 kb on + strand at 5818.875 kb on + strand at 5818.875 kb on + strand at 5818.903 kb on + strand at 5818.903 kb on + strand at 5818.903 kb on + strand at 5818.904 kb on - strand at 5818.904 kb on - strand at 5818.904 kb on - strand at 5819.255 kb on + strand at 5819.255 kb on + strand at 5819.255 kb on + strand at 5819.256 kb on - strand at 5819.256 kb on - strand at 5819.256 kb on - strand at 5819.256 kb on - strand at 5819.398 kb on + strand at 5819.398 kb on + strand at 5819.398 kb on + strand at 5819.425 kb on + strand at 5819.426 kb on - strand at 5819.429 kb on + strand at 5819.430 kb on - strand at 5819.431 kb on + strand at 5819.432 kb on - strand at 5819.432 kb on - strand at 5819.437 kb on + strand at 5819.491 kb on + strand at 5819.491 kb on + strand at 5819.491 kb on + strand at 5819.491 kb on + strand at 5819.492 kb on - strand at 5819.510 kb on - strand at 5819.520 kb on + strand at 5819.520 kb on + strand at 5819.520 kb on + strand at 5819.521 kb on - strand at 5819.521 kb on - strand at 5819.521 kb on - strand at 5819.532 kb on + strand at 5819.532 kb on + strand at 5819.533 kb on - strand at 5819.533 kb on - strand at 5819.570 kb on + strand at 5819.571 kb on - strand at 5819.755 kb on + strand, within Psyr_4907 at 5819.756 kb on - strand, within Psyr_4907 at 5819.854 kb on + strand, within Psyr_4907 at 5819.854 kb on + strand, within Psyr_4907 at 5819.903 kb on - strand, within Psyr_4907 at 5819.982 kb on + strand, within Psyr_4907 at 5819.983 kb on - strand, within Psyr_4907 at 5820.121 kb on + strand, within Psyr_4907 at 5820.121 kb on + strand, within Psyr_4907 at 5820.121 kb on + strand, within Psyr_4907 at 5820.180 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.220 kb on + strand, within Psyr_4907 at 5820.221 kb on - strand, within Psyr_4907 at 5820.221 kb on - strand, within Psyr_4907 at 5820.221 kb on - strand, within Psyr_4907 at 5820.221 kb on - strand, within Psyr_4907 at 5820.221 kb on - strand, within Psyr_4907 at 5820.221 kb on - strand, within Psyr_4907 at 5820.221 kb on - strand, within Psyr_4907 at 5820.221 kb on - strand, within Psyr_4907 at 5820.221 kb on - strand, within Psyr_4907 at 5820.221 kb on - strand, within Psyr_4907 at 5820.223 kb on - strand, within Psyr_4907 at 5820.253 kb on + strand, within Psyr_4907 at 5820.254 kb on - strand, within Psyr_4907 at 5820.334 kb on + strand, within Psyr_4907 at 5820.334 kb on + strand, within Psyr_4907 at 5820.334 kb on + strand, within Psyr_4907 at 5820.624 kb on + strand, within Psyr_4907 at 5820.624 kb on + strand, within Psyr_4907 at 5820.624 kb on + strand, within Psyr_4907 at 5820.625 kb on - strand, within Psyr_4907 at 5820.625 kb on - strand, within Psyr_4907 at 5820.625 kb on - strand, within Psyr_4907 at 5820.625 kb on - strand, within Psyr_4907 at 5820.917 kb on + strand at 5820.932 kb on - strand at 5821.166 kb on + strand, within Psyr_4908 at 5821.167 kb on - strand, within Psyr_4908 at 5821.167 kb on - strand, within Psyr_4908 at 5821.216 kb on - strand, within Psyr_4908 at 5821.380 kb on + strand, within Psyr_4908 at 5821.381 kb on - strand, within Psyr_4908 at 5821.381 kb on - strand, within Psyr_4908 at 5821.381 kb on - strand, within Psyr_4908 at 5821.381 kb on - strand, within Psyr_4908 at 5821.381 kb on - strand, within Psyr_4908 at 5821.381 kb on - strand, within Psyr_4908 at 5821.381 kb on - strand, within Psyr_4908 at 5821.443 kb on + strand, within Psyr_4908 at 5821.444 kb on - strand, within Psyr_4908 at 5821.444 kb on - strand, within Psyr_4908 at 5821.822 kb on + strand, within Psyr_4909 at 5821.822 kb on + strand, within Psyr_4909 at 5821.823 kb on - strand, within Psyr_4909 at 5821.823 kb on - strand, within Psyr_4909
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine 10 mM remove 5,818,640 + Psyr_4905 0.62 +0.1 5,818,640 + Psyr_4905 0.62 +1.0 5,818,640 + Psyr_4905 0.62 +0.7 5,818,641 - Psyr_4905 0.63 +0.1 5,818,641 - Psyr_4905 0.63 -0.3 5,818,641 - Psyr_4905 0.63 -1.0 5,818,641 - Psyr_4905 0.63 -0.5 5,818,641 - Psyr_4905 0.63 +0.0 5,818,661 - Psyr_4905 0.71 +0.8 5,818,661 - Psyr_4905 0.71 +0.4 5,818,661 - Psyr_4905 0.71 +0.6 5,818,661 - Psyr_4905 0.71 +0.8 5,818,716 + -0.1 5,818,728 - -0.2 5,818,728 - -2.5 5,818,728 - +0.7 5,818,875 + -1.5 5,818,875 + +0.3 5,818,875 + -1.1 5,818,903 + +0.5 5,818,903 + +0.8 5,818,903 + -0.1 5,818,904 - +0.9 5,818,904 - +0.4 5,818,904 - +2.9 5,819,255 + +0.8 5,819,255 + -0.2 5,819,255 + -0.1 5,819,256 - -0.2 5,819,256 - +0.6 5,819,256 - +0.4 5,819,256 - -0.3 5,819,398 + -0.5 5,819,398 + +0.4 5,819,398 + +0.4 5,819,425 + +1.0 5,819,426 - -1.8 5,819,429 + -0.7 5,819,430 - +1.0 5,819,431 + -0.1 5,819,432 - +0.8 5,819,432 - -1.9 5,819,437 + -0.1 5,819,491 + +0.8 5,819,491 + +0.4 5,819,491 + +1.0 5,819,491 + +0.3 5,819,492 - -0.4 5,819,510 - -0.8 5,819,520 + +0.2 5,819,520 + +0.2 5,819,520 + +1.0 5,819,521 - -0.3 5,819,521 - +1.8 5,819,521 - -0.5 5,819,532 + -1.1 5,819,532 + +0.6 5,819,533 - -0.5 5,819,533 - -0.3 5,819,570 + -1.2 5,819,571 - +1.6 5,819,755 + Psyr_4907 0.17 -1.8 5,819,756 - Psyr_4907 0.17 +0.3 5,819,854 + Psyr_4907 0.25 +0.9 5,819,854 + Psyr_4907 0.25 -0.0 5,819,903 - Psyr_4907 0.28 +1.6 5,819,982 + Psyr_4907 0.34 +0.6 5,819,983 - Psyr_4907 0.34 +2.1 5,820,121 + Psyr_4907 0.45 -0.4 5,820,121 + Psyr_4907 0.45 +3.4 5,820,121 + Psyr_4907 0.45 -0.3 5,820,180 + Psyr_4907 0.49 -3.0 5,820,220 + Psyr_4907 0.52 -0.7 5,820,220 + Psyr_4907 0.52 -2.9 5,820,220 + Psyr_4907 0.52 -2.3 5,820,220 + Psyr_4907 0.52 +0.4 5,820,220 + Psyr_4907 0.52 -0.6 5,820,220 + Psyr_4907 0.52 -1.2 5,820,220 + Psyr_4907 0.52 +0.8 5,820,220 + Psyr_4907 0.52 -0.8 5,820,220 + Psyr_4907 0.52 -0.2 5,820,220 + Psyr_4907 0.52 +0.1 5,820,220 + Psyr_4907 0.52 -1.6 5,820,220 + Psyr_4907 0.52 -0.5 5,820,220 + Psyr_4907 0.52 -1.7 5,820,220 + Psyr_4907 0.52 +1.3 5,820,220 + Psyr_4907 0.52 -0.1 5,820,220 + Psyr_4907 0.52 -0.1 5,820,220 + Psyr_4907 0.52 +0.0 5,820,221 - Psyr_4907 0.52 -1.7 5,820,221 - Psyr_4907 0.52 -0.7 5,820,221 - Psyr_4907 0.52 -3.0 5,820,221 - Psyr_4907 0.52 -0.1 5,820,221 - Psyr_4907 0.52 +0.7 5,820,221 - Psyr_4907 0.52 -1.2 5,820,221 - Psyr_4907 0.52 +0.1 5,820,221 - Psyr_4907 0.52 -3.0 5,820,221 - Psyr_4907 0.52 +0.4 5,820,221 - Psyr_4907 0.52 +0.3 5,820,223 - Psyr_4907 0.52 +1.3 5,820,253 + Psyr_4907 0.54 -0.8 5,820,254 - Psyr_4907 0.54 -1.4 5,820,334 + Psyr_4907 0.60 +0.8 5,820,334 + Psyr_4907 0.60 +1.3 5,820,334 + Psyr_4907 0.60 -1.6 5,820,624 + Psyr_4907 0.82 +0.8 5,820,624 + Psyr_4907 0.82 +0.7 5,820,624 + Psyr_4907 0.82 +0.6 5,820,625 - Psyr_4907 0.82 -0.9 5,820,625 - Psyr_4907 0.82 +4.4 5,820,625 - Psyr_4907 0.82 +0.7 5,820,625 - Psyr_4907 0.82 +0.8 5,820,917 + +0.8 5,820,932 - +0.3 5,821,166 + Psyr_4908 0.32 +0.0 5,821,167 - Psyr_4908 0.32 +0.3 5,821,167 - Psyr_4908 0.32 +0.6 5,821,216 - Psyr_4908 0.42 +0.1 5,821,380 + Psyr_4908 0.76 +0.9 5,821,381 - Psyr_4908 0.76 -1.1 5,821,381 - Psyr_4908 0.76 +0.9 5,821,381 - Psyr_4908 0.76 -0.5 5,821,381 - Psyr_4908 0.76 +0.1 5,821,381 - Psyr_4908 0.76 +1.3 5,821,381 - Psyr_4908 0.76 +0.7 5,821,381 - Psyr_4908 0.76 +1.1 5,821,443 + Psyr_4908 0.89 -0.6 5,821,444 - Psyr_4908 0.89 +0.5 5,821,444 - Psyr_4908 0.89 -1.0 5,821,822 + Psyr_4909 0.19 -0.3 5,821,822 + Psyr_4909 0.19 -0.5 5,821,823 - Psyr_4909 0.19 -0.5 5,821,823 - Psyr_4909 0.19 +0.1
Or see this region's nucleotide sequence