Experiment: KB with Palmatine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4713 and Psyr_4714 are separated by 15 nucleotides Psyr_4714 and Psyr_4715 overlap by 4 nucleotides
Psyr_4713: Psyr_4713 - Sarcosine oxidase, beta subunit, heterotetrameric, at 5,584,702 to 5,585,952
_4713
Psyr_4714: Psyr_4714 - Sarcosine oxidase, delta subunit, heterotetrameric, at 5,585,968 to 5,586,264
_4714
Psyr_4715: Psyr_4715 - Sarcosine oxidase, alpha subunit, heterotetrameric, at 5,586,261 to 5,589,281
_4715
Position (kb) 5585
5586
5587 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5584.979 kb on - strand, within Psyr_4713 at 5585.026 kb on + strand, within Psyr_4713 at 5585.026 kb on + strand, within Psyr_4713 at 5585.027 kb on - strand, within Psyr_4713 at 5585.027 kb on - strand, within Psyr_4713 at 5585.027 kb on - strand, within Psyr_4713 at 5585.027 kb on - strand, within Psyr_4713 at 5585.056 kb on + strand, within Psyr_4713 at 5585.057 kb on - strand, within Psyr_4713 at 5585.548 kb on + strand, within Psyr_4713 at 5585.548 kb on + strand, within Psyr_4713 at 5585.548 kb on + strand, within Psyr_4713 at 5585.549 kb on - strand, within Psyr_4713 at 5585.549 kb on - strand, within Psyr_4713 at 5585.976 kb on + strand at 5585.976 kb on + strand at 5585.976 kb on + strand at 5585.977 kb on - strand at 5585.977 kb on - strand at 5585.977 kb on - strand at 5585.977 kb on - strand at 5585.977 kb on - strand at 5586.094 kb on + strand, within Psyr_4714 at 5586.094 kb on + strand, within Psyr_4714 at 5586.094 kb on + strand, within Psyr_4714 at 5586.094 kb on + strand, within Psyr_4714 at 5586.094 kb on + strand, within Psyr_4714 at 5586.095 kb on - strand, within Psyr_4714 at 5586.095 kb on - strand, within Psyr_4714 at 5586.095 kb on - strand, within Psyr_4714 at 5586.095 kb on - strand, within Psyr_4714 at 5586.095 kb on - strand, within Psyr_4714 at 5586.095 kb on - strand, within Psyr_4714 at 5586.095 kb on - strand, within Psyr_4714 at 5586.166 kb on + strand, within Psyr_4714 at 5586.260 kb on + strand at 5586.260 kb on + strand at 5586.323 kb on + strand at 5586.342 kb on + strand at 5586.343 kb on - strand at 5586.343 kb on - strand at 5586.343 kb on - strand at 5586.420 kb on + strand at 5586.421 kb on - strand at 5586.421 kb on - strand at 5586.537 kb on + strand at 5586.537 kb on + strand at 5586.642 kb on + strand, within Psyr_4715 at 5586.643 kb on - strand, within Psyr_4715 at 5586.643 kb on - strand, within Psyr_4715 at 5586.645 kb on + strand, within Psyr_4715 at 5586.645 kb on + strand, within Psyr_4715 at 5586.645 kb on + strand, within Psyr_4715 at 5586.660 kb on + strand, within Psyr_4715 at 5586.661 kb on - strand, within Psyr_4715 at 5586.684 kb on + strand, within Psyr_4715 at 5586.684 kb on + strand, within Psyr_4715 at 5586.685 kb on - strand, within Psyr_4715 at 5586.693 kb on + strand, within Psyr_4715 at 5586.693 kb on + strand, within Psyr_4715 at 5586.693 kb on + strand, within Psyr_4715 at 5586.693 kb on + strand, within Psyr_4715 at 5586.693 kb on + strand, within Psyr_4715 at 5586.693 kb on + strand, within Psyr_4715 at 5586.694 kb on - strand, within Psyr_4715 at 5586.694 kb on - strand, within Psyr_4715 at 5586.694 kb on - strand, within Psyr_4715 at 5586.694 kb on - strand, within Psyr_4715 at 5586.694 kb on - strand, within Psyr_4715 at 5586.694 kb on - strand, within Psyr_4715 at 5586.750 kb on + strand, within Psyr_4715 at 5586.750 kb on + strand, within Psyr_4715 at 5586.750 kb on + strand, within Psyr_4715 at 5586.751 kb on - strand, within Psyr_4715 at 5586.751 kb on - strand, within Psyr_4715 at 5587.016 kb on + strand, within Psyr_4715 at 5587.017 kb on - strand, within Psyr_4715 at 5587.017 kb on - strand, within Psyr_4715 at 5587.017 kb on - strand, within Psyr_4715 at 5587.133 kb on + strand, within Psyr_4715 at 5587.156 kb on - strand, within Psyr_4715 at 5587.207 kb on - strand, within Psyr_4715 at 5587.207 kb on - strand, within Psyr_4715 at 5587.207 kb on - strand, within Psyr_4715 at 5587.207 kb on - strand, within Psyr_4715 at 5587.207 kb on - strand, within Psyr_4715 at 5587.207 kb on - strand, within Psyr_4715 at 5587.219 kb on - strand, within Psyr_4715
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine 10 mM remove 5,584,979 - Psyr_4713 0.22 +0.0 5,585,026 + Psyr_4713 0.26 +0.4 5,585,026 + Psyr_4713 0.26 +0.2 5,585,027 - Psyr_4713 0.26 +1.2 5,585,027 - Psyr_4713 0.26 +2.5 5,585,027 - Psyr_4713 0.26 -0.9 5,585,027 - Psyr_4713 0.26 -2.8 5,585,056 + Psyr_4713 0.28 +0.1 5,585,057 - Psyr_4713 0.28 +0.4 5,585,548 + Psyr_4713 0.68 +1.5 5,585,548 + Psyr_4713 0.68 -1.2 5,585,548 + Psyr_4713 0.68 -0.3 5,585,549 - Psyr_4713 0.68 +0.9 5,585,549 - Psyr_4713 0.68 +0.8 5,585,976 + +2.0 5,585,976 + -0.2 5,585,976 + +3.5 5,585,977 - -0.1 5,585,977 - -1.3 5,585,977 - +1.2 5,585,977 - -1.5 5,585,977 - -0.3 5,586,094 + Psyr_4714 0.42 +1.2 5,586,094 + Psyr_4714 0.42 +1.1 5,586,094 + Psyr_4714 0.42 -0.2 5,586,094 + Psyr_4714 0.42 -2.9 5,586,094 + Psyr_4714 0.42 +1.2 5,586,095 - Psyr_4714 0.43 -0.3 5,586,095 - Psyr_4714 0.43 -0.2 5,586,095 - Psyr_4714 0.43 +0.7 5,586,095 - Psyr_4714 0.43 -1.3 5,586,095 - Psyr_4714 0.43 +3.1 5,586,095 - Psyr_4714 0.43 -0.8 5,586,095 - Psyr_4714 0.43 +1.4 5,586,166 + Psyr_4714 0.67 -2.2 5,586,260 + +2.3 5,586,260 + -1.1 5,586,323 + +2.8 5,586,342 + -0.8 5,586,343 - +0.3 5,586,343 - -0.6 5,586,343 - -1.3 5,586,420 + -1.3 5,586,421 - +0.8 5,586,421 - +0.7 5,586,537 + +1.4 5,586,537 + +0.0 5,586,642 + Psyr_4715 0.13 +0.8 5,586,643 - Psyr_4715 0.13 +0.8 5,586,643 - Psyr_4715 0.13 +0.4 5,586,645 + Psyr_4715 0.13 -0.8 5,586,645 + Psyr_4715 0.13 +0.9 5,586,645 + Psyr_4715 0.13 -1.9 5,586,660 + Psyr_4715 0.13 -0.6 5,586,661 - Psyr_4715 0.13 +1.5 5,586,684 + Psyr_4715 0.14 +1.2 5,586,684 + Psyr_4715 0.14 -1.0 5,586,685 - Psyr_4715 0.14 +1.0 5,586,693 + Psyr_4715 0.14 -1.3 5,586,693 + Psyr_4715 0.14 +1.4 5,586,693 + Psyr_4715 0.14 +0.9 5,586,693 + Psyr_4715 0.14 -0.4 5,586,693 + Psyr_4715 0.14 +1.1 5,586,693 + Psyr_4715 0.14 +0.2 5,586,694 - Psyr_4715 0.14 +0.7 5,586,694 - Psyr_4715 0.14 +0.7 5,586,694 - Psyr_4715 0.14 +0.9 5,586,694 - Psyr_4715 0.14 -0.1 5,586,694 - Psyr_4715 0.14 -1.0 5,586,694 - Psyr_4715 0.14 +2.2 5,586,750 + Psyr_4715 0.16 +2.2 5,586,750 + Psyr_4715 0.16 -2.1 5,586,750 + Psyr_4715 0.16 -0.6 5,586,751 - Psyr_4715 0.16 +1.0 5,586,751 - Psyr_4715 0.16 -0.1 5,587,016 + Psyr_4715 0.25 +0.3 5,587,017 - Psyr_4715 0.25 +0.4 5,587,017 - Psyr_4715 0.25 -0.1 5,587,017 - Psyr_4715 0.25 -2.1 5,587,133 + Psyr_4715 0.29 -0.4 5,587,156 - Psyr_4715 0.30 +1.8 5,587,207 - Psyr_4715 0.31 +3.7 5,587,207 - Psyr_4715 0.31 +0.8 5,587,207 - Psyr_4715 0.31 -1.1 5,587,207 - Psyr_4715 0.31 +0.5 5,587,207 - Psyr_4715 0.31 -0.4 5,587,207 - Psyr_4715 0.31 +0.5 5,587,219 - Psyr_4715 0.32 +0.1
Or see this region's nucleotide sequence