Experiment: KB with Palmatine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4162 and Psyr_4163 are separated by 231 nucleotides Psyr_4163 and Psyr_4164 are separated by 205 nucleotides Psyr_4164 and Psyr_4165 are separated by 14 nucleotides
Psyr_4162: Psyr_4162 - rod shape-determining protein MreC, at 4,951,291 to 4,952,364
_4162
Psyr_4163: Psyr_4163 - rod shape-determining protein MreB, at 4,952,596 to 4,953,633
_4163
Psyr_4164: Psyr_4164 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, at 4,953,839 to 4,954,126
_4164
Psyr_4165: Psyr_4165 - aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A, at 4,954,141 to 4,955,592
_4165
Position (kb) 4952
4953
4954 Strain fitness (log2 ratio) -1
0
1
2 at 4952.410 kb on - strand at 4952.476 kb on - strand at 4952.506 kb on - strand at 4952.538 kb on - strand at 4952.538 kb on - strand at 4952.544 kb on - strand at 4952.544 kb on - strand at 4952.544 kb on - strand at 4952.544 kb on - strand at 4952.544 kb on - strand at 4952.564 kb on - strand at 4952.564 kb on - strand at 4952.564 kb on - strand at 4952.598 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine 10 mM remove 4,952,410 - -1.1 4,952,476 - -0.5 4,952,506 - +0.2 4,952,538 - -0.5 4,952,538 - -1.3 4,952,544 - +0.8 4,952,544 - -0.5 4,952,544 - -0.3 4,952,544 - -0.3 4,952,544 - +1.8 4,952,564 - -1.0 4,952,564 - -0.4 4,952,564 - +1.4 4,952,598 - +1.3
Or see this region's nucleotide sequence