Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4057

Experiment: KB with Palmatine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4056 and Psyr_4057 are separated by 74 nucleotidesPsyr_4057 and Psyr_4058 are separated by 95 nucleotidesPsyr_4058 and Psyr_4059 are separated by 191 nucleotides Psyr_4056: Psyr_4056 - dehydrogenase, putative, at 4,838,599 to 4,839,591 _4056 Psyr_4057: Psyr_4057 - regulatory protein, LysR:LysR, substrate-binding protein, at 4,839,666 to 4,840,565 _4057 Psyr_4058: Psyr_4058 - Lysine exporter protein (LYSE/YGGA), at 4,840,661 to 4,841,263 _4058 Psyr_4059: Psyr_4059 - Superoxide dismutase, at 4,841,455 to 4,842,036 _4059 Position (kb) 4839 4840 4841Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4838.672 kb on + strandat 4838.681 kb on + strandat 4838.751 kb on + strand, within Psyr_4056at 4838.751 kb on + strand, within Psyr_4056at 4838.751 kb on + strand, within Psyr_4056at 4838.751 kb on + strand, within Psyr_4056at 4838.751 kb on + strand, within Psyr_4056at 4838.751 kb on + strand, within Psyr_4056at 4838.751 kb on + strand, within Psyr_4056at 4838.752 kb on - strand, within Psyr_4056at 4838.752 kb on - strand, within Psyr_4056at 4838.752 kb on - strand, within Psyr_4056at 4838.810 kb on + strand, within Psyr_4056at 4838.810 kb on + strand, within Psyr_4056at 4838.822 kb on + strand, within Psyr_4056at 4838.870 kb on + strand, within Psyr_4056at 4838.870 kb on + strand, within Psyr_4056at 4838.870 kb on + strand, within Psyr_4056at 4838.870 kb on + strand, within Psyr_4056at 4838.871 kb on - strand, within Psyr_4056at 4838.871 kb on - strand, within Psyr_4056at 4838.871 kb on - strand, within Psyr_4056at 4838.871 kb on - strand, within Psyr_4056at 4838.871 kb on - strand, within Psyr_4056at 4838.871 kb on - strand, within Psyr_4056at 4838.871 kb on - strand, within Psyr_4056at 4838.908 kb on - strand, within Psyr_4056at 4838.918 kb on + strand, within Psyr_4056at 4838.918 kb on + strand, within Psyr_4056at 4838.918 kb on + strand, within Psyr_4056at 4838.919 kb on - strand, within Psyr_4056at 4838.919 kb on - strand, within Psyr_4056at 4839.019 kb on + strand, within Psyr_4056at 4839.069 kb on + strand, within Psyr_4056at 4839.069 kb on + strand, within Psyr_4056at 4839.069 kb on + strand, within Psyr_4056at 4839.070 kb on - strand, within Psyr_4056at 4839.070 kb on - strand, within Psyr_4056at 4839.070 kb on - strand, within Psyr_4056at 4839.070 kb on - strand, within Psyr_4056at 4839.070 kb on - strand, within Psyr_4056at 4839.164 kb on + strand, within Psyr_4056at 4839.164 kb on + strand, within Psyr_4056at 4839.164 kb on + strand, within Psyr_4056at 4839.165 kb on - strand, within Psyr_4056at 4839.165 kb on - strand, within Psyr_4056at 4839.165 kb on - strand, within Psyr_4056at 4839.245 kb on + strand, within Psyr_4056at 4839.425 kb on + strand, within Psyr_4056at 4839.593 kb on + strandat 4839.645 kb on + strandat 4839.645 kb on + strandat 4839.645 kb on + strandat 4839.766 kb on + strand, within Psyr_4057at 4839.766 kb on + strand, within Psyr_4057at 4839.767 kb on - strand, within Psyr_4057at 4839.782 kb on + strand, within Psyr_4057at 4839.782 kb on + strand, within Psyr_4057at 4839.882 kb on - strand, within Psyr_4057at 4839.882 kb on - strand, within Psyr_4057at 4839.953 kb on - strand, within Psyr_4057at 4840.656 kb on + strandat 4840.656 kb on + strandat 4840.656 kb on + strandat 4840.656 kb on + strandat 4840.657 kb on - strandat 4840.657 kb on - strandat 4840.657 kb on - strandat 4840.657 kb on - strandat 4840.660 kb on + strandat 4840.660 kb on + strandat 4840.661 kb on - strandat 4840.661 kb on - strandat 4840.661 kb on - strandat 4840.661 kb on - strandat 4840.673 kb on + strandat 4840.674 kb on - strandat 4840.674 kb on - strandat 4840.674 kb on - strandat 4840.737 kb on + strand, within Psyr_4058at 4840.792 kb on + strand, within Psyr_4058at 4840.793 kb on - strand, within Psyr_4058at 4840.893 kb on + strand, within Psyr_4058at 4840.894 kb on - strand, within Psyr_4058at 4841.036 kb on + strand, within Psyr_4058at 4841.036 kb on + strand, within Psyr_4058at 4841.036 kb on + strand, within Psyr_4058at 4841.036 kb on + strand, within Psyr_4058at 4841.037 kb on - strand, within Psyr_4058at 4841.037 kb on - strand, within Psyr_4058at 4841.037 kb on - strand, within Psyr_4058at 4841.037 kb on - strand, within Psyr_4058at 4841.037 kb on - strand, within Psyr_4058at 4841.037 kb on - strand, within Psyr_4058at 4841.049 kb on + strand, within Psyr_4058at 4841.049 kb on + strand, within Psyr_4058at 4841.049 kb on + strand, within Psyr_4058at 4841.050 kb on - strand, within Psyr_4058at 4841.050 kb on - strand, within Psyr_4058at 4841.052 kb on + strand, within Psyr_4058at 4841.053 kb on - strand, within Psyr_4058at 4841.100 kb on + strand, within Psyr_4058at 4841.100 kb on + strand, within Psyr_4058at 4841.101 kb on - strand, within Psyr_4058at 4841.101 kb on - strand, within Psyr_4058at 4841.101 kb on - strand, within Psyr_4058at 4841.101 kb on - strand, within Psyr_4058at 4841.101 kb on - strand, within Psyr_4058at 4841.345 kb on + strandat 4841.345 kb on + strandat 4841.345 kb on + strandat 4841.345 kb on + strandat 4841.345 kb on + strandat 4841.346 kb on - strandat 4841.346 kb on - strandat 4841.346 kb on - strandat 4841.347 kb on + strandat 4841.374 kb on + strandat 4841.374 kb on + strandat 4841.374 kb on + strandat 4841.395 kb on + strandat 4841.395 kb on + strandat 4841.395 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Palmatine 10 mM
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4,838,672 + -0.4
4,838,681 + -3.3
4,838,751 + Psyr_4056 0.15 -0.2
4,838,751 + Psyr_4056 0.15 -1.8
4,838,751 + Psyr_4056 0.15 +1.2
4,838,751 + Psyr_4056 0.15 +0.1
4,838,751 + Psyr_4056 0.15 -1.8
4,838,751 + Psyr_4056 0.15 +1.7
4,838,751 + Psyr_4056 0.15 +0.1
4,838,752 - Psyr_4056 0.15 +1.1
4,838,752 - Psyr_4056 0.15 +0.2
4,838,752 - Psyr_4056 0.15 +0.8
4,838,810 + Psyr_4056 0.21 -0.2
4,838,810 + Psyr_4056 0.21 +0.4
4,838,822 + Psyr_4056 0.22 +0.5
4,838,870 + Psyr_4056 0.27 +0.4
4,838,870 + Psyr_4056 0.27 +2.8
4,838,870 + Psyr_4056 0.27 -0.6
4,838,870 + Psyr_4056 0.27 +0.7
4,838,871 - Psyr_4056 0.27 -0.1
4,838,871 - Psyr_4056 0.27 -0.2
4,838,871 - Psyr_4056 0.27 +0.9
4,838,871 - Psyr_4056 0.27 -0.1
4,838,871 - Psyr_4056 0.27 +1.2
4,838,871 - Psyr_4056 0.27 -2.0
4,838,871 - Psyr_4056 0.27 -0.3
4,838,908 - Psyr_4056 0.31 -0.7
4,838,918 + Psyr_4056 0.32 -0.5
4,838,918 + Psyr_4056 0.32 +1.2
4,838,918 + Psyr_4056 0.32 +0.4
4,838,919 - Psyr_4056 0.32 -1.2
4,838,919 - Psyr_4056 0.32 -1.3
4,839,019 + Psyr_4056 0.42 -1.5
4,839,069 + Psyr_4056 0.47 -0.2
4,839,069 + Psyr_4056 0.47 +0.7
4,839,069 + Psyr_4056 0.47 +2.7
4,839,070 - Psyr_4056 0.47 +0.1
4,839,070 - Psyr_4056 0.47 +0.2
4,839,070 - Psyr_4056 0.47 -0.1
4,839,070 - Psyr_4056 0.47 -1.1
4,839,070 - Psyr_4056 0.47 +1.5
4,839,164 + Psyr_4056 0.57 -0.8
4,839,164 + Psyr_4056 0.57 +2.2
4,839,164 + Psyr_4056 0.57 +1.5
4,839,165 - Psyr_4056 0.57 +1.2
4,839,165 - Psyr_4056 0.57 +0.1
4,839,165 - Psyr_4056 0.57 -0.5
4,839,245 + Psyr_4056 0.65 +0.1
4,839,425 + Psyr_4056 0.83 -1.8
4,839,593 + +0.2
4,839,645 + -0.4
4,839,645 + +0.8
4,839,645 + +0.2
4,839,766 + Psyr_4057 0.11 -1.5
4,839,766 + Psyr_4057 0.11 -1.1
4,839,767 - Psyr_4057 0.11 -0.3
4,839,782 + Psyr_4057 0.13 -2.2
4,839,782 + Psyr_4057 0.13 -2.3
4,839,882 - Psyr_4057 0.24 -0.4
4,839,882 - Psyr_4057 0.24 -3.4
4,839,953 - Psyr_4057 0.32 +0.5
4,840,656 + +0.4
4,840,656 + -0.6
4,840,656 + +1.9
4,840,656 + -1.0
4,840,657 - -0.4
4,840,657 - +0.7
4,840,657 - -0.5
4,840,657 - -0.8
4,840,660 + +0.7
4,840,660 + -0.2
4,840,661 - -2.6
4,840,661 - -2.3
4,840,661 - -0.5
4,840,661 - -1.0
4,840,673 + +1.1
4,840,674 - -1.7
4,840,674 - -2.5
4,840,674 - -1.5
4,840,737 + Psyr_4058 0.13 -0.2
4,840,792 + Psyr_4058 0.22 -0.8
4,840,793 - Psyr_4058 0.22 +0.2
4,840,893 + Psyr_4058 0.38 -2.1
4,840,894 - Psyr_4058 0.39 +1.2
4,841,036 + Psyr_4058 0.62 +0.2
4,841,036 + Psyr_4058 0.62 +2.2
4,841,036 + Psyr_4058 0.62 -1.2
4,841,036 + Psyr_4058 0.62 -0.7
4,841,037 - Psyr_4058 0.62 -0.7
4,841,037 - Psyr_4058 0.62 -0.5
4,841,037 - Psyr_4058 0.62 +1.2
4,841,037 - Psyr_4058 0.62 -0.8
4,841,037 - Psyr_4058 0.62 -3.9
4,841,037 - Psyr_4058 0.62 -1.1
4,841,049 + Psyr_4058 0.64 +0.1
4,841,049 + Psyr_4058 0.64 +0.9
4,841,049 + Psyr_4058 0.64 -1.4
4,841,050 - Psyr_4058 0.65 -1.9
4,841,050 - Psyr_4058 0.65 -1.9
4,841,052 + Psyr_4058 0.65 +1.2
4,841,053 - Psyr_4058 0.65 -0.1
4,841,100 + Psyr_4058 0.73 -0.6
4,841,100 + Psyr_4058 0.73 +0.6
4,841,101 - Psyr_4058 0.73 -1.9
4,841,101 - Psyr_4058 0.73 +0.2
4,841,101 - Psyr_4058 0.73 -2.5
4,841,101 - Psyr_4058 0.73 -0.1
4,841,101 - Psyr_4058 0.73 -0.5
4,841,345 + -1.1
4,841,345 + +0.4
4,841,345 + +2.2
4,841,345 + +1.3
4,841,345 + -2.3
4,841,346 - +0.7
4,841,346 - -1.4
4,841,346 - +0.0
4,841,347 + -0.3
4,841,374 + -1.8
4,841,374 + +3.5
4,841,374 + -1.4
4,841,395 + +1.2
4,841,395 + +2.3
4,841,395 + +0.3

Or see this region's nucleotide sequence