Experiment: KB with Palmatine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3933 and Psyr_3934 are separated by 22 nucleotides Psyr_3934 and Psyr_3935 are separated by 124 nucleotides Psyr_3935 and Psyr_3936 are separated by 10 nucleotides
Psyr_3933: Psyr_3933 - conserved hypothetical protein, at 4,679,019 to 4,679,318
_3933
Psyr_3934: Psyr_3934 - Short-chain dehydrogenase/reductase SDR, at 4,679,341 to 4,680,090
_3934
Psyr_3935: Psyr_3935 - Short-chain dehydrogenase/reductase SDR, at 4,680,215 to 4,680,976
_3935
Psyr_3936: Psyr_3936 - General substrate transporter:Major facilitator superfamily, at 4,680,987 to 4,682,327
_3936
Position (kb) 4680
4681 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4679.226 kb on - strand, within Psyr_3933 at 4679.416 kb on + strand, within Psyr_3934 at 4679.775 kb on + strand, within Psyr_3934 at 4680.015 kb on - strand, within Psyr_3934 at 4680.129 kb on - strand at 4680.273 kb on + strand at 4680.273 kb on + strand at 4680.520 kb on - strand, within Psyr_3935 at 4680.520 kb on - strand, within Psyr_3935 at 4680.543 kb on + strand, within Psyr_3935 at 4680.544 kb on - strand, within Psyr_3935 at 4680.544 kb on - strand, within Psyr_3935 at 4680.724 kb on - strand, within Psyr_3935 at 4680.968 kb on - strand at 4681.066 kb on + strand at 4681.066 kb on + strand at 4681.067 kb on - strand at 4681.228 kb on + strand, within Psyr_3936 at 4681.229 kb on - strand, within Psyr_3936 at 4681.262 kb on - strand, within Psyr_3936 at 4681.262 kb on - strand, within Psyr_3936 at 4681.262 kb on - strand, within Psyr_3936 at 4681.262 kb on - strand, within Psyr_3936 at 4681.394 kb on - strand, within Psyr_3936 at 4681.855 kb on + strand, within Psyr_3936 at 4681.856 kb on - strand, within Psyr_3936 at 4681.856 kb on - strand, within Psyr_3936 at 4681.856 kb on - strand, within Psyr_3936 at 4681.903 kb on + strand, within Psyr_3936 at 4681.903 kb on + strand, within Psyr_3936 at 4681.904 kb on - strand, within Psyr_3936 at 4681.904 kb on - strand, within Psyr_3936 at 4681.919 kb on - strand, within Psyr_3936 at 4681.919 kb on - strand, within Psyr_3936 at 4681.919 kb on - strand, within Psyr_3936 at 4681.919 kb on - strand, within Psyr_3936
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine 10 mM remove 4,679,226 - Psyr_3933 0.69 -1.8 4,679,416 + Psyr_3934 0.10 +3.4 4,679,775 + Psyr_3934 0.58 +0.7 4,680,015 - Psyr_3934 0.90 +0.5 4,680,129 - +0.3 4,680,273 + -1.0 4,680,273 + -1.8 4,680,520 - Psyr_3935 0.40 +3.2 4,680,520 - Psyr_3935 0.40 +1.2 4,680,543 + Psyr_3935 0.43 +1.5 4,680,544 - Psyr_3935 0.43 -3.5 4,680,544 - Psyr_3935 0.43 -0.7 4,680,724 - Psyr_3935 0.67 +0.5 4,680,968 - -1.3 4,681,066 + -1.3 4,681,066 + -1.8 4,681,067 - -2.0 4,681,228 + Psyr_3936 0.18 +0.4 4,681,229 - Psyr_3936 0.18 +0.0 4,681,262 - Psyr_3936 0.21 +2.0 4,681,262 - Psyr_3936 0.21 -0.4 4,681,262 - Psyr_3936 0.21 +0.7 4,681,262 - Psyr_3936 0.21 -0.5 4,681,394 - Psyr_3936 0.30 +1.7 4,681,855 + Psyr_3936 0.65 -0.9 4,681,856 - Psyr_3936 0.65 +0.2 4,681,856 - Psyr_3936 0.65 -0.0 4,681,856 - Psyr_3936 0.65 +2.2 4,681,903 + Psyr_3936 0.68 -0.7 4,681,903 + Psyr_3936 0.68 -0.5 4,681,904 - Psyr_3936 0.68 -2.0 4,681,904 - Psyr_3936 0.68 -1.3 4,681,919 - Psyr_3936 0.70 -1.3 4,681,919 - Psyr_3936 0.70 +2.8 4,681,919 - Psyr_3936 0.70 -0.0 4,681,919 - Psyr_3936 0.70 +1.7
Or see this region's nucleotide sequence