Experiment: KB with Palmatine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3869 and Psyr_3870 are separated by 158 nucleotides Psyr_3870 and Psyr_3871 are separated by 232 nucleotides Psyr_3871 and Psyr_3872 are separated by 670 nucleotides
Psyr_3869: Psyr_3869 - phage repressor protein, Serine peptidase, MEROPS family S24, at 4,607,928 to 4,608,584
_3869
Psyr_3870: Psyr_3870 - SEC-C motif protein, at 4,608,743 to 4,608,943
_3870
Psyr_3871: Psyr_3871 - Penicillin amidase, at 4,609,176 to 4,611,650
_3871
Psyr_3872: Psyr_3872 - conserved hypothetical protein, at 4,612,321 to 4,613,367
_3872
Position (kb) 4609
4610
4611
4612 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4608.567 kb on - strand at 4608.567 kb on - strand at 4608.638 kb on + strand at 4608.725 kb on - strand at 4608.819 kb on + strand, within Psyr_3870 at 4608.819 kb on + strand, within Psyr_3870 at 4608.819 kb on + strand, within Psyr_3870 at 4608.819 kb on + strand, within Psyr_3870 at 4608.819 kb on + strand, within Psyr_3870 at 4608.819 kb on + strand, within Psyr_3870 at 4608.819 kb on + strand, within Psyr_3870 at 4608.819 kb on + strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.820 kb on - strand, within Psyr_3870 at 4608.862 kb on + strand, within Psyr_3870 at 4608.866 kb on - strand, within Psyr_3870 at 4608.866 kb on - strand, within Psyr_3870 at 4608.866 kb on - strand, within Psyr_3870 at 4609.019 kb on + strand at 4609.019 kb on + strand at 4609.019 kb on + strand at 4609.019 kb on + strand at 4609.019 kb on + strand at 4609.020 kb on - strand at 4609.020 kb on - strand at 4609.020 kb on - strand at 4609.020 kb on - strand at 4609.020 kb on - strand at 4609.020 kb on - strand at 4609.020 kb on - strand at 4609.092 kb on + strand at 4609.093 kb on - strand at 4609.093 kb on - strand at 4609.139 kb on - strand at 4609.150 kb on + strand at 4609.150 kb on + strand at 4609.151 kb on - strand at 4609.151 kb on - strand at 4609.151 kb on - strand at 4609.151 kb on - strand at 4609.151 kb on - strand at 4609.204 kb on + strand at 4609.372 kb on + strand at 4609.373 kb on - strand at 4609.386 kb on + strand at 4609.387 kb on - strand at 4609.414 kb on - strand at 4609.414 kb on - strand at 4609.414 kb on - strand at 4609.560 kb on + strand, within Psyr_3871 at 4609.561 kb on - strand, within Psyr_3871 at 4609.561 kb on - strand, within Psyr_3871 at 4609.602 kb on + strand, within Psyr_3871 at 4609.603 kb on - strand, within Psyr_3871 at 4609.603 kb on - strand, within Psyr_3871 at 4609.603 kb on - strand, within Psyr_3871 at 4609.624 kb on - strand, within Psyr_3871 at 4609.643 kb on + strand, within Psyr_3871 at 4609.674 kb on + strand, within Psyr_3871 at 4609.674 kb on + strand, within Psyr_3871 at 4609.675 kb on - strand, within Psyr_3871 at 4609.686 kb on + strand, within Psyr_3871 at 4609.824 kb on + strand, within Psyr_3871 at 4609.840 kb on + strand, within Psyr_3871 at 4609.840 kb on + strand, within Psyr_3871 at 4609.840 kb on + strand, within Psyr_3871 at 4609.841 kb on - strand, within Psyr_3871 at 4609.841 kb on - strand, within Psyr_3871 at 4609.841 kb on - strand, within Psyr_3871 at 4610.085 kb on + strand, within Psyr_3871 at 4610.086 kb on - strand, within Psyr_3871 at 4610.086 kb on - strand, within Psyr_3871 at 4610.232 kb on + strand, within Psyr_3871 at 4610.232 kb on + strand, within Psyr_3871 at 4610.232 kb on + strand, within Psyr_3871 at 4610.232 kb on + strand, within Psyr_3871 at 4610.233 kb on - strand, within Psyr_3871 at 4610.233 kb on - strand, within Psyr_3871 at 4610.233 kb on - strand, within Psyr_3871 at 4610.233 kb on - strand, within Psyr_3871 at 4610.233 kb on - strand, within Psyr_3871 at 4610.233 kb on - strand, within Psyr_3871 at 4610.319 kb on + strand, within Psyr_3871 at 4610.320 kb on - strand, within Psyr_3871 at 4610.453 kb on + strand, within Psyr_3871 at 4610.453 kb on + strand, within Psyr_3871 at 4610.454 kb on - strand, within Psyr_3871 at 4610.454 kb on - strand, within Psyr_3871 at 4610.614 kb on - strand, within Psyr_3871 at 4610.614 kb on - strand, within Psyr_3871 at 4610.614 kb on - strand, within Psyr_3871 at 4610.653 kb on - strand, within Psyr_3871 at 4610.715 kb on + strand, within Psyr_3871 at 4610.823 kb on + strand, within Psyr_3871 at 4610.823 kb on + strand, within Psyr_3871 at 4610.824 kb on - strand, within Psyr_3871 at 4610.824 kb on - strand, within Psyr_3871 at 4610.824 kb on - strand, within Psyr_3871 at 4610.987 kb on + strand, within Psyr_3871 at 4610.987 kb on + strand, within Psyr_3871 at 4611.009 kb on + strand, within Psyr_3871 at 4611.009 kb on + strand, within Psyr_3871 at 4611.010 kb on - strand, within Psyr_3871 at 4611.010 kb on - strand, within Psyr_3871 at 4611.460 kb on + strand at 4611.531 kb on + strand at 4611.534 kb on + strand at 4611.600 kb on + strand at 4611.600 kb on + strand at 4611.601 kb on - strand at 4611.648 kb on + strand at 4611.648 kb on + strand at 4611.649 kb on - strand at 4611.649 kb on - strand at 4611.701 kb on + strand at 4611.701 kb on + strand at 4611.701 kb on + strand at 4611.701 kb on + strand at 4611.702 kb on - strand at 4611.702 kb on - strand at 4611.702 kb on - strand at 4611.702 kb on - strand at 4611.707 kb on + strand at 4611.707 kb on + strand at 4611.707 kb on + strand at 4611.708 kb on - strand at 4611.830 kb on + strand at 4611.830 kb on + strand at 4611.830 kb on + strand at 4611.831 kb on - strand at 4611.879 kb on - strand at 4612.059 kb on + strand at 4612.290 kb on + strand at 4612.290 kb on + strand at 4612.290 kb on + strand at 4612.290 kb on + strand at 4612.291 kb on - strand at 4612.291 kb on - strand at 4612.291 kb on - strand at 4612.291 kb on - strand at 4612.291 kb on - strand at 4612.291 kb on - strand at 4612.294 kb on + strand at 4612.295 kb on - strand at 4612.295 kb on - strand at 4612.295 kb on - strand at 4612.295 kb on - strand at 4612.355 kb on - strand at 4612.355 kb on - strand at 4612.355 kb on - strand at 4612.375 kb on + strand at 4612.375 kb on + strand at 4612.375 kb on + strand at 4612.376 kb on - strand at 4612.456 kb on + strand, within Psyr_3872 at 4612.456 kb on + strand, within Psyr_3872 at 4612.457 kb on - strand, within Psyr_3872 at 4612.457 kb on - strand, within Psyr_3872 at 4612.457 kb on - strand, within Psyr_3872 at 4612.457 kb on - strand, within Psyr_3872 at 4612.457 kb on - strand, within Psyr_3872 at 4612.532 kb on - strand, within Psyr_3872 at 4612.589 kb on + strand, within Psyr_3872 at 4612.589 kb on + strand, within Psyr_3872 at 4612.589 kb on + strand, within Psyr_3872 at 4612.589 kb on + strand, within Psyr_3872 at 4612.589 kb on + strand, within Psyr_3872 at 4612.589 kb on + strand, within Psyr_3872 at 4612.590 kb on - strand, within Psyr_3872 at 4612.590 kb on - strand, within Psyr_3872 at 4612.590 kb on - strand, within Psyr_3872 at 4612.590 kb on - strand, within Psyr_3872 at 4612.590 kb on - strand, within Psyr_3872 at 4612.590 kb on - strand, within Psyr_3872 at 4612.590 kb on - strand, within Psyr_3872 at 4612.590 kb on - strand, within Psyr_3872 at 4612.590 kb on - strand, within Psyr_3872 at 4612.619 kb on - strand, within Psyr_3872
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine 10 mM remove 4,608,567 - +0.5 4,608,567 - -1.1 4,608,638 + +1.2 4,608,725 - -2.5 4,608,819 + Psyr_3870 0.38 +1.2 4,608,819 + Psyr_3870 0.38 +0.5 4,608,819 + Psyr_3870 0.38 +1.3 4,608,819 + Psyr_3870 0.38 -0.0 4,608,819 + Psyr_3870 0.38 -0.1 4,608,819 + Psyr_3870 0.38 +2.8 4,608,819 + Psyr_3870 0.38 +0.7 4,608,819 + Psyr_3870 0.38 -0.4 4,608,820 - Psyr_3870 0.38 -1.5 4,608,820 - Psyr_3870 0.38 +1.2 4,608,820 - Psyr_3870 0.38 +0.7 4,608,820 - Psyr_3870 0.38 +2.1 4,608,820 - Psyr_3870 0.38 +1.0 4,608,820 - Psyr_3870 0.38 -0.8 4,608,820 - Psyr_3870 0.38 +1.2 4,608,820 - Psyr_3870 0.38 -0.8 4,608,862 + Psyr_3870 0.59 +0.3 4,608,866 - Psyr_3870 0.61 +1.4 4,608,866 - Psyr_3870 0.61 -2.1 4,608,866 - Psyr_3870 0.61 +0.6 4,609,019 + +1.0 4,609,019 + +0.0 4,609,019 + +0.6 4,609,019 + -2.9 4,609,019 + -2.4 4,609,020 - +1.1 4,609,020 - -0.5 4,609,020 - -0.2 4,609,020 - -0.2 4,609,020 - +0.3 4,609,020 - +1.1 4,609,020 - +0.6 4,609,092 + +0.8 4,609,093 - +0.2 4,609,093 - -0.0 4,609,139 - +0.5 4,609,150 + +4.7 4,609,150 + +0.9 4,609,151 - -1.3 4,609,151 - -0.7 4,609,151 - +3.5 4,609,151 - -1.0 4,609,151 - -2.8 4,609,204 + -1.0 4,609,372 + -0.8 4,609,373 - +0.3 4,609,386 + +0.7 4,609,387 - -1.6 4,609,414 - +1.8 4,609,414 - +2.2 4,609,414 - -1.2 4,609,560 + Psyr_3871 0.16 -1.0 4,609,561 - Psyr_3871 0.16 +0.6 4,609,561 - Psyr_3871 0.16 -0.0 4,609,602 + Psyr_3871 0.17 -0.3 4,609,603 - Psyr_3871 0.17 +2.1 4,609,603 - Psyr_3871 0.17 -1.8 4,609,603 - Psyr_3871 0.17 -1.2 4,609,624 - Psyr_3871 0.18 +0.2 4,609,643 + Psyr_3871 0.19 +0.3 4,609,674 + Psyr_3871 0.20 +1.4 4,609,674 + Psyr_3871 0.20 +0.5 4,609,675 - Psyr_3871 0.20 -1.4 4,609,686 + Psyr_3871 0.21 -0.8 4,609,824 + Psyr_3871 0.26 -0.4 4,609,840 + Psyr_3871 0.27 +0.8 4,609,840 + Psyr_3871 0.27 +1.2 4,609,840 + Psyr_3871 0.27 -1.2 4,609,841 - Psyr_3871 0.27 -0.6 4,609,841 - Psyr_3871 0.27 -0.5 4,609,841 - Psyr_3871 0.27 -0.4 4,610,085 + Psyr_3871 0.37 -0.8 4,610,086 - Psyr_3871 0.37 -0.3 4,610,086 - Psyr_3871 0.37 -0.1 4,610,232 + Psyr_3871 0.43 +2.8 4,610,232 + Psyr_3871 0.43 +0.4 4,610,232 + Psyr_3871 0.43 +1.8 4,610,232 + Psyr_3871 0.43 -0.7 4,610,233 - Psyr_3871 0.43 +1.7 4,610,233 - Psyr_3871 0.43 -0.4 4,610,233 - Psyr_3871 0.43 -1.1 4,610,233 - Psyr_3871 0.43 +0.6 4,610,233 - Psyr_3871 0.43 +0.7 4,610,233 - Psyr_3871 0.43 +1.7 4,610,319 + Psyr_3871 0.46 -3.0 4,610,320 - Psyr_3871 0.46 -0.7 4,610,453 + Psyr_3871 0.52 -1.1 4,610,453 + Psyr_3871 0.52 -0.1 4,610,454 - Psyr_3871 0.52 -2.4 4,610,454 - Psyr_3871 0.52 +0.1 4,610,614 - Psyr_3871 0.58 -0.1 4,610,614 - Psyr_3871 0.58 -0.2 4,610,614 - Psyr_3871 0.58 -1.0 4,610,653 - Psyr_3871 0.60 +1.2 4,610,715 + Psyr_3871 0.62 -2.7 4,610,823 + Psyr_3871 0.67 -1.2 4,610,823 + Psyr_3871 0.67 -0.0 4,610,824 - Psyr_3871 0.67 +0.1 4,610,824 - Psyr_3871 0.67 +0.1 4,610,824 - Psyr_3871 0.67 -1.8 4,610,987 + Psyr_3871 0.73 +1.2 4,610,987 + Psyr_3871 0.73 -3.5 4,611,009 + Psyr_3871 0.74 -1.1 4,611,009 + Psyr_3871 0.74 +1.3 4,611,010 - Psyr_3871 0.74 +0.7 4,611,010 - Psyr_3871 0.74 -1.8 4,611,460 + -0.6 4,611,531 + -0.9 4,611,534 + +0.1 4,611,600 + -0.6 4,611,600 + +1.0 4,611,601 - +0.1 4,611,648 + -1.1 4,611,648 + -0.3 4,611,649 - -1.8 4,611,649 - -0.1 4,611,701 + +0.4 4,611,701 + +0.2 4,611,701 + -1.4 4,611,701 + -0.4 4,611,702 - +1.4 4,611,702 - -0.0 4,611,702 - -0.5 4,611,702 - +0.1 4,611,707 + +3.2 4,611,707 + -1.1 4,611,707 + -0.4 4,611,708 - +0.2 4,611,830 + -0.0 4,611,830 + -0.9 4,611,830 + -0.9 4,611,831 - -0.1 4,611,879 - -0.1 4,612,059 + +2.8 4,612,290 + -0.4 4,612,290 + -0.0 4,612,290 + +0.9 4,612,290 + -1.1 4,612,291 - +0.8 4,612,291 - +2.9 4,612,291 - +0.3 4,612,291 - +0.1 4,612,291 - -0.0 4,612,291 - +0.9 4,612,294 + +1.5 4,612,295 - +0.1 4,612,295 - -0.8 4,612,295 - -1.4 4,612,295 - -1.1 4,612,355 - +0.7 4,612,355 - +1.2 4,612,355 - -1.8 4,612,375 + -0.7 4,612,375 + -0.4 4,612,375 + +0.2 4,612,376 - +0.4 4,612,456 + Psyr_3872 0.13 +0.5 4,612,456 + Psyr_3872 0.13 +1.1 4,612,457 - Psyr_3872 0.13 +1.4 4,612,457 - Psyr_3872 0.13 +0.3 4,612,457 - Psyr_3872 0.13 +1.2 4,612,457 - Psyr_3872 0.13 +1.1 4,612,457 - Psyr_3872 0.13 -1.2 4,612,532 - Psyr_3872 0.20 +1.2 4,612,589 + Psyr_3872 0.26 -1.9 4,612,589 + Psyr_3872 0.26 -2.4 4,612,589 + Psyr_3872 0.26 +1.8 4,612,589 + Psyr_3872 0.26 +1.4 4,612,589 + Psyr_3872 0.26 -0.6 4,612,589 + Psyr_3872 0.26 +0.2 4,612,590 - Psyr_3872 0.26 +0.2 4,612,590 - Psyr_3872 0.26 -1.8 4,612,590 - Psyr_3872 0.26 -1.6 4,612,590 - Psyr_3872 0.26 +1.5 4,612,590 - Psyr_3872 0.26 -0.3 4,612,590 - Psyr_3872 0.26 -1.1 4,612,590 - Psyr_3872 0.26 -0.3 4,612,590 - Psyr_3872 0.26 +0.1 4,612,590 - Psyr_3872 0.26 -1.1 4,612,619 - Psyr_3872 0.28 -3.0
Or see this region's nucleotide sequence