Experiment: KB with Palmatine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3527 and Psyr_3528 are separated by 75 nucleotides Psyr_3528 and Psyr_3529 are separated by 263 nucleotides
Psyr_3527: Psyr_3527 - glutathione-independent formaldehyde dehydrogenase, at 4,203,866 to 4,205,101
_3527
Psyr_3528: Psyr_3528 - hypothetical protein, at 4,205,177 to 4,205,419
_3528
Psyr_3529: Psyr_3529 - Asp/Glu racemase, at 4,205,683 to 4,206,414
_3529
Position (kb) 4205
4206 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4204.262 kb on + strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.292 kb on + strand, within Psyr_3527 at 4204.293 kb on - strand, within Psyr_3527 at 4204.293 kb on - strand, within Psyr_3527 at 4204.402 kb on - strand, within Psyr_3527 at 4204.442 kb on + strand, within Psyr_3527 at 4204.443 kb on - strand, within Psyr_3527 at 4204.443 kb on - strand, within Psyr_3527 at 4204.648 kb on - strand, within Psyr_3527 at 4204.792 kb on - strand, within Psyr_3527 at 4204.792 kb on - strand, within Psyr_3527 at 4204.792 kb on - strand, within Psyr_3527 at 4204.792 kb on - strand, within Psyr_3527 at 4204.792 kb on - strand, within Psyr_3527 at 4204.793 kb on + strand, within Psyr_3527 at 4204.793 kb on + strand, within Psyr_3527 at 4204.794 kb on - strand, within Psyr_3527 at 4204.794 kb on - strand, within Psyr_3527 at 4204.794 kb on - strand, within Psyr_3527 at 4204.976 kb on + strand, within Psyr_3527 at 4204.977 kb on - strand, within Psyr_3527 at 4205.095 kb on + strand at 4205.096 kb on - strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.099 kb on + strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.100 kb on - strand at 4205.104 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.176 kb on + strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.177 kb on - strand at 4205.266 kb on - strand, within Psyr_3528 at 4205.266 kb on - strand, within Psyr_3528 at 4205.266 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.352 kb on - strand, within Psyr_3528 at 4205.438 kb on + strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.439 kb on - strand at 4205.440 kb on + strand at 4205.440 kb on + strand at 4205.440 kb on + strand at 4205.440 kb on + strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.441 kb on - strand at 4205.456 kb on - strand at 4205.486 kb on - strand at 4205.519 kb on - strand at 4205.519 kb on - strand at 4205.540 kb on + strand at 4205.577 kb on + strand at 4205.578 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.617 kb on - strand at 4205.697 kb on - strand at 4206.007 kb on + strand, within Psyr_3529 at 4206.007 kb on + strand, within Psyr_3529 at 4206.007 kb on + strand, within Psyr_3529 at 4206.008 kb on - strand, within Psyr_3529 at 4206.008 kb on - strand, within Psyr_3529 at 4206.008 kb on - strand, within Psyr_3529 at 4206.008 kb on - strand, within Psyr_3529 at 4206.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine 10 mM remove 4,204,262 + Psyr_3527 0.32 +0.1 4,204,292 + Psyr_3527 0.34 +2.1 4,204,292 + Psyr_3527 0.34 +0.8 4,204,292 + Psyr_3527 0.34 +0.4 4,204,293 - Psyr_3527 0.35 -1.7 4,204,293 - Psyr_3527 0.35 +1.7 4,204,402 - Psyr_3527 0.43 +0.2 4,204,442 + Psyr_3527 0.47 -0.4 4,204,443 - Psyr_3527 0.47 -1.0 4,204,443 - Psyr_3527 0.47 +0.4 4,204,648 - Psyr_3527 0.63 +1.6 4,204,792 - Psyr_3527 0.75 +2.7 4,204,792 - Psyr_3527 0.75 +0.5 4,204,792 - Psyr_3527 0.75 +1.8 4,204,792 - Psyr_3527 0.75 -0.0 4,204,792 - Psyr_3527 0.75 -1.0 4,204,793 + Psyr_3527 0.75 -2.1 4,204,793 + Psyr_3527 0.75 +1.4 4,204,794 - Psyr_3527 0.75 -0.7 4,204,794 - Psyr_3527 0.75 -0.4 4,204,794 - Psyr_3527 0.75 +1.2 4,204,976 + Psyr_3527 0.90 +1.4 4,204,977 - Psyr_3527 0.90 -0.7 4,205,095 + +0.5 4,205,096 - +0.8 4,205,099 + -0.0 4,205,099 + -0.4 4,205,099 + +0.7 4,205,099 + -1.4 4,205,099 + -1.1 4,205,099 + -0.6 4,205,099 + -1.2 4,205,099 + +0.2 4,205,099 + -0.4 4,205,099 + -1.7 4,205,099 + -2.1 4,205,099 + +0.2 4,205,099 + +1.2 4,205,099 + -1.6 4,205,099 + -1.0 4,205,099 + +1.9 4,205,100 - -0.6 4,205,100 - +1.1 4,205,100 - +0.2 4,205,100 - -0.3 4,205,100 - +0.6 4,205,100 - +1.5 4,205,100 - -0.6 4,205,100 - +0.5 4,205,100 - -1.1 4,205,100 - -0.5 4,205,100 - -2.5 4,205,100 - +1.6 4,205,100 - -0.6 4,205,100 - -3.0 4,205,100 - -2.1 4,205,104 + -0.8 4,205,176 + +0.5 4,205,176 + -0.7 4,205,176 + +2.0 4,205,176 + -1.9 4,205,176 + -0.9 4,205,176 + -1.5 4,205,176 + -0.2 4,205,176 + -1.2 4,205,176 + -0.4 4,205,177 - +0.2 4,205,177 - +0.8 4,205,177 - +2.2 4,205,177 - -1.1 4,205,177 - +0.3 4,205,177 - +1.2 4,205,177 - +1.3 4,205,177 - +0.9 4,205,177 - +0.5 4,205,177 - -3.7 4,205,177 - +4.2 4,205,177 - -0.7 4,205,177 - -0.6 4,205,177 - +4.0 4,205,177 - +2.4 4,205,177 - -2.0 4,205,177 - +0.2 4,205,177 - +0.1 4,205,177 - -0.7 4,205,177 - +4.2 4,205,177 - +1.2 4,205,177 - -0.1 4,205,266 - Psyr_3528 0.37 -1.3 4,205,266 - Psyr_3528 0.37 +0.5 4,205,266 - Psyr_3528 0.37 -1.6 4,205,352 - Psyr_3528 0.72 -0.9 4,205,352 - Psyr_3528 0.72 -0.8 4,205,352 - Psyr_3528 0.72 -1.0 4,205,352 - Psyr_3528 0.72 -0.0 4,205,352 - Psyr_3528 0.72 -0.0 4,205,352 - Psyr_3528 0.72 +1.8 4,205,352 - Psyr_3528 0.72 +0.2 4,205,352 - Psyr_3528 0.72 -1.5 4,205,352 - Psyr_3528 0.72 +0.2 4,205,352 - Psyr_3528 0.72 +0.8 4,205,352 - Psyr_3528 0.72 +0.3 4,205,352 - Psyr_3528 0.72 -1.8 4,205,352 - Psyr_3528 0.72 +2.2 4,205,352 - Psyr_3528 0.72 +1.9 4,205,352 - Psyr_3528 0.72 +0.2 4,205,352 - Psyr_3528 0.72 +0.5 4,205,352 - Psyr_3528 0.72 +0.8 4,205,352 - Psyr_3528 0.72 -0.4 4,205,352 - Psyr_3528 0.72 -1.4 4,205,352 - Psyr_3528 0.72 +0.8 4,205,352 - Psyr_3528 0.72 -0.7 4,205,352 - Psyr_3528 0.72 -1.5 4,205,438 + +0.2 4,205,439 - +0.6 4,205,439 - -0.8 4,205,439 - +0.1 4,205,440 + -0.8 4,205,440 + +2.0 4,205,440 + -0.1 4,205,440 + -1.6 4,205,441 - +1.4 4,205,441 - +1.2 4,205,441 - -1.9 4,205,441 - +0.7 4,205,441 - +0.2 4,205,441 - +1.6 4,205,441 - -2.0 4,205,441 - -0.5 4,205,441 - -0.1 4,205,441 - -1.1 4,205,441 - -1.5 4,205,441 - +1.8 4,205,441 - -1.3 4,205,441 - -0.9 4,205,441 - -1.4 4,205,441 - -0.1 4,205,441 - +1.2 4,205,441 - +1.8 4,205,441 - -0.6 4,205,441 - -1.0 4,205,441 - -0.2 4,205,441 - +0.0 4,205,441 - +0.2 4,205,441 - -0.3 4,205,441 - -2.0 4,205,441 - -0.3 4,205,441 - +1.1 4,205,441 - +0.9 4,205,456 - -0.9 4,205,486 - -1.4 4,205,519 - +1.1 4,205,519 - -1.2 4,205,540 + -0.8 4,205,577 + -0.3 4,205,578 - -0.6 4,205,617 - +0.7 4,205,617 - -1.3 4,205,617 - -0.2 4,205,617 - -3.3 4,205,617 - +0.9 4,205,617 - +1.8 4,205,617 - -0.6 4,205,617 - -0.4 4,205,617 - +1.9 4,205,617 - +1.5 4,205,617 - +0.7 4,205,617 - -0.1 4,205,617 - +0.5 4,205,617 - +3.5 4,205,617 - -1.4 4,205,617 - -1.1 4,205,617 - +0.9 4,205,617 - +1.4 4,205,617 - -0.1 4,205,617 - +0.3 4,205,617 - -0.2 4,205,617 - +0.6 4,205,617 - -1.0 4,205,617 - +0.1 4,205,697 - +0.7 4,206,007 + Psyr_3529 0.44 +0.3 4,206,007 + Psyr_3529 0.44 -0.5 4,206,007 + Psyr_3529 0.44 -0.5 4,206,008 - Psyr_3529 0.44 -0.1 4,206,008 - Psyr_3529 0.44 -0.7 4,206,008 - Psyr_3529 0.44 +0.2 4,206,008 - Psyr_3529 0.44 -0.7 4,206,409 - -1.5
Or see this region's nucleotide sequence