Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2754

Experiment: KB with Palmatine 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2753 and Psyr_2754 are separated by 49 nucleotidesPsyr_2754 and Psyr_2755 are separated by 135 nucleotides Psyr_2753: Psyr_2753 - Zinc-containing alcohol dehydrogenase superfamily, at 3,341,164 to 3,342,147 _2753 Psyr_2754: Psyr_2754 - regulatory protein, TetR, at 3,342,197 to 3,342,856 _2754 Psyr_2755: Psyr_2755 - 2-nitropropane dioxygenase, NPD, at 3,342,992 to 3,344,071 _2755 Position (kb) 3342 3343Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3341.475 kb on + strand, within Psyr_2753at 3341.475 kb on + strand, within Psyr_2753at 3341.475 kb on + strand, within Psyr_2753at 3341.476 kb on - strand, within Psyr_2753at 3341.476 kb on - strand, within Psyr_2753at 3341.476 kb on - strand, within Psyr_2753at 3341.476 kb on - strand, within Psyr_2753at 3341.476 kb on - strand, within Psyr_2753at 3341.476 kb on - strand, within Psyr_2753at 3341.476 kb on - strand, within Psyr_2753at 3342.023 kb on + strand, within Psyr_2753at 3342.023 kb on + strand, within Psyr_2753at 3342.024 kb on - strand, within Psyr_2753at 3342.024 kb on - strand, within Psyr_2753at 3342.147 kb on + strandat 3342.147 kb on + strandat 3342.148 kb on - strandat 3342.148 kb on - strandat 3342.248 kb on - strandat 3342.256 kb on + strandat 3342.484 kb on - strand, within Psyr_2754at 3342.600 kb on + strand, within Psyr_2754at 3342.645 kb on + strand, within Psyr_2754at 3342.645 kb on + strand, within Psyr_2754at 3342.645 kb on + strand, within Psyr_2754at 3342.645 kb on + strand, within Psyr_2754at 3342.646 kb on - strand, within Psyr_2754at 3342.646 kb on - strand, within Psyr_2754at 3342.646 kb on - strand, within Psyr_2754at 3342.652 kb on - strand, within Psyr_2754at 3342.652 kb on - strand, within Psyr_2754at 3342.690 kb on + strand, within Psyr_2754at 3342.690 kb on + strand, within Psyr_2754at 3342.691 kb on - strand, within Psyr_2754at 3342.691 kb on - strand, within Psyr_2754at 3342.691 kb on - strand, within Psyr_2754at 3342.691 kb on - strand, within Psyr_2754at 3342.691 kb on - strand, within Psyr_2754at 3343.167 kb on + strand, within Psyr_2755at 3343.283 kb on + strand, within Psyr_2755at 3343.284 kb on - strand, within Psyr_2755at 3343.284 kb on - strand, within Psyr_2755at 3343.286 kb on + strand, within Psyr_2755at 3343.287 kb on - strand, within Psyr_2755at 3343.287 kb on - strand, within Psyr_2755at 3343.287 kb on - strand, within Psyr_2755at 3343.691 kb on - strand, within Psyr_2755

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Palmatine 10 mM
remove
3,341,475 + Psyr_2753 0.32 +0.9
3,341,475 + Psyr_2753 0.32 -0.2
3,341,475 + Psyr_2753 0.32 -1.1
3,341,476 - Psyr_2753 0.32 +0.6
3,341,476 - Psyr_2753 0.32 +0.1
3,341,476 - Psyr_2753 0.32 +1.9
3,341,476 - Psyr_2753 0.32 +1.0
3,341,476 - Psyr_2753 0.32 +0.1
3,341,476 - Psyr_2753 0.32 +0.5
3,341,476 - Psyr_2753 0.32 -0.4
3,342,023 + Psyr_2753 0.87 +2.1
3,342,023 + Psyr_2753 0.87 -0.1
3,342,024 - Psyr_2753 0.87 -0.1
3,342,024 - Psyr_2753 0.87 +1.5
3,342,147 + -1.6
3,342,147 + -0.5
3,342,148 - -0.7
3,342,148 - -0.3
3,342,248 - -1.1
3,342,256 + +0.5
3,342,484 - Psyr_2754 0.43 -0.6
3,342,600 + Psyr_2754 0.61 -2.8
3,342,645 + Psyr_2754 0.68 -0.1
3,342,645 + Psyr_2754 0.68 -1.6
3,342,645 + Psyr_2754 0.68 +0.7
3,342,645 + Psyr_2754 0.68 -3.2
3,342,646 - Psyr_2754 0.68 -0.1
3,342,646 - Psyr_2754 0.68 +0.5
3,342,646 - Psyr_2754 0.68 +0.8
3,342,652 - Psyr_2754 0.69 +1.0
3,342,652 - Psyr_2754 0.69 +0.5
3,342,690 + Psyr_2754 0.75 +1.7
3,342,690 + Psyr_2754 0.75 +0.2
3,342,691 - Psyr_2754 0.75 +1.5
3,342,691 - Psyr_2754 0.75 +0.5
3,342,691 - Psyr_2754 0.75 +0.1
3,342,691 - Psyr_2754 0.75 +2.1
3,342,691 - Psyr_2754 0.75 -0.4
3,343,167 + Psyr_2755 0.16 +1.8
3,343,283 + Psyr_2755 0.27 +0.4
3,343,284 - Psyr_2755 0.27 -0.0
3,343,284 - Psyr_2755 0.27 -0.2
3,343,286 + Psyr_2755 0.27 -0.5
3,343,287 - Psyr_2755 0.27 -1.2
3,343,287 - Psyr_2755 0.27 +0.4
3,343,287 - Psyr_2755 0.27 +1.3
3,343,691 - Psyr_2755 0.65 -0.1

Or see this region's nucleotide sequence