Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1247

Experiment: KB with Palmatine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1245 and Psyr_1246 are separated by 26 nucleotidesPsyr_1246 and Psyr_1247 overlap by 1 nucleotidesPsyr_1247 and Psyr_1248 are separated by 3 nucleotides Psyr_1245: Psyr_1245 - 23S rRNA m(2)A-2503 methyltransferase, at 1,400,404 to 1,401,552 _1245 Psyr_1246: Psyr_1246 - TPR repeat protein:TPR repeat protein, at 1,401,579 to 1,402,337 _1246 Psyr_1247: Psyr_1247 - conserved hypothetical protein, at 1,402,337 to 1,403,341 _1247 Psyr_1248: Psyr_1248 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 1,403,345 to 1,404,454 _1248 Position (kb) 1402 1403 1404Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1401.390 kb on + strand, within Psyr_1245at 1401.487 kb on + strandat 1401.487 kb on + strandat 1401.487 kb on + strandat 1401.487 kb on + strandat 1401.487 kb on + strandat 1401.487 kb on + strandat 1401.487 kb on + strandat 1401.487 kb on + strandat 1401.487 kb on + strandat 1401.488 kb on - strandat 1401.489 kb on + strandat 1401.489 kb on + strandat 1401.489 kb on + strandat 1401.490 kb on - strandat 1401.491 kb on + strandat 1401.491 kb on + strandat 1401.491 kb on + strandat 1401.491 kb on + strandat 1401.491 kb on + strandat 1401.491 kb on + strandat 1401.492 kb on - strandat 1401.492 kb on - strandat 1401.696 kb on + strand, within Psyr_1246at 1401.696 kb on + strand, within Psyr_1246at 1401.696 kb on + strand, within Psyr_1246at 1401.909 kb on + strand, within Psyr_1246at 1401.939 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.149 kb on + strand, within Psyr_1246at 1402.167 kb on + strand, within Psyr_1246at 1402.170 kb on + strand, within Psyr_1246at 1402.208 kb on + strand, within Psyr_1246at 1402.208 kb on + strand, within Psyr_1246at 1402.208 kb on + strand, within Psyr_1246at 1402.213 kb on + strand, within Psyr_1246at 1402.240 kb on + strand, within Psyr_1246at 1402.240 kb on + strand, within Psyr_1246at 1402.240 kb on + strand, within Psyr_1246at 1402.240 kb on + strand, within Psyr_1246at 1402.240 kb on + strand, within Psyr_1246at 1402.240 kb on + strand, within Psyr_1246at 1402.240 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.242 kb on + strand, within Psyr_1246at 1402.311 kb on + strandat 1402.320 kb on + strandat 1402.320 kb on + strandat 1402.320 kb on + strandat 1402.320 kb on + strandat 1402.320 kb on + strandat 1402.513 kb on + strand, within Psyr_1247at 1402.513 kb on + strand, within Psyr_1247at 1402.529 kb on + strand, within Psyr_1247at 1402.529 kb on + strand, within Psyr_1247at 1402.857 kb on + strand, within Psyr_1247at 1403.118 kb on + strand, within Psyr_1247at 1403.270 kb on + strandat 1403.270 kb on + strandat 1403.292 kb on + strandat 1403.292 kb on + strandat 1403.292 kb on + strandat 1403.292 kb on + strandat 1403.292 kb on + strandat 1403.292 kb on + strandat 1403.292 kb on + strandat 1403.331 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Palmatine 10 mM
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1,401,390 + Psyr_1245 0.86 +1.2
1,401,487 + +1.9
1,401,487 + -1.4
1,401,487 + +0.7
1,401,487 + +1.2
1,401,487 + -2.1
1,401,487 + -0.5
1,401,487 + -2.7
1,401,487 + -2.3
1,401,487 + +0.7
1,401,488 - +0.8
1,401,489 + -0.7
1,401,489 + +0.0
1,401,489 + +1.6
1,401,490 - -0.9
1,401,491 + +1.4
1,401,491 + +2.0
1,401,491 + +0.1
1,401,491 + +0.4
1,401,491 + -0.7
1,401,491 + +1.8
1,401,492 - +1.3
1,401,492 - +1.1
1,401,696 + Psyr_1246 0.15 -0.0
1,401,696 + Psyr_1246 0.15 +1.3
1,401,696 + Psyr_1246 0.15 -0.7
1,401,909 + Psyr_1246 0.43 +0.3
1,401,939 + Psyr_1246 0.47 +0.6
1,402,149 + Psyr_1246 0.75 +0.6
1,402,149 + Psyr_1246 0.75 -0.2
1,402,149 + Psyr_1246 0.75 +3.3
1,402,149 + Psyr_1246 0.75 -3.1
1,402,149 + Psyr_1246 0.75 -0.8
1,402,149 + Psyr_1246 0.75 -1.1
1,402,149 + Psyr_1246 0.75 +1.5
1,402,167 + Psyr_1246 0.77 +0.8
1,402,170 + Psyr_1246 0.78 -2.8
1,402,208 + Psyr_1246 0.83 -0.7
1,402,208 + Psyr_1246 0.83 +2.3
1,402,208 + Psyr_1246 0.83 -1.2
1,402,213 + Psyr_1246 0.84 +0.3
1,402,240 + Psyr_1246 0.87 -0.3
1,402,240 + Psyr_1246 0.87 +1.1
1,402,240 + Psyr_1246 0.87 -0.8
1,402,240 + Psyr_1246 0.87 -0.3
1,402,240 + Psyr_1246 0.87 +0.6
1,402,240 + Psyr_1246 0.87 +0.1
1,402,240 + Psyr_1246 0.87 -0.5
1,402,242 + Psyr_1246 0.87 -1.0
1,402,242 + Psyr_1246 0.87 -0.2
1,402,242 + Psyr_1246 0.87 +1.0
1,402,242 + Psyr_1246 0.87 -1.9
1,402,242 + Psyr_1246 0.87 -0.2
1,402,242 + Psyr_1246 0.87 +0.9
1,402,242 + Psyr_1246 0.87 +0.7
1,402,242 + Psyr_1246 0.87 -0.1
1,402,242 + Psyr_1246 0.87 +0.2
1,402,242 + Psyr_1246 0.87 +1.5
1,402,242 + Psyr_1246 0.87 +0.7
1,402,242 + Psyr_1246 0.87 -0.9
1,402,242 + Psyr_1246 0.87 +1.2
1,402,242 + Psyr_1246 0.87 +0.0
1,402,242 + Psyr_1246 0.87 -0.2
1,402,242 + Psyr_1246 0.87 +1.2
1,402,242 + Psyr_1246 0.87 -0.3
1,402,311 + +0.2
1,402,320 + +0.5
1,402,320 + -0.8
1,402,320 + +1.5
1,402,320 + -0.5
1,402,320 + +2.9
1,402,513 + Psyr_1247 0.18 -1.3
1,402,513 + Psyr_1247 0.18 -1.8
1,402,529 + Psyr_1247 0.19 -2.7
1,402,529 + Psyr_1247 0.19 -1.5
1,402,857 + Psyr_1247 0.52 +0.4
1,403,118 + Psyr_1247 0.78 +1.4
1,403,270 + -1.1
1,403,270 + -1.7
1,403,292 + -1.5
1,403,292 + -0.8
1,403,292 + -0.3
1,403,292 + +2.4
1,403,292 + -1.2
1,403,292 + +0.1
1,403,292 + +1.5
1,403,331 + -0.6

Or see this region's nucleotide sequence