Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0988

Experiment: KB with Palmatine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0986 and Psyr_0987 are separated by 352 nucleotidesPsyr_0987 and Psyr_0988 are separated by 59 nucleotidesPsyr_0988 and Psyr_0989 are separated by 380 nucleotides Psyr_0986: Psyr_0986 - 16S rRNA m(2)G 1207 methyltransferase, at 1,116,474 to 1,117,472 _0986 Psyr_0987: Psyr_0987 - Helix-turn-helix, Fis-type, at 1,117,825 to 1,118,124 _0987 Psyr_0988: Psyr_0988 - Integrase, catalytic region, at 1,118,184 to 1,118,966 _0988 Psyr_0989: Psyr_0989 - Lysine exporter protein (LYSE/YGGA), at 1,119,347 to 1,119,979 _0989 Position (kb) 1118 1119Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1117.450 kb on - strandat 1117.450 kb on - strandat 1117.502 kb on - strandat 1117.567 kb on + strandat 1118.971 kb on + strandat 1118.971 kb on + strandat 1118.971 kb on + strandat 1118.971 kb on + strandat 1118.971 kb on + strandat 1118.971 kb on + strandat 1118.971 kb on + strandat 1118.971 kb on + strandat 1118.973 kb on + strandat 1118.973 kb on + strandat 1119.244 kb on + strandat 1119.244 kb on + strandat 1119.244 kb on + strandat 1119.245 kb on - strandat 1119.245 kb on - strandat 1119.248 kb on + strandat 1119.249 kb on - strandat 1119.249 kb on - strandat 1119.306 kb on + strandat 1119.350 kb on + strandat 1119.350 kb on + strandat 1119.350 kb on + strandat 1119.350 kb on + strandat 1119.350 kb on + strandat 1119.350 kb on + strandat 1119.350 kb on + strandat 1119.351 kb on - strandat 1119.351 kb on - strandat 1119.351 kb on - strandat 1119.351 kb on - strandat 1119.351 kb on - strandat 1119.351 kb on - strandat 1119.351 kb on - strandat 1119.351 kb on - strandat 1119.590 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.594 kb on + strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.595 kb on - strand, within Psyr_0989at 1119.599 kb on + strand, within Psyr_0989at 1119.599 kb on + strand, within Psyr_0989at 1119.599 kb on + strand, within Psyr_0989at 1119.600 kb on - strand, within Psyr_0989at 1119.600 kb on - strand, within Psyr_0989at 1119.695 kb on + strand, within Psyr_0989at 1119.695 kb on + strand, within Psyr_0989at 1119.695 kb on + strand, within Psyr_0989at 1119.695 kb on + strand, within Psyr_0989at 1119.696 kb on - strand, within Psyr_0989at 1119.696 kb on - strand, within Psyr_0989at 1119.696 kb on - strand, within Psyr_0989at 1119.696 kb on - strand, within Psyr_0989at 1119.815 kb on + strand, within Psyr_0989

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Palmatine 10 mM
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1,117,450 - +1.4
1,117,450 - -1.3
1,117,502 - +0.3
1,117,567 + +0.1
1,118,971 + -0.7
1,118,971 + -1.2
1,118,971 + +2.4
1,118,971 + -0.3
1,118,971 + +1.0
1,118,971 + +0.0
1,118,971 + +0.3
1,118,971 + +0.5
1,118,973 + -0.5
1,118,973 + +0.9
1,119,244 + +1.6
1,119,244 + -0.4
1,119,244 + +0.0
1,119,245 - -4.9
1,119,245 - +0.1
1,119,248 + +0.3
1,119,249 - -2.1
1,119,249 - +0.1
1,119,306 + +0.5
1,119,350 + +0.5
1,119,350 + -1.2
1,119,350 + -0.0
1,119,350 + -1.6
1,119,350 + +1.3
1,119,350 + -1.4
1,119,350 + -1.2
1,119,351 - -0.7
1,119,351 - +0.3
1,119,351 - +4.3
1,119,351 - +1.3
1,119,351 - -0.7
1,119,351 - +0.8
1,119,351 - +1.0
1,119,351 - +0.5
1,119,590 + Psyr_0989 0.38 -1.9
1,119,594 + Psyr_0989 0.39 +1.1
1,119,594 + Psyr_0989 0.39 +0.2
1,119,594 + Psyr_0989 0.39 +0.0
1,119,594 + Psyr_0989 0.39 +1.3
1,119,594 + Psyr_0989 0.39 -0.6
1,119,594 + Psyr_0989 0.39 -1.1
1,119,594 + Psyr_0989 0.39 -0.9
1,119,594 + Psyr_0989 0.39 +0.6
1,119,594 + Psyr_0989 0.39 +0.8
1,119,594 + Psyr_0989 0.39 +0.3
1,119,595 - Psyr_0989 0.39 -0.1
1,119,595 - Psyr_0989 0.39 -0.2
1,119,595 - Psyr_0989 0.39 -0.7
1,119,595 - Psyr_0989 0.39 +0.1
1,119,595 - Psyr_0989 0.39 +0.3
1,119,595 - Psyr_0989 0.39 +1.0
1,119,599 + Psyr_0989 0.40 +0.3
1,119,599 + Psyr_0989 0.40 +0.2
1,119,599 + Psyr_0989 0.40 -0.1
1,119,600 - Psyr_0989 0.40 +0.3
1,119,600 - Psyr_0989 0.40 -0.3
1,119,695 + Psyr_0989 0.55 -1.1
1,119,695 + Psyr_0989 0.55 -0.3
1,119,695 + Psyr_0989 0.55 +0.3
1,119,695 + Psyr_0989 0.55 +0.5
1,119,696 - Psyr_0989 0.55 +0.0
1,119,696 - Psyr_0989 0.55 +1.3
1,119,696 - Psyr_0989 0.55 -0.8
1,119,696 - Psyr_0989 0.55 -1.4
1,119,815 + Psyr_0989 0.74 -2.1

Or see this region's nucleotide sequence