Experiment: KB with Palmatine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0178 and Psyr_0179 are separated by 134 nucleotides Psyr_0179 and Psyr_0180 are separated by 2 nucleotides Psyr_0180 and Psyr_0181 are separated by 238 nucleotides Psyr_0181 and Psyr_0182 are separated by 9 nucleotides
Psyr_0178: Psyr_0178 - regulator of nucleoside diphosphate kinase, at 193,552 to 193,959
_0178
Psyr_0179: Psyr_0179 - Protein of unknown function DUF1289, at 194,094 to 194,330
_0179
Psyr_0180: Psyr_0180 - Frataxin-like protein, at 194,333 to 194,665
_0180
Psyr_0181: Psyr_0181 - lipoprotein LppL, at 194,904 to 195,050
_0181
Psyr_0182: Psyr_0182 - diaminopimelate decarboxylase, at 195,060 to 196,307
_0182
Position (kb) 194
195
196 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 193.918 kb on + strand, within Psyr_0178 at 193.918 kb on + strand, within Psyr_0178 at 193.918 kb on + strand, within Psyr_0178 at 193.918 kb on + strand, within Psyr_0178 at 193.919 kb on - strand at 193.919 kb on - strand at 193.919 kb on - strand at 193.979 kb on - strand at 193.979 kb on - strand at 193.991 kb on + strand at 193.991 kb on + strand at 193.991 kb on + strand at 193.992 kb on - strand at 194.071 kb on + strand at 194.071 kb on + strand at 194.072 kb on - strand at 194.075 kb on + strand at 194.075 kb on + strand at 194.075 kb on + strand at 194.075 kb on + strand at 194.075 kb on + strand at 194.075 kb on + strand at 194.075 kb on + strand at 194.076 kb on - strand at 194.076 kb on - strand at 194.076 kb on - strand at 194.076 kb on - strand at 194.076 kb on - strand at 194.258 kb on + strand, within Psyr_0179 at 194.258 kb on + strand, within Psyr_0179 at 194.449 kb on - strand, within Psyr_0180 at 194.518 kb on + strand, within Psyr_0180 at 194.518 kb on + strand, within Psyr_0180 at 194.519 kb on - strand, within Psyr_0180 at 194.519 kb on - strand, within Psyr_0180 at 194.553 kb on - strand, within Psyr_0180 at 194.553 kb on - strand, within Psyr_0180 at 194.600 kb on + strand, within Psyr_0180 at 194.600 kb on + strand, within Psyr_0180 at 194.601 kb on - strand, within Psyr_0180 at 194.601 kb on - strand, within Psyr_0180 at 194.680 kb on + strand at 194.680 kb on + strand at 194.681 kb on - strand at 194.694 kb on + strand at 194.694 kb on + strand at 194.695 kb on - strand at 194.695 kb on - strand at 194.713 kb on - strand at 194.713 kb on - strand at 194.741 kb on + strand at 194.742 kb on - strand at 194.742 kb on - strand at 194.742 kb on - strand at 194.742 kb on - strand at 194.770 kb on + strand at 194.786 kb on + strand at 194.786 kb on + strand at 194.786 kb on + strand at 194.786 kb on + strand at 194.786 kb on + strand at 194.786 kb on + strand at 194.787 kb on - strand at 194.787 kb on - strand at 194.787 kb on - strand at 194.787 kb on - strand at 194.787 kb on - strand at 194.787 kb on - strand at 194.840 kb on + strand at 194.863 kb on + strand at 194.863 kb on + strand at 194.863 kb on + strand at 194.865 kb on + strand at 194.879 kb on + strand at 194.879 kb on + strand at 194.888 kb on + strand at 194.985 kb on + strand, within Psyr_0181
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine 10 mM remove 193,918 + Psyr_0178 0.90 -1.0 193,918 + Psyr_0178 0.90 +0.1 193,918 + Psyr_0178 0.90 +0.7 193,918 + Psyr_0178 0.90 -2.6 193,919 - +0.9 193,919 - +0.1 193,919 - +1.3 193,979 - -0.9 193,979 - -0.0 193,991 + -1.5 193,991 + +2.3 193,991 + +0.1 193,992 - -1.6 194,071 + -0.7 194,071 + +0.2 194,072 - -0.9 194,075 + +1.0 194,075 + +0.0 194,075 + +0.8 194,075 + +1.8 194,075 + -0.3 194,075 + -1.7 194,075 + +1.1 194,076 - -1.5 194,076 - +0.5 194,076 - -2.0 194,076 - -0.9 194,076 - +0.2 194,258 + Psyr_0179 0.69 +1.1 194,258 + Psyr_0179 0.69 +1.1 194,449 - Psyr_0180 0.35 +2.5 194,518 + Psyr_0180 0.56 +3.0 194,518 + Psyr_0180 0.56 -0.0 194,519 - Psyr_0180 0.56 +2.3 194,519 - Psyr_0180 0.56 +0.3 194,553 - Psyr_0180 0.66 +2.0 194,553 - Psyr_0180 0.66 +0.3 194,600 + Psyr_0180 0.80 -0.1 194,600 + Psyr_0180 0.80 +1.1 194,601 - Psyr_0180 0.80 +1.9 194,601 - Psyr_0180 0.80 -0.4 194,680 + -1.0 194,680 + -1.3 194,681 - +0.0 194,694 + -0.9 194,694 + -1.9 194,695 - -0.1 194,695 - +0.2 194,713 - -1.0 194,713 - -1.5 194,741 + +0.3 194,742 - +0.4 194,742 - +0.8 194,742 - +0.4 194,742 - -0.1 194,770 + +0.2 194,786 + -0.7 194,786 + +1.0 194,786 + +0.0 194,786 + -0.2 194,786 + +0.0 194,786 + -1.8 194,787 - -1.6 194,787 - +0.2 194,787 - -0.4 194,787 - +0.8 194,787 - -4.1 194,787 - -1.6 194,840 + -2.4 194,863 + -1.2 194,863 + +0.6 194,863 + +0.1 194,865 + -0.8 194,879 + +0.5 194,879 + -3.2 194,888 + -0.1 194,985 + Psyr_0181 0.55 -2.8
Or see this region's nucleotide sequence