Experiment: KB with Levodopa 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4972 and Psyr_4973 are separated by 63 nucleotides Psyr_4973 and Psyr_4974 are separated by 33 nucleotides
Psyr_4972: Psyr_4972 - Sel1-like repeat protein, at 5,896,106 to 5,897,137
_4972
Psyr_4973: Psyr_4973 - hypothetical protein, at 5,897,201 to 5,898,283
_4973
Psyr_4974: Psyr_4974 - Rhs element Vgr protein, at 5,898,317 to 5,901,193
_4974
Position (kb) 5897
5898
5899 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5896.296 kb on + strand, within Psyr_4972 at 5896.297 kb on - strand, within Psyr_4972 at 5896.329 kb on - strand, within Psyr_4972 at 5896.372 kb on + strand, within Psyr_4972 at 5896.376 kb on + strand, within Psyr_4972 at 5896.377 kb on - strand, within Psyr_4972 at 5896.378 kb on + strand, within Psyr_4972 at 5896.378 kb on + strand, within Psyr_4972 at 5896.379 kb on - strand, within Psyr_4972 at 5896.379 kb on - strand, within Psyr_4972 at 5896.441 kb on + strand, within Psyr_4972 at 5896.514 kb on + strand, within Psyr_4972 at 5896.518 kb on + strand, within Psyr_4972 at 5896.549 kb on - strand, within Psyr_4972 at 5896.553 kb on - strand, within Psyr_4972 at 5896.553 kb on - strand, within Psyr_4972 at 5896.553 kb on - strand, within Psyr_4972 at 5896.570 kb on - strand, within Psyr_4972 at 5896.610 kb on + strand, within Psyr_4972 at 5896.610 kb on + strand, within Psyr_4972 at 5896.610 kb on + strand, within Psyr_4972 at 5896.611 kb on - strand, within Psyr_4972 at 5896.613 kb on - strand, within Psyr_4972 at 5896.668 kb on - strand, within Psyr_4972 at 5896.668 kb on - strand, within Psyr_4972 at 5896.721 kb on + strand, within Psyr_4972 at 5896.742 kb on + strand, within Psyr_4972 at 5896.778 kb on - strand, within Psyr_4972 at 5896.892 kb on + strand, within Psyr_4972 at 5896.892 kb on + strand, within Psyr_4972 at 5896.914 kb on + strand, within Psyr_4972 at 5896.915 kb on - strand, within Psyr_4972 at 5896.915 kb on - strand, within Psyr_4972 at 5896.917 kb on + strand, within Psyr_4972 at 5896.917 kb on + strand, within Psyr_4972 at 5896.917 kb on + strand, within Psyr_4972 at 5896.917 kb on + strand, within Psyr_4972 at 5897.105 kb on - strand at 5897.146 kb on + strand at 5897.146 kb on + strand at 5897.147 kb on - strand at 5897.189 kb on + strand at 5897.189 kb on + strand at 5897.215 kb on + strand at 5897.221 kb on + strand at 5897.221 kb on + strand at 5897.221 kb on + strand at 5897.222 kb on - strand at 5897.222 kb on - strand at 5897.222 kb on - strand at 5897.222 kb on - strand at 5897.225 kb on + strand at 5897.225 kb on + strand at 5897.225 kb on + strand at 5897.225 kb on + strand at 5897.225 kb on + strand at 5897.225 kb on + strand at 5897.225 kb on + strand at 5897.225 kb on + strand at 5897.226 kb on - strand at 5897.226 kb on - strand at 5897.226 kb on - strand at 5897.226 kb on - strand at 5897.226 kb on - strand at 5897.226 kb on - strand at 5897.358 kb on + strand, within Psyr_4973 at 5897.358 kb on + strand, within Psyr_4973 at 5897.358 kb on + strand, within Psyr_4973 at 5897.359 kb on - strand, within Psyr_4973 at 5897.359 kb on - strand, within Psyr_4973 at 5897.359 kb on - strand, within Psyr_4973 at 5897.602 kb on + strand, within Psyr_4973 at 5897.603 kb on - strand, within Psyr_4973 at 5897.603 kb on - strand, within Psyr_4973 at 5897.608 kb on + strand, within Psyr_4973 at 5897.608 kb on + strand, within Psyr_4973 at 5897.608 kb on + strand, within Psyr_4973 at 5897.609 kb on - strand, within Psyr_4973 at 5897.609 kb on - strand, within Psyr_4973 at 5897.675 kb on + strand, within Psyr_4973 at 5897.675 kb on + strand, within Psyr_4973 at 5897.678 kb on + strand, within Psyr_4973 at 5897.741 kb on + strand, within Psyr_4973 at 5897.741 kb on + strand, within Psyr_4973 at 5897.742 kb on - strand, within Psyr_4973 at 5897.742 kb on - strand, within Psyr_4973 at 5897.753 kb on + strand, within Psyr_4973 at 5897.753 kb on + strand, within Psyr_4973 at 5897.991 kb on + strand, within Psyr_4973 at 5897.991 kb on + strand, within Psyr_4973 at 5897.992 kb on - strand, within Psyr_4973 at 5897.992 kb on - strand, within Psyr_4973 at 5897.992 kb on - strand, within Psyr_4973 at 5897.992 kb on - strand, within Psyr_4973 at 5898.084 kb on - strand, within Psyr_4973 at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.312 kb on + strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.313 kb on - strand at 5898.316 kb on + strand at 5898.316 kb on + strand at 5898.316 kb on + strand at 5898.317 kb on - strand at 5898.317 kb on - strand at 5898.597 kb on - strand at 5898.671 kb on - strand, within Psyr_4974 at 5898.735 kb on - strand, within Psyr_4974 at 5898.794 kb on + strand, within Psyr_4974 at 5898.794 kb on + strand, within Psyr_4974 at 5898.794 kb on + strand, within Psyr_4974 at 5898.794 kb on + strand, within Psyr_4974 at 5898.794 kb on + strand, within Psyr_4974 at 5898.794 kb on + strand, within Psyr_4974 at 5898.795 kb on - strand, within Psyr_4974 at 5898.795 kb on - strand, within Psyr_4974 at 5898.795 kb on - strand, within Psyr_4974 at 5898.795 kb on - strand, within Psyr_4974 at 5898.795 kb on - strand, within Psyr_4974 at 5898.867 kb on - strand, within Psyr_4974 at 5898.867 kb on - strand, within Psyr_4974 at 5898.867 kb on - strand, within Psyr_4974 at 5899.148 kb on + strand, within Psyr_4974 at 5899.148 kb on + strand, within Psyr_4974 at 5899.148 kb on + strand, within Psyr_4974 at 5899.149 kb on - strand, within Psyr_4974
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM remove 5,896,296 + Psyr_4972 0.18 +0.8 5,896,297 - Psyr_4972 0.19 +0.0 5,896,329 - Psyr_4972 0.22 -0.7 5,896,372 + Psyr_4972 0.26 +0.1 5,896,376 + Psyr_4972 0.26 +0.8 5,896,377 - Psyr_4972 0.26 -1.5 5,896,378 + Psyr_4972 0.26 -0.6 5,896,378 + Psyr_4972 0.26 +2.9 5,896,379 - Psyr_4972 0.26 -1.2 5,896,379 - Psyr_4972 0.26 -1.4 5,896,441 + Psyr_4972 0.32 -0.9 5,896,514 + Psyr_4972 0.40 +1.0 5,896,518 + Psyr_4972 0.40 -1.4 5,896,549 - Psyr_4972 0.43 -0.5 5,896,553 - Psyr_4972 0.43 +0.0 5,896,553 - Psyr_4972 0.43 -1.2 5,896,553 - Psyr_4972 0.43 -1.0 5,896,570 - Psyr_4972 0.45 -1.1 5,896,610 + Psyr_4972 0.49 -1.0 5,896,610 + Psyr_4972 0.49 -2.0 5,896,610 + Psyr_4972 0.49 +0.8 5,896,611 - Psyr_4972 0.49 +0.1 5,896,613 - Psyr_4972 0.49 -1.6 5,896,668 - Psyr_4972 0.54 -0.4 5,896,668 - Psyr_4972 0.54 -2.9 5,896,721 + Psyr_4972 0.60 -1.4 5,896,742 + Psyr_4972 0.62 -1.0 5,896,778 - Psyr_4972 0.65 +0.7 5,896,892 + Psyr_4972 0.76 -0.5 5,896,892 + Psyr_4972 0.76 +1.2 5,896,914 + Psyr_4972 0.78 +0.2 5,896,915 - Psyr_4972 0.78 -0.6 5,896,915 - Psyr_4972 0.78 -1.5 5,896,917 + Psyr_4972 0.79 +0.1 5,896,917 + Psyr_4972 0.79 -1.9 5,896,917 + Psyr_4972 0.79 -0.1 5,896,917 + Psyr_4972 0.79 -0.6 5,897,105 - +0.8 5,897,146 + +0.5 5,897,146 + +0.5 5,897,147 - +2.7 5,897,189 + -0.0 5,897,189 + +0.1 5,897,215 + -0.6 5,897,221 + -1.6 5,897,221 + -0.8 5,897,221 + +3.6 5,897,222 - +1.1 5,897,222 - -0.3 5,897,222 - -0.7 5,897,222 - +0.3 5,897,225 + +0.5 5,897,225 + -0.5 5,897,225 + +1.7 5,897,225 + -1.3 5,897,225 + -1.6 5,897,225 + +0.0 5,897,225 + -1.7 5,897,225 + +1.1 5,897,226 - +0.4 5,897,226 - -0.9 5,897,226 - -0.0 5,897,226 - -0.5 5,897,226 - +1.0 5,897,226 - -1.5 5,897,358 + Psyr_4973 0.14 +3.4 5,897,358 + Psyr_4973 0.14 +1.4 5,897,358 + Psyr_4973 0.14 -0.3 5,897,359 - Psyr_4973 0.15 -1.0 5,897,359 - Psyr_4973 0.15 -0.5 5,897,359 - Psyr_4973 0.15 +0.1 5,897,602 + Psyr_4973 0.37 +1.5 5,897,603 - Psyr_4973 0.37 +0.4 5,897,603 - Psyr_4973 0.37 -0.5 5,897,608 + Psyr_4973 0.38 -0.0 5,897,608 + Psyr_4973 0.38 -0.1 5,897,608 + Psyr_4973 0.38 -1.8 5,897,609 - Psyr_4973 0.38 -0.0 5,897,609 - Psyr_4973 0.38 -1.0 5,897,675 + Psyr_4973 0.44 +0.4 5,897,675 + Psyr_4973 0.44 -0.4 5,897,678 + Psyr_4973 0.44 +0.2 5,897,741 + Psyr_4973 0.50 -1.5 5,897,741 + Psyr_4973 0.50 -0.3 5,897,742 - Psyr_4973 0.50 -0.6 5,897,742 - Psyr_4973 0.50 +0.9 5,897,753 + Psyr_4973 0.51 -0.4 5,897,753 + Psyr_4973 0.51 -0.4 5,897,991 + Psyr_4973 0.73 -0.4 5,897,991 + Psyr_4973 0.73 -1.7 5,897,992 - Psyr_4973 0.73 -0.1 5,897,992 - Psyr_4973 0.73 -1.2 5,897,992 - Psyr_4973 0.73 -0.3 5,897,992 - Psyr_4973 0.73 +1.8 5,898,084 - Psyr_4973 0.82 +0.5 5,898,312 + +0.2 5,898,312 + -0.2 5,898,312 + -0.0 5,898,312 + +0.6 5,898,312 + -0.1 5,898,312 + -0.5 5,898,312 + -0.7 5,898,312 + -1.0 5,898,312 + +0.5 5,898,312 + -1.0 5,898,312 + +2.6 5,898,312 + -1.3 5,898,312 + -0.3 5,898,312 + -2.6 5,898,312 + +2.3 5,898,312 + -0.9 5,898,312 + -0.4 5,898,312 + -0.6 5,898,312 + +1.5 5,898,312 + +0.8 5,898,313 - -0.5 5,898,313 - +2.3 5,898,313 - -1.8 5,898,313 - +0.7 5,898,313 - +1.3 5,898,313 - +0.9 5,898,313 - -1.7 5,898,313 - -0.1 5,898,313 - -0.6 5,898,313 - +0.9 5,898,313 - -2.0 5,898,313 - +1.2 5,898,313 - -1.7 5,898,313 - -0.6 5,898,313 - +0.9 5,898,313 - +0.9 5,898,313 - +0.4 5,898,316 + +0.6 5,898,316 + +0.9 5,898,316 + -2.8 5,898,317 - -0.4 5,898,317 - -1.0 5,898,597 - +2.1 5,898,671 - Psyr_4974 0.12 +0.1 5,898,735 - Psyr_4974 0.15 +0.7 5,898,794 + Psyr_4974 0.17 +0.6 5,898,794 + Psyr_4974 0.17 +0.1 5,898,794 + Psyr_4974 0.17 +0.8 5,898,794 + Psyr_4974 0.17 +0.7 5,898,794 + Psyr_4974 0.17 +0.6 5,898,794 + Psyr_4974 0.17 -0.7 5,898,795 - Psyr_4974 0.17 +0.0 5,898,795 - Psyr_4974 0.17 +0.7 5,898,795 - Psyr_4974 0.17 -0.0 5,898,795 - Psyr_4974 0.17 -1.1 5,898,795 - Psyr_4974 0.17 -1.0 5,898,867 - Psyr_4974 0.19 -0.4 5,898,867 - Psyr_4974 0.19 +1.1 5,898,867 - Psyr_4974 0.19 -0.5 5,899,148 + Psyr_4974 0.29 -0.5 5,899,148 + Psyr_4974 0.29 -0.5 5,899,148 + Psyr_4974 0.29 -0.7 5,899,149 - Psyr_4974 0.29 +0.1
Or see this region's nucleotide sequence