Experiment: KB with Levodopa 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4927 and Psyr_4928 are separated by 43 nucleotides Psyr_4928 and Psyr_4929 are separated by 166 nucleotides Psyr_4929 and Psyr_4930 are separated by 271 nucleotides
Psyr_4927: Psyr_4927 - ATP-dependent DNA helicase recG, at 5,840,727 to 5,841,323
_4927
Psyr_4928: Psyr_4928 - conserved hypothetical protein, at 5,841,367 to 5,841,954
_4928
Psyr_4929: Psyr_4929 - conserved hypothetical protein, at 5,842,121 to 5,842,591
_4929
Psyr_4930: Psyr_4930 - outer membrane porin, at 5,842,863 to 5,844,137
_4930
Position (kb) 5842
5843 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5841.124 kb on + strand, within Psyr_4927 at 5841.125 kb on - strand, within Psyr_4927 at 5841.140 kb on + strand, within Psyr_4927 at 5841.141 kb on - strand, within Psyr_4927 at 5841.164 kb on + strand, within Psyr_4927 at 5841.164 kb on + strand, within Psyr_4927 at 5841.165 kb on - strand, within Psyr_4927 at 5841.165 kb on - strand, within Psyr_4927 at 5841.249 kb on + strand, within Psyr_4927 at 5841.250 kb on - strand, within Psyr_4927 at 5841.250 kb on - strand, within Psyr_4927 at 5841.250 kb on - strand, within Psyr_4927 at 5841.250 kb on - strand, within Psyr_4927 at 5841.277 kb on + strand at 5841.277 kb on + strand at 5841.277 kb on + strand at 5841.278 kb on - strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.315 kb on + strand at 5841.316 kb on - strand at 5841.316 kb on - strand at 5841.316 kb on - strand at 5841.318 kb on - strand at 5841.318 kb on - strand at 5841.339 kb on + strand at 5841.340 kb on - strand at 5841.340 kb on - strand at 5841.369 kb on - strand at 5841.390 kb on - strand at 5841.397 kb on + strand at 5841.611 kb on + strand, within Psyr_4928 at 5841.612 kb on - strand, within Psyr_4928 at 5841.776 kb on + strand, within Psyr_4928 at 5841.777 kb on - strand, within Psyr_4928 at 5841.777 kb on - strand, within Psyr_4928 at 5841.777 kb on - strand, within Psyr_4928 at 5841.985 kb on + strand at 5841.986 kb on - strand at 5841.986 kb on - strand at 5841.998 kb on + strand at 5841.998 kb on + strand at 5841.999 kb on - strand at 5841.999 kb on - strand at 5842.030 kb on - strand at 5842.030 kb on - strand at 5842.043 kb on + strand at 5842.043 kb on + strand at 5842.043 kb on + strand at 5842.044 kb on - strand at 5842.045 kb on + strand at 5842.046 kb on - strand at 5842.046 kb on - strand at 5842.173 kb on - strand, within Psyr_4929 at 5842.208 kb on + strand, within Psyr_4929 at 5842.208 kb on + strand, within Psyr_4929 at 5842.208 kb on + strand, within Psyr_4929 at 5842.208 kb on + strand, within Psyr_4929 at 5842.209 kb on - strand, within Psyr_4929 at 5842.209 kb on - strand, within Psyr_4929 at 5842.236 kb on + strand, within Psyr_4929 at 5842.236 kb on + strand, within Psyr_4929 at 5842.236 kb on + strand, within Psyr_4929 at 5842.236 kb on + strand, within Psyr_4929 at 5842.237 kb on - strand, within Psyr_4929 at 5842.237 kb on - strand, within Psyr_4929 at 5842.241 kb on + strand, within Psyr_4929 at 5842.241 kb on + strand, within Psyr_4929 at 5842.241 kb on + strand, within Psyr_4929 at 5842.242 kb on - strand, within Psyr_4929 at 5842.242 kb on - strand, within Psyr_4929 at 5842.242 kb on - strand, within Psyr_4929 at 5842.242 kb on - strand, within Psyr_4929 at 5842.242 kb on - strand, within Psyr_4929 at 5842.242 kb on - strand, within Psyr_4929 at 5842.242 kb on - strand, within Psyr_4929 at 5842.288 kb on + strand, within Psyr_4929 at 5842.288 kb on + strand, within Psyr_4929 at 5842.333 kb on + strand, within Psyr_4929 at 5842.333 kb on + strand, within Psyr_4929 at 5842.334 kb on - strand, within Psyr_4929 at 5842.334 kb on - strand, within Psyr_4929 at 5842.338 kb on + strand, within Psyr_4929 at 5842.339 kb on - strand, within Psyr_4929 at 5842.439 kb on + strand, within Psyr_4929 at 5842.439 kb on + strand, within Psyr_4929 at 5842.439 kb on + strand, within Psyr_4929 at 5842.439 kb on + strand, within Psyr_4929 at 5842.440 kb on - strand, within Psyr_4929 at 5842.440 kb on - strand, within Psyr_4929 at 5842.440 kb on - strand, within Psyr_4929 at 5842.545 kb on + strand at 5842.546 kb on - strand at 5842.646 kb on - strand at 5842.646 kb on - strand at 5842.673 kb on + strand at 5842.673 kb on + strand at 5842.674 kb on - strand at 5842.674 kb on - strand at 5842.674 kb on - strand at 5842.674 kb on - strand at 5842.789 kb on + strand at 5842.789 kb on + strand at 5842.789 kb on + strand at 5842.789 kb on + strand at 5842.789 kb on + strand at 5842.789 kb on + strand at 5842.789 kb on + strand at 5842.789 kb on + strand at 5842.789 kb on + strand at 5842.789 kb on + strand at 5842.789 kb on + strand at 5842.789 kb on + strand at 5842.789 kb on + strand at 5842.789 kb on + strand at 5842.791 kb on + strand at 5842.791 kb on + strand at 5842.883 kb on - strand at 5842.921 kb on + strand at 5842.921 kb on + strand at 5842.921 kb on + strand at 5842.921 kb on + strand at 5842.921 kb on + strand at 5842.921 kb on + strand at 5842.922 kb on - strand at 5842.922 kb on - strand at 5842.922 kb on - strand at 5843.005 kb on + strand, within Psyr_4930 at 5843.005 kb on + strand, within Psyr_4930 at 5843.005 kb on + strand, within Psyr_4930 at 5843.005 kb on + strand, within Psyr_4930 at 5843.005 kb on + strand, within Psyr_4930 at 5843.005 kb on + strand, within Psyr_4930 at 5843.005 kb on + strand, within Psyr_4930 at 5843.005 kb on + strand, within Psyr_4930 at 5843.005 kb on + strand, within Psyr_4930 at 5843.006 kb on - strand, within Psyr_4930 at 5843.006 kb on - strand, within Psyr_4930 at 5843.006 kb on - strand, within Psyr_4930 at 5843.022 kb on + strand, within Psyr_4930 at 5843.023 kb on - strand, within Psyr_4930 at 5843.023 kb on - strand, within Psyr_4930 at 5843.023 kb on - strand, within Psyr_4930 at 5843.082 kb on + strand, within Psyr_4930 at 5843.083 kb on - strand, within Psyr_4930 at 5843.086 kb on + strand, within Psyr_4930 at 5843.086 kb on + strand, within Psyr_4930 at 5843.086 kb on + strand, within Psyr_4930 at 5843.086 kb on + strand, within Psyr_4930 at 5843.087 kb on - strand, within Psyr_4930 at 5843.087 kb on - strand, within Psyr_4930 at 5843.098 kb on + strand, within Psyr_4930 at 5843.098 kb on + strand, within Psyr_4930 at 5843.098 kb on + strand, within Psyr_4930 at 5843.098 kb on + strand, within Psyr_4930 at 5843.098 kb on + strand, within Psyr_4930 at 5843.098 kb on + strand, within Psyr_4930 at 5843.099 kb on - strand, within Psyr_4930 at 5843.099 kb on - strand, within Psyr_4930 at 5843.102 kb on + strand, within Psyr_4930 at 5843.102 kb on + strand, within Psyr_4930 at 5843.103 kb on - strand, within Psyr_4930 at 5843.103 kb on - strand, within Psyr_4930 at 5843.103 kb on - strand, within Psyr_4930 at 5843.103 kb on - strand, within Psyr_4930 at 5843.203 kb on + strand, within Psyr_4930 at 5843.203 kb on + strand, within Psyr_4930 at 5843.203 kb on + strand, within Psyr_4930 at 5843.203 kb on + strand, within Psyr_4930 at 5843.203 kb on + strand, within Psyr_4930 at 5843.203 kb on + strand, within Psyr_4930 at 5843.204 kb on - strand, within Psyr_4930 at 5843.204 kb on - strand, within Psyr_4930 at 5843.254 kb on + strand, within Psyr_4930 at 5843.446 kb on + strand, within Psyr_4930 at 5843.446 kb on + strand, within Psyr_4930 at 5843.446 kb on + strand, within Psyr_4930 at 5843.446 kb on + strand, within Psyr_4930 at 5843.446 kb on + strand, within Psyr_4930 at 5843.447 kb on - strand, within Psyr_4930 at 5843.447 kb on - strand, within Psyr_4930 at 5843.447 kb on - strand, within Psyr_4930 at 5843.447 kb on - strand, within Psyr_4930 at 5843.447 kb on - strand, within Psyr_4930 at 5843.447 kb on - strand, within Psyr_4930 at 5843.447 kb on - strand, within Psyr_4930 at 5843.461 kb on + strand, within Psyr_4930 at 5843.497 kb on + strand, within Psyr_4930 at 5843.498 kb on - strand, within Psyr_4930 at 5843.498 kb on - strand, within Psyr_4930 at 5843.530 kb on + strand, within Psyr_4930 at 5843.530 kb on + strand, within Psyr_4930 at 5843.530 kb on + strand, within Psyr_4930 at 5843.531 kb on - strand, within Psyr_4930 at 5843.531 kb on - strand, within Psyr_4930
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM remove 5,841,124 + Psyr_4927 0.66 -1.3 5,841,125 - Psyr_4927 0.67 +0.2 5,841,140 + Psyr_4927 0.69 -1.1 5,841,141 - Psyr_4927 0.69 -0.9 5,841,164 + Psyr_4927 0.73 -0.1 5,841,164 + Psyr_4927 0.73 -1.0 5,841,165 - Psyr_4927 0.73 +0.5 5,841,165 - Psyr_4927 0.73 -1.2 5,841,249 + Psyr_4927 0.87 +0.7 5,841,250 - Psyr_4927 0.88 +0.3 5,841,250 - Psyr_4927 0.88 +0.6 5,841,250 - Psyr_4927 0.88 +2.0 5,841,250 - Psyr_4927 0.88 +0.9 5,841,277 + +1.0 5,841,277 + -1.4 5,841,277 + +0.5 5,841,278 - -0.3 5,841,315 + -1.0 5,841,315 + +0.1 5,841,315 + +1.4 5,841,315 + -1.9 5,841,315 + +1.7 5,841,315 + -0.9 5,841,315 + +1.4 5,841,315 + +1.1 5,841,315 + +0.3 5,841,315 + -1.7 5,841,315 + -0.3 5,841,315 + -0.1 5,841,315 + +1.0 5,841,316 - +0.8 5,841,316 - +0.3 5,841,316 - -0.0 5,841,318 - -1.1 5,841,318 - -0.0 5,841,339 + -0.3 5,841,340 - -0.3 5,841,340 - -0.5 5,841,369 - +0.8 5,841,390 - -0.4 5,841,397 + -0.0 5,841,611 + Psyr_4928 0.41 -0.6 5,841,612 - Psyr_4928 0.42 +1.1 5,841,776 + Psyr_4928 0.70 +0.5 5,841,777 - Psyr_4928 0.70 +1.4 5,841,777 - Psyr_4928 0.70 -0.3 5,841,777 - Psyr_4928 0.70 +2.3 5,841,985 + -0.3 5,841,986 - +0.3 5,841,986 - -1.5 5,841,998 + +0.8 5,841,998 + -0.5 5,841,999 - +0.7 5,841,999 - -1.3 5,842,030 - +0.3 5,842,030 - -1.9 5,842,043 + +0.4 5,842,043 + +0.7 5,842,043 + -1.0 5,842,044 - +0.4 5,842,045 + -0.5 5,842,046 - +0.1 5,842,046 - +0.6 5,842,173 - Psyr_4929 0.11 +0.1 5,842,208 + Psyr_4929 0.18 -0.5 5,842,208 + Psyr_4929 0.18 +0.1 5,842,208 + Psyr_4929 0.18 -0.0 5,842,208 + Psyr_4929 0.18 +1.3 5,842,209 - Psyr_4929 0.19 +1.0 5,842,209 - Psyr_4929 0.19 +1.3 5,842,236 + Psyr_4929 0.24 -0.6 5,842,236 + Psyr_4929 0.24 -0.8 5,842,236 + Psyr_4929 0.24 -0.2 5,842,236 + Psyr_4929 0.24 -0.7 5,842,237 - Psyr_4929 0.25 +0.9 5,842,237 - Psyr_4929 0.25 +0.6 5,842,241 + Psyr_4929 0.25 +0.3 5,842,241 + Psyr_4929 0.25 -0.5 5,842,241 + Psyr_4929 0.25 -1.7 5,842,242 - Psyr_4929 0.26 +0.7 5,842,242 - Psyr_4929 0.26 -2.4 5,842,242 - Psyr_4929 0.26 -0.9 5,842,242 - Psyr_4929 0.26 -0.1 5,842,242 - Psyr_4929 0.26 +1.1 5,842,242 - Psyr_4929 0.26 -0.3 5,842,242 - Psyr_4929 0.26 +0.8 5,842,288 + Psyr_4929 0.35 -0.2 5,842,288 + Psyr_4929 0.35 -1.0 5,842,333 + Psyr_4929 0.45 -0.2 5,842,333 + Psyr_4929 0.45 +0.3 5,842,334 - Psyr_4929 0.45 -0.4 5,842,334 - Psyr_4929 0.45 +0.2 5,842,338 + Psyr_4929 0.46 +1.1 5,842,339 - Psyr_4929 0.46 -1.0 5,842,439 + Psyr_4929 0.68 -2.8 5,842,439 + Psyr_4929 0.68 -2.4 5,842,439 + Psyr_4929 0.68 -0.6 5,842,439 + Psyr_4929 0.68 +0.8 5,842,440 - Psyr_4929 0.68 -0.4 5,842,440 - Psyr_4929 0.68 +0.0 5,842,440 - Psyr_4929 0.68 +0.9 5,842,545 + +0.5 5,842,546 - +1.3 5,842,646 - -0.9 5,842,646 - -1.0 5,842,673 + -1.8 5,842,673 + +0.8 5,842,674 - -1.7 5,842,674 - -0.5 5,842,674 - -0.7 5,842,674 - +0.4 5,842,789 + +0.4 5,842,789 + +1.0 5,842,789 + -0.5 5,842,789 + -0.7 5,842,789 + +0.9 5,842,789 + -0.1 5,842,789 + -1.3 5,842,789 + -0.8 5,842,789 + +2.1 5,842,789 + +0.1 5,842,789 + -3.0 5,842,789 + -0.9 5,842,789 + +2.0 5,842,789 + -0.4 5,842,791 + +0.6 5,842,791 + -1.1 5,842,883 - -0.2 5,842,921 + -1.0 5,842,921 + +0.4 5,842,921 + -1.5 5,842,921 + +0.3 5,842,921 + -0.2 5,842,921 + +0.9 5,842,922 - -1.0 5,842,922 - -0.3 5,842,922 - +0.3 5,843,005 + Psyr_4930 0.11 +0.1 5,843,005 + Psyr_4930 0.11 +1.0 5,843,005 + Psyr_4930 0.11 -1.3 5,843,005 + Psyr_4930 0.11 -0.4 5,843,005 + Psyr_4930 0.11 -2.5 5,843,005 + Psyr_4930 0.11 -0.8 5,843,005 + Psyr_4930 0.11 -2.5 5,843,005 + Psyr_4930 0.11 -0.7 5,843,005 + Psyr_4930 0.11 -3.1 5,843,006 - Psyr_4930 0.11 +1.4 5,843,006 - Psyr_4930 0.11 +1.5 5,843,006 - Psyr_4930 0.11 +0.8 5,843,022 + Psyr_4930 0.12 +0.0 5,843,023 - Psyr_4930 0.13 +1.0 5,843,023 - Psyr_4930 0.13 -0.2 5,843,023 - Psyr_4930 0.13 +0.3 5,843,082 + Psyr_4930 0.17 -0.2 5,843,083 - Psyr_4930 0.17 +0.4 5,843,086 + Psyr_4930 0.17 +0.2 5,843,086 + Psyr_4930 0.17 +2.1 5,843,086 + Psyr_4930 0.17 -0.3 5,843,086 + Psyr_4930 0.17 +1.3 5,843,087 - Psyr_4930 0.18 -0.3 5,843,087 - Psyr_4930 0.18 +1.3 5,843,098 + Psyr_4930 0.18 +0.1 5,843,098 + Psyr_4930 0.18 -0.2 5,843,098 + Psyr_4930 0.18 +0.6 5,843,098 + Psyr_4930 0.18 +0.1 5,843,098 + Psyr_4930 0.18 -1.0 5,843,098 + Psyr_4930 0.18 +0.2 5,843,099 - Psyr_4930 0.19 -2.0 5,843,099 - Psyr_4930 0.19 +1.6 5,843,102 + Psyr_4930 0.19 +0.7 5,843,102 + Psyr_4930 0.19 +1.3 5,843,103 - Psyr_4930 0.19 +1.3 5,843,103 - Psyr_4930 0.19 -1.6 5,843,103 - Psyr_4930 0.19 -1.1 5,843,103 - Psyr_4930 0.19 +0.8 5,843,203 + Psyr_4930 0.27 -0.1 5,843,203 + Psyr_4930 0.27 +0.1 5,843,203 + Psyr_4930 0.27 +1.2 5,843,203 + Psyr_4930 0.27 -1.5 5,843,203 + Psyr_4930 0.27 +0.3 5,843,203 + Psyr_4930 0.27 +0.3 5,843,204 - Psyr_4930 0.27 +0.0 5,843,204 - Psyr_4930 0.27 +0.6 5,843,254 + Psyr_4930 0.31 -1.3 5,843,446 + Psyr_4930 0.46 -0.7 5,843,446 + Psyr_4930 0.46 +0.2 5,843,446 + Psyr_4930 0.46 +0.5 5,843,446 + Psyr_4930 0.46 -2.5 5,843,446 + Psyr_4930 0.46 +1.1 5,843,447 - Psyr_4930 0.46 -1.0 5,843,447 - Psyr_4930 0.46 -1.5 5,843,447 - Psyr_4930 0.46 -0.5 5,843,447 - Psyr_4930 0.46 -2.0 5,843,447 - Psyr_4930 0.46 +3.3 5,843,447 - Psyr_4930 0.46 +1.9 5,843,447 - Psyr_4930 0.46 +0.1 5,843,461 + Psyr_4930 0.47 +0.1 5,843,497 + Psyr_4930 0.50 -0.5 5,843,498 - Psyr_4930 0.50 +1.3 5,843,498 - Psyr_4930 0.50 -0.3 5,843,530 + Psyr_4930 0.52 -0.1 5,843,530 + Psyr_4930 0.52 -0.2 5,843,530 + Psyr_4930 0.52 -0.1 5,843,531 - Psyr_4930 0.52 +1.5 5,843,531 - Psyr_4930 0.52 -0.5
Or see this region's nucleotide sequence