Experiment: KB with Levodopa 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4816 and Psyr_4817 are separated by 336 nucleotides Psyr_4817 and Psyr_4818 are separated by 163 nucleotides Psyr_4818 and Psyr_4819 are separated by 32 nucleotides
Psyr_4816: Psyr_4816 - [ThiS-adenylate] sulfurtransferase, at 5,712,327 to 5,713,781
_4816
Psyr_4817: Psyr_4817 - L-glutamine synthetase, at 5,714,118 to 5,715,524
_4817
Psyr_4818: Psyr_4818 - chorismate mutase, at 5,715,688 to 5,716,245
_4818
Psyr_4819: Psyr_4819 - conserved hypothetical protein, at 5,716,278 to 5,716,859
_4819
Position (kb) 5714
5715
5716 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5713.397 kb on - strand, within Psyr_4816 at 5713.774 kb on - strand at 5713.862 kb on + strand at 5714.043 kb on + strand at 5714.043 kb on + strand at 5714.078 kb on + strand at 5714.078 kb on + strand at 5715.696 kb on + strand at 5715.735 kb on + strand at 5715.736 kb on - strand at 5715.975 kb on + strand, within Psyr_4818 at 5716.270 kb on - strand at 5716.284 kb on + strand at 5716.284 kb on + strand at 5716.285 kb on - strand at 5716.285 kb on - strand at 5716.285 kb on - strand at 5716.285 kb on - strand at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.383 kb on + strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.384 kb on - strand, within Psyr_4819 at 5716.385 kb on + strand, within Psyr_4819 at 5716.385 kb on + strand, within Psyr_4819 at 5716.385 kb on + strand, within Psyr_4819 at 5716.385 kb on + strand, within Psyr_4819 at 5716.385 kb on + strand, within Psyr_4819 at 5716.385 kb on + strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.386 kb on - strand, within Psyr_4819 at 5716.389 kb on + strand, within Psyr_4819 at 5716.389 kb on + strand, within Psyr_4819 at 5716.390 kb on - strand, within Psyr_4819 at 5716.390 kb on - strand, within Psyr_4819 at 5716.390 kb on - strand, within Psyr_4819 at 5716.390 kb on - strand, within Psyr_4819 at 5716.390 kb on - strand, within Psyr_4819 at 5716.390 kb on - strand, within Psyr_4819 at 5716.390 kb on - strand, within Psyr_4819 at 5716.463 kb on - strand, within Psyr_4819
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM remove 5,713,397 - Psyr_4816 0.74 -2.6 5,713,774 - +1.2 5,713,862 + -2.1 5,714,043 + -1.0 5,714,043 + +0.1 5,714,078 + +0.1 5,714,078 + +0.8 5,715,696 + -0.5 5,715,735 + -0.6 5,715,736 - +0.1 5,715,975 + Psyr_4818 0.51 -0.9 5,716,270 - +2.2 5,716,284 + +2.2 5,716,284 + +0.6 5,716,285 - -1.4 5,716,285 - -0.1 5,716,285 - -0.4 5,716,285 - +1.2 5,716,383 + Psyr_4819 0.18 +1.2 5,716,383 + Psyr_4819 0.18 +0.2 5,716,383 + Psyr_4819 0.18 +0.0 5,716,383 + Psyr_4819 0.18 +1.3 5,716,383 + Psyr_4819 0.18 -1.7 5,716,383 + Psyr_4819 0.18 -0.3 5,716,383 + Psyr_4819 0.18 +0.7 5,716,383 + Psyr_4819 0.18 -1.9 5,716,383 + Psyr_4819 0.18 -0.1 5,716,383 + Psyr_4819 0.18 +1.6 5,716,384 - Psyr_4819 0.18 +0.8 5,716,384 - Psyr_4819 0.18 -0.0 5,716,384 - Psyr_4819 0.18 +0.5 5,716,384 - Psyr_4819 0.18 +2.2 5,716,384 - Psyr_4819 0.18 +1.7 5,716,384 - Psyr_4819 0.18 -0.1 5,716,384 - Psyr_4819 0.18 +0.6 5,716,385 + Psyr_4819 0.18 -1.2 5,716,385 + Psyr_4819 0.18 -0.3 5,716,385 + Psyr_4819 0.18 -2.8 5,716,385 + Psyr_4819 0.18 -0.2 5,716,385 + Psyr_4819 0.18 +0.2 5,716,385 + Psyr_4819 0.18 -0.3 5,716,386 - Psyr_4819 0.19 +0.1 5,716,386 - Psyr_4819 0.19 -1.0 5,716,386 - Psyr_4819 0.19 +1.5 5,716,386 - Psyr_4819 0.19 +0.6 5,716,386 - Psyr_4819 0.19 +1.0 5,716,386 - Psyr_4819 0.19 -2.9 5,716,386 - Psyr_4819 0.19 -0.3 5,716,386 - Psyr_4819 0.19 -0.6 5,716,386 - Psyr_4819 0.19 +0.5 5,716,386 - Psyr_4819 0.19 -1.6 5,716,386 - Psyr_4819 0.19 +0.9 5,716,386 - Psyr_4819 0.19 +1.2 5,716,386 - Psyr_4819 0.19 +0.3 5,716,389 + Psyr_4819 0.19 -0.2 5,716,389 + Psyr_4819 0.19 +0.3 5,716,390 - Psyr_4819 0.19 +0.3 5,716,390 - Psyr_4819 0.19 +0.0 5,716,390 - Psyr_4819 0.19 +0.8 5,716,390 - Psyr_4819 0.19 -0.6 5,716,390 - Psyr_4819 0.19 -0.0 5,716,390 - Psyr_4819 0.19 -2.0 5,716,390 - Psyr_4819 0.19 +0.8 5,716,463 - Psyr_4819 0.32 -2.0
Or see this region's nucleotide sequence