Experiment: KB with Levodopa 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4123 and Psyr_4124 are separated by 39 nucleotides Psyr_4124 and Psyr_4125 are separated by 139 nucleotides Psyr_4125 and Psyr_4126 are separated by 99 nucleotides
Psyr_4123: Psyr_4123 - tryptophanyl-tRNA synthetase, at 4,912,176 to 4,913,525
_4123
Psyr_4124: Psyr_4124 - conserved hypothetical protein, at 4,913,565 to 4,914,200
_4124
Psyr_4125: Psyr_4125 - Protein of unknown function DUF1043, at 4,914,340 to 4,914,783
_4125
Psyr_4126: Psyr_4126 - adenylylsulfate kinase / sulfate adenylyltransferase subunit 1, at 4,914,883 to 4,916,781
_4126
Position (kb) 4913
4914
4915 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4913.544 kb on - strand at 4913.687 kb on - strand, within Psyr_4124 at 4913.687 kb on - strand, within Psyr_4124 at 4913.687 kb on - strand, within Psyr_4124 at 4913.687 kb on - strand, within Psyr_4124 at 4913.758 kb on - strand, within Psyr_4124 at 4913.861 kb on - strand, within Psyr_4124 at 4913.861 kb on - strand, within Psyr_4124 at 4914.038 kb on + strand, within Psyr_4124 at 4914.039 kb on - strand, within Psyr_4124 at 4914.063 kb on - strand, within Psyr_4124 at 4914.139 kb on + strand at 4914.177 kb on + strand at 4914.177 kb on + strand at 4914.178 kb on - strand at 4914.178 kb on - strand at 4914.178 kb on - strand at 4914.238 kb on + strand at 4914.238 kb on + strand at 4914.261 kb on + strand at 4914.261 kb on + strand at 4914.262 kb on - strand at 4914.262 kb on - strand at 4914.270 kb on + strand at 4914.270 kb on + strand at 4914.271 kb on - strand at 4914.271 kb on - strand at 4914.271 kb on - strand at 4914.271 kb on - strand at 4914.281 kb on + strand at 4914.283 kb on + strand at 4914.283 kb on + strand at 4914.283 kb on + strand at 4914.284 kb on - strand at 4914.284 kb on - strand at 4914.284 kb on - strand at 4914.284 kb on - strand at 4914.309 kb on + strand at 4914.309 kb on + strand at 4914.310 kb on - strand at 4914.310 kb on - strand at 4914.324 kb on + strand at 4914.325 kb on - strand at 4914.326 kb on + strand at 4914.326 kb on + strand at 4914.356 kb on + strand at 4914.357 kb on - strand at 4914.503 kb on + strand, within Psyr_4125 at 4914.503 kb on + strand, within Psyr_4125 at 4914.504 kb on - strand, within Psyr_4125 at 4914.781 kb on + strand at 4914.781 kb on + strand at 4914.781 kb on + strand at 4914.781 kb on + strand at 4914.782 kb on - strand at 4914.782 kb on - strand at 4914.782 kb on - strand at 4914.782 kb on - strand at 4914.782 kb on - strand at 4915.032 kb on - strand at 4915.032 kb on - strand at 4915.032 kb on - strand at 4915.082 kb on + strand, within Psyr_4126 at 4915.082 kb on + strand, within Psyr_4126 at 4915.083 kb on - strand, within Psyr_4126 at 4915.083 kb on - strand, within Psyr_4126 at 4915.083 kb on - strand, within Psyr_4126 at 4915.090 kb on - strand, within Psyr_4126
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM remove 4,913,544 - -1.7 4,913,687 - Psyr_4124 0.19 -0.0 4,913,687 - Psyr_4124 0.19 +0.6 4,913,687 - Psyr_4124 0.19 +1.5 4,913,687 - Psyr_4124 0.19 -0.6 4,913,758 - Psyr_4124 0.30 +0.8 4,913,861 - Psyr_4124 0.47 +2.1 4,913,861 - Psyr_4124 0.47 -0.9 4,914,038 + Psyr_4124 0.74 +3.1 4,914,039 - Psyr_4124 0.75 +1.3 4,914,063 - Psyr_4124 0.78 +1.1 4,914,139 + +0.0 4,914,177 + +1.7 4,914,177 + -0.7 4,914,178 - +0.7 4,914,178 - +0.6 4,914,178 - +0.7 4,914,238 + +0.1 4,914,238 + +1.0 4,914,261 + -0.5 4,914,261 + +0.9 4,914,262 - +2.9 4,914,262 - +1.2 4,914,270 + -2.2 4,914,270 + +0.9 4,914,271 - -0.4 4,914,271 - +0.5 4,914,271 - -0.3 4,914,271 - -0.2 4,914,281 + -0.2 4,914,283 + -0.4 4,914,283 + -0.0 4,914,283 + +0.2 4,914,284 - -1.3 4,914,284 - +1.7 4,914,284 - +0.8 4,914,284 - +0.7 4,914,309 + +1.7 4,914,309 + +0.0 4,914,310 - -0.3 4,914,310 - -1.0 4,914,324 + +0.4 4,914,325 - +0.4 4,914,326 + -0.9 4,914,326 + +0.5 4,914,356 + -0.3 4,914,357 - -2.5 4,914,503 + Psyr_4125 0.37 +0.5 4,914,503 + Psyr_4125 0.37 -0.4 4,914,504 - Psyr_4125 0.37 +0.7 4,914,781 + -2.0 4,914,781 + -0.1 4,914,781 + -0.3 4,914,781 + +0.2 4,914,782 - +3.3 4,914,782 - -0.8 4,914,782 - -0.5 4,914,782 - -0.0 4,914,782 - -1.4 4,915,032 - +1.2 4,915,032 - +0.2 4,915,032 - +0.4 4,915,082 + Psyr_4126 0.10 +0.4 4,915,082 + Psyr_4126 0.10 -0.2 4,915,083 - Psyr_4126 0.11 -1.0 4,915,083 - Psyr_4126 0.11 +0.4 4,915,083 - Psyr_4126 0.11 -0.1 4,915,090 - Psyr_4126 0.11 -0.7
Or see this region's nucleotide sequence