Experiment: KB with Levodopa 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0496 and Psyr_0497 are separated by 15 nucleotides Psyr_0497 and Psyr_0498 are separated by 2 nucleotides Psyr_0498 and Psyr_0499 are separated by 9 nucleotides
Psyr_0496: Psyr_0496 - membrane protein, putative, at 538,075 to 539,307
_0496
Psyr_0497: Psyr_0497 - LamB/YcsF, at 539,323 to 540,087
_0497
Psyr_0498: Psyr_0498 - Protein of unknown function DUF1445, at 540,090 to 540,884
_0498
Psyr_0499: Psyr_0499 - Urea amidolyase-related protein, at 540,894 to 542,498
_0499
Position (kb) 540
541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 539.161 kb on + strand, within Psyr_0496 at 539.161 kb on + strand, within Psyr_0496 at 539.161 kb on + strand, within Psyr_0496 at 539.162 kb on - strand, within Psyr_0496 at 539.162 kb on - strand, within Psyr_0496 at 539.162 kb on - strand, within Psyr_0496 at 539.162 kb on - strand, within Psyr_0496 at 539.162 kb on - strand, within Psyr_0496 at 539.254 kb on + strand at 539.254 kb on + strand at 539.254 kb on + strand at 539.255 kb on - strand at 539.255 kb on - strand at 539.333 kb on + strand at 539.334 kb on - strand at 539.334 kb on - strand at 539.334 kb on - strand at 539.532 kb on - strand, within Psyr_0497 at 539.590 kb on + strand, within Psyr_0497 at 539.591 kb on - strand, within Psyr_0497 at 539.644 kb on + strand, within Psyr_0497 at 539.645 kb on - strand, within Psyr_0497 at 539.645 kb on - strand, within Psyr_0497 at 539.668 kb on + strand, within Psyr_0497 at 539.668 kb on + strand, within Psyr_0497 at 539.668 kb on + strand, within Psyr_0497 at 539.669 kb on - strand, within Psyr_0497 at 539.669 kb on - strand, within Psyr_0497 at 539.669 kb on - strand, within Psyr_0497 at 539.669 kb on - strand, within Psyr_0497 at 539.669 kb on - strand, within Psyr_0497 at 539.669 kb on - strand, within Psyr_0497 at 540.229 kb on - strand, within Psyr_0498 at 540.229 kb on - strand, within Psyr_0498 at 540.229 kb on - strand, within Psyr_0498 at 540.870 kb on + strand at 540.870 kb on + strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.871 kb on - strand at 540.873 kb on + strand at 540.874 kb on - strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.880 kb on + strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.881 kb on - strand at 540.882 kb on + strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 540.883 kb on - strand at 541.138 kb on + strand, within Psyr_0499 at 541.149 kb on + strand, within Psyr_0499 at 541.149 kb on + strand, within Psyr_0499 at 541.149 kb on + strand, within Psyr_0499 at 541.149 kb on + strand, within Psyr_0499 at 541.149 kb on + strand, within Psyr_0499 at 541.149 kb on + strand, within Psyr_0499 at 541.149 kb on + strand, within Psyr_0499 at 541.149 kb on + strand, within Psyr_0499 at 541.149 kb on + strand, within Psyr_0499 at 541.150 kb on - strand, within Psyr_0499 at 541.150 kb on - strand, within Psyr_0499 at 541.150 kb on - strand, within Psyr_0499 at 541.233 kb on + strand, within Psyr_0499 at 541.234 kb on - strand, within Psyr_0499 at 541.272 kb on + strand, within Psyr_0499 at 541.370 kb on + strand, within Psyr_0499 at 541.371 kb on - strand, within Psyr_0499 at 541.569 kb on + strand, within Psyr_0499 at 541.569 kb on + strand, within Psyr_0499 at 541.569 kb on + strand, within Psyr_0499 at 541.570 kb on - strand, within Psyr_0499 at 541.848 kb on + strand, within Psyr_0499
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Levodopa 10 mM remove 539,161 + Psyr_0496 0.88 -1.5 539,161 + Psyr_0496 0.88 +0.6 539,161 + Psyr_0496 0.88 -1.2 539,162 - Psyr_0496 0.88 -0.9 539,162 - Psyr_0496 0.88 +1.6 539,162 - Psyr_0496 0.88 +0.6 539,162 - Psyr_0496 0.88 +1.2 539,162 - Psyr_0496 0.88 -0.3 539,254 + +0.4 539,254 + +1.2 539,254 + +0.6 539,255 - +2.8 539,255 - -1.2 539,333 + +1.1 539,334 - -1.1 539,334 - -0.4 539,334 - +0.8 539,532 - Psyr_0497 0.27 +2.2 539,590 + Psyr_0497 0.35 +1.2 539,591 - Psyr_0497 0.35 -0.4 539,644 + Psyr_0497 0.42 +0.5 539,645 - Psyr_0497 0.42 -1.3 539,645 - Psyr_0497 0.42 +1.0 539,668 + Psyr_0497 0.45 +1.1 539,668 + Psyr_0497 0.45 +0.9 539,668 + Psyr_0497 0.45 +2.2 539,669 - Psyr_0497 0.45 +2.5 539,669 - Psyr_0497 0.45 +1.1 539,669 - Psyr_0497 0.45 +0.9 539,669 - Psyr_0497 0.45 +0.6 539,669 - Psyr_0497 0.45 -1.4 539,669 - Psyr_0497 0.45 -0.3 540,229 - Psyr_0498 0.17 +1.0 540,229 - Psyr_0498 0.17 +0.9 540,229 - Psyr_0498 0.17 -3.2 540,870 + +0.2 540,870 + -2.1 540,871 - +1.2 540,871 - -2.1 540,871 - +0.6 540,873 + -0.6 540,874 - -1.2 540,880 + -1.9 540,880 + -0.2 540,880 + -0.8 540,880 + -1.5 540,880 + -1.9 540,880 + +1.6 540,880 + -0.1 540,881 - +0.1 540,881 - +1.6 540,881 - +0.3 540,881 - -2.1 540,881 - +0.2 540,881 - +0.6 540,881 - -0.2 540,881 - -2.0 540,881 - -0.4 540,881 - -1.6 540,882 + -0.1 540,883 - +0.0 540,883 - +0.3 540,883 - -0.4 540,883 - -0.4 540,883 - -0.5 541,138 + Psyr_0499 0.15 +0.4 541,149 + Psyr_0499 0.16 -1.5 541,149 + Psyr_0499 0.16 -0.4 541,149 + Psyr_0499 0.16 -0.2 541,149 + Psyr_0499 0.16 +3.5 541,149 + Psyr_0499 0.16 +0.1 541,149 + Psyr_0499 0.16 +2.8 541,149 + Psyr_0499 0.16 -0.9 541,149 + Psyr_0499 0.16 +1.6 541,149 + Psyr_0499 0.16 +0.7 541,150 - Psyr_0499 0.16 +0.8 541,150 - Psyr_0499 0.16 +1.7 541,150 - Psyr_0499 0.16 -1.7 541,233 + Psyr_0499 0.21 -1.4 541,234 - Psyr_0499 0.21 -0.7 541,272 + Psyr_0499 0.24 -0.3 541,370 + Psyr_0499 0.30 -0.4 541,371 - Psyr_0499 0.30 +2.0 541,569 + Psyr_0499 0.42 +2.2 541,569 + Psyr_0499 0.42 -1.0 541,569 + Psyr_0499 0.42 +0.3 541,570 - Psyr_0499 0.42 -1.2 541,848 + Psyr_0499 0.59 +2.2
Or see this region's nucleotide sequence