Experiment: KB with Piperic 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4629 and Psyr_4630 are separated by 23 nucleotides Psyr_4630 and Psyr_4631 are separated by 287 nucleotides Psyr_4631 and Psyr_4632 are separated by 120 nucleotides
Psyr_4629: Psyr_4629 - Bis(5'-nucleosyl)-tetraphosphatase (symmetrical), at 5,488,939 to 5,489,814
_4629
Psyr_4630: Psyr_4630 - thiosulfate sulfurtransferase, at 5,489,838 to 5,490,158
_4630
Psyr_4631: Psyr_4631 - PrkA serine kinase, at 5,490,446 to 5,492,368
_4631
Psyr_4632: Psyr_4632 - Protein of unknown function DUF444, at 5,492,489 to 5,493,760
_4632
Position (kb) 5490
5491
5492
5493 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 5490.064 kb on - strand, within Psyr_4630 at 5490.093 kb on + strand, within Psyr_4630 at 5490.093 kb on + strand, within Psyr_4630 at 5490.093 kb on + strand, within Psyr_4630 at 5490.093 kb on + strand, within Psyr_4630 at 5490.093 kb on + strand, within Psyr_4630 at 5490.093 kb on + strand, within Psyr_4630 at 5490.094 kb on - strand, within Psyr_4630 at 5490.159 kb on + strand at 5490.194 kb on + strand at 5490.195 kb on - strand at 5490.254 kb on + strand at 5490.273 kb on + strand at 5490.273 kb on + strand at 5490.274 kb on - strand at 5490.274 kb on - strand at 5490.274 kb on - strand at 5490.274 kb on - strand at 5490.274 kb on - strand at 5490.280 kb on - strand at 5490.285 kb on - strand at 5490.337 kb on - strand at 5490.340 kb on + strand at 5490.346 kb on + strand at 5490.375 kb on + strand at 5490.375 kb on + strand at 5490.375 kb on + strand at 5490.375 kb on + strand at 5490.376 kb on - strand at 5490.376 kb on - strand at 5490.376 kb on - strand at 5490.378 kb on + strand at 5490.378 kb on + strand at 5490.378 kb on + strand at 5490.379 kb on - strand at 5490.379 kb on - strand at 5490.379 kb on - strand at 5490.381 kb on + strand at 5490.382 kb on - strand at 5490.382 kb on - strand at 5490.451 kb on + strand at 5490.451 kb on + strand at 5490.451 kb on + strand at 5490.451 kb on + strand at 5490.451 kb on + strand at 5490.451 kb on + strand at 5490.452 kb on - strand at 5490.452 kb on - strand at 5490.452 kb on - strand at 5490.453 kb on + strand at 5490.453 kb on + strand at 5490.454 kb on - strand at 5490.454 kb on - strand at 5490.454 kb on - strand at 5490.454 kb on - strand at 5490.454 kb on - strand at 5490.515 kb on + strand at 5490.516 kb on - strand at 5490.548 kb on + strand at 5490.604 kb on + strand at 5490.604 kb on + strand at 5490.605 kb on - strand at 5490.651 kb on + strand, within Psyr_4631 at 5490.652 kb on - strand, within Psyr_4631 at 5490.764 kb on + strand, within Psyr_4631 at 5490.764 kb on + strand, within Psyr_4631 at 5490.764 kb on + strand, within Psyr_4631 at 5490.842 kb on + strand, within Psyr_4631 at 5490.842 kb on + strand, within Psyr_4631 at 5490.843 kb on - strand, within Psyr_4631 at 5490.843 kb on - strand, within Psyr_4631 at 5490.843 kb on - strand, within Psyr_4631 at 5490.843 kb on - strand, within Psyr_4631 at 5490.944 kb on + strand, within Psyr_4631 at 5490.944 kb on + strand, within Psyr_4631 at 5490.945 kb on - strand, within Psyr_4631 at 5491.172 kb on + strand, within Psyr_4631 at 5491.172 kb on + strand, within Psyr_4631 at 5491.173 kb on - strand, within Psyr_4631 at 5491.173 kb on - strand, within Psyr_4631 at 5491.173 kb on - strand, within Psyr_4631 at 5491.283 kb on + strand, within Psyr_4631 at 5491.283 kb on + strand, within Psyr_4631 at 5491.283 kb on + strand, within Psyr_4631 at 5491.283 kb on + strand, within Psyr_4631 at 5491.283 kb on + strand, within Psyr_4631 at 5491.283 kb on + strand, within Psyr_4631 at 5491.283 kb on + strand, within Psyr_4631 at 5491.284 kb on - strand, within Psyr_4631 at 5491.284 kb on - strand, within Psyr_4631 at 5491.284 kb on - strand, within Psyr_4631 at 5491.284 kb on - strand, within Psyr_4631 at 5491.284 kb on - strand, within Psyr_4631 at 5491.284 kb on - strand, within Psyr_4631 at 5491.284 kb on - strand, within Psyr_4631 at 5491.403 kb on - strand, within Psyr_4631 at 5491.403 kb on - strand, within Psyr_4631 at 5491.403 kb on - strand, within Psyr_4631 at 5491.406 kb on + strand, within Psyr_4631 at 5491.406 kb on + strand, within Psyr_4631 at 5491.406 kb on + strand, within Psyr_4631 at 5491.406 kb on + strand, within Psyr_4631 at 5491.406 kb on + strand, within Psyr_4631 at 5491.406 kb on + strand, within Psyr_4631 at 5491.406 kb on + strand, within Psyr_4631 at 5491.407 kb on - strand, within Psyr_4631 at 5491.407 kb on - strand, within Psyr_4631 at 5491.407 kb on - strand, within Psyr_4631 at 5491.577 kb on + strand, within Psyr_4631 at 5491.577 kb on + strand, within Psyr_4631 at 5491.577 kb on + strand, within Psyr_4631 at 5491.577 kb on + strand, within Psyr_4631 at 5491.577 kb on + strand, within Psyr_4631 at 5491.577 kb on + strand, within Psyr_4631 at 5491.595 kb on + strand, within Psyr_4631 at 5491.595 kb on + strand, within Psyr_4631 at 5491.595 kb on + strand, within Psyr_4631 at 5491.596 kb on - strand, within Psyr_4631 at 5491.596 kb on - strand, within Psyr_4631 at 5491.649 kb on + strand, within Psyr_4631 at 5491.775 kb on + strand, within Psyr_4631 at 5491.775 kb on + strand, within Psyr_4631 at 5491.775 kb on + strand, within Psyr_4631 at 5491.776 kb on - strand, within Psyr_4631 at 5491.776 kb on - strand, within Psyr_4631 at 5491.832 kb on + strand, within Psyr_4631 at 5491.854 kb on - strand, within Psyr_4631 at 5491.854 kb on - strand, within Psyr_4631 at 5491.854 kb on - strand, within Psyr_4631 at 5491.854 kb on - strand, within Psyr_4631 at 5491.869 kb on - strand, within Psyr_4631 at 5491.904 kb on + strand, within Psyr_4631 at 5491.905 kb on - strand, within Psyr_4631 at 5491.926 kb on - strand, within Psyr_4631 at 5491.958 kb on + strand, within Psyr_4631 at 5491.958 kb on + strand, within Psyr_4631 at 5491.958 kb on + strand, within Psyr_4631 at 5491.959 kb on - strand, within Psyr_4631 at 5491.959 kb on - strand, within Psyr_4631 at 5491.959 kb on - strand, within Psyr_4631 at 5491.959 kb on - strand, within Psyr_4631 at 5491.988 kb on + strand, within Psyr_4631 at 5492.322 kb on + strand at 5492.322 kb on + strand at 5492.322 kb on + strand at 5492.323 kb on - strand at 5492.323 kb on - strand at 5492.323 kb on - strand at 5492.323 kb on - strand at 5492.323 kb on - strand at 5492.323 kb on - strand at 5492.323 kb on - strand at 5492.323 kb on - strand at 5492.323 kb on - strand at 5492.342 kb on + strand at 5492.366 kb on + strand at 5492.367 kb on - strand at 5492.390 kb on - strand at 5492.461 kb on + strand at 5492.461 kb on + strand at 5492.461 kb on + strand at 5492.461 kb on + strand at 5492.461 kb on + strand at 5492.462 kb on - strand at 5492.462 kb on - strand at 5492.462 kb on - strand at 5492.488 kb on + strand at 5492.488 kb on + strand at 5492.488 kb on + strand at 5492.489 kb on - strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.495 kb on + strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.496 kb on - strand at 5492.538 kb on + strand at 5492.840 kb on - strand, within Psyr_4632 at 5493.124 kb on - strand, within Psyr_4632 at 5493.165 kb on - strand, within Psyr_4632 at 5493.165 kb on - strand, within Psyr_4632 at 5493.188 kb on + strand, within Psyr_4632 at 5493.188 kb on + strand, within Psyr_4632 at 5493.188 kb on + strand, within Psyr_4632 at 5493.188 kb on + strand, within Psyr_4632 at 5493.188 kb on + strand, within Psyr_4632 at 5493.189 kb on - strand, within Psyr_4632 at 5493.189 kb on - strand, within Psyr_4632 at 5493.189 kb on - strand, within Psyr_4632 at 5493.311 kb on + strand, within Psyr_4632 at 5493.312 kb on - strand, within Psyr_4632 at 5493.312 kb on - strand, within Psyr_4632 at 5493.328 kb on + strand, within Psyr_4632 at 5493.328 kb on + strand, within Psyr_4632 at 5493.328 kb on + strand, within Psyr_4632 at 5493.329 kb on - strand, within Psyr_4632 at 5493.329 kb on - strand, within Psyr_4632 at 5493.329 kb on - strand, within Psyr_4632 at 5493.329 kb on - strand, within Psyr_4632 at 5493.332 kb on + strand, within Psyr_4632 at 5493.333 kb on - strand, within Psyr_4632 at 5493.333 kb on - strand, within Psyr_4632 at 5493.333 kb on - strand, within Psyr_4632
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Piperic 10 mM remove 5,490,064 - Psyr_4630 0.70 +0.3 5,490,093 + Psyr_4630 0.79 -0.1 5,490,093 + Psyr_4630 0.79 +0.9 5,490,093 + Psyr_4630 0.79 +1.8 5,490,093 + Psyr_4630 0.79 +2.5 5,490,093 + Psyr_4630 0.79 -0.6 5,490,093 + Psyr_4630 0.79 +0.4 5,490,094 - Psyr_4630 0.80 +1.1 5,490,159 + +0.7 5,490,194 + -0.8 5,490,195 - -0.1 5,490,254 + +2.5 5,490,273 + +0.6 5,490,273 + -1.1 5,490,274 - +0.5 5,490,274 - +0.3 5,490,274 - +0.6 5,490,274 - +0.8 5,490,274 - -0.1 5,490,280 - -0.4 5,490,285 - +0.0 5,490,337 - -0.1 5,490,340 + +0.4 5,490,346 + -0.4 5,490,375 + +0.8 5,490,375 + +0.1 5,490,375 + +0.3 5,490,375 + +2.8 5,490,376 - -0.4 5,490,376 - +0.4 5,490,376 - +1.2 5,490,378 + +1.8 5,490,378 + +1.1 5,490,378 + +0.5 5,490,379 - +1.2 5,490,379 - -0.5 5,490,379 - -0.6 5,490,381 + -1.1 5,490,382 - -1.9 5,490,382 - -1.8 5,490,451 + -0.4 5,490,451 + -0.5 5,490,451 + -1.9 5,490,451 + +0.2 5,490,451 + -0.3 5,490,451 + -1.3 5,490,452 - +2.5 5,490,452 - +0.2 5,490,452 - +0.4 5,490,453 + +0.6 5,490,453 + -0.6 5,490,454 - -0.5 5,490,454 - -0.1 5,490,454 - -2.2 5,490,454 - +1.1 5,490,454 - -0.9 5,490,515 + -0.3 5,490,516 - +0.8 5,490,548 + -0.1 5,490,604 + -0.8 5,490,604 + +0.2 5,490,605 - +0.2 5,490,651 + Psyr_4631 0.11 +0.4 5,490,652 - Psyr_4631 0.11 +1.5 5,490,764 + Psyr_4631 0.17 +1.2 5,490,764 + Psyr_4631 0.17 -0.5 5,490,764 + Psyr_4631 0.17 -1.2 5,490,842 + Psyr_4631 0.21 +0.2 5,490,842 + Psyr_4631 0.21 -0.1 5,490,843 - Psyr_4631 0.21 -0.2 5,490,843 - Psyr_4631 0.21 -0.5 5,490,843 - Psyr_4631 0.21 +1.0 5,490,843 - Psyr_4631 0.21 +0.3 5,490,944 + Psyr_4631 0.26 -0.4 5,490,944 + Psyr_4631 0.26 -0.9 5,490,945 - Psyr_4631 0.26 -0.1 5,491,172 + Psyr_4631 0.38 +0.8 5,491,172 + Psyr_4631 0.38 +0.5 5,491,173 - Psyr_4631 0.38 -0.0 5,491,173 - Psyr_4631 0.38 -0.1 5,491,173 - Psyr_4631 0.38 -0.0 5,491,283 + Psyr_4631 0.44 +1.7 5,491,283 + Psyr_4631 0.44 -0.4 5,491,283 + Psyr_4631 0.44 +1.0 5,491,283 + Psyr_4631 0.44 -1.5 5,491,283 + Psyr_4631 0.44 +0.8 5,491,283 + Psyr_4631 0.44 -0.1 5,491,283 + Psyr_4631 0.44 +0.9 5,491,284 - Psyr_4631 0.44 -0.5 5,491,284 - Psyr_4631 0.44 +3.6 5,491,284 - Psyr_4631 0.44 +0.5 5,491,284 - Psyr_4631 0.44 +0.9 5,491,284 - Psyr_4631 0.44 -0.7 5,491,284 - Psyr_4631 0.44 -1.4 5,491,284 - Psyr_4631 0.44 +0.4 5,491,403 - Psyr_4631 0.50 +1.4 5,491,403 - Psyr_4631 0.50 -0.2 5,491,403 - Psyr_4631 0.50 +0.5 5,491,406 + Psyr_4631 0.50 -0.9 5,491,406 + Psyr_4631 0.50 +0.3 5,491,406 + Psyr_4631 0.50 -0.3 5,491,406 + Psyr_4631 0.50 +0.6 5,491,406 + Psyr_4631 0.50 -0.4 5,491,406 + Psyr_4631 0.50 -0.9 5,491,406 + Psyr_4631 0.50 -1.0 5,491,407 - Psyr_4631 0.50 -0.4 5,491,407 - Psyr_4631 0.50 +1.2 5,491,407 - Psyr_4631 0.50 +0.1 5,491,577 + Psyr_4631 0.59 +1.2 5,491,577 + Psyr_4631 0.59 -0.0 5,491,577 + Psyr_4631 0.59 +0.6 5,491,577 + Psyr_4631 0.59 +0.2 5,491,577 + Psyr_4631 0.59 +0.3 5,491,577 + Psyr_4631 0.59 +2.2 5,491,595 + Psyr_4631 0.60 +0.1 5,491,595 + Psyr_4631 0.60 +2.1 5,491,595 + Psyr_4631 0.60 -1.1 5,491,596 - Psyr_4631 0.60 -0.8 5,491,596 - Psyr_4631 0.60 -1.7 5,491,649 + Psyr_4631 0.63 +0.3 5,491,775 + Psyr_4631 0.69 -0.4 5,491,775 + Psyr_4631 0.69 -0.5 5,491,775 + Psyr_4631 0.69 +0.5 5,491,776 - Psyr_4631 0.69 +0.6 5,491,776 - Psyr_4631 0.69 -0.0 5,491,832 + Psyr_4631 0.72 +0.6 5,491,854 - Psyr_4631 0.73 -1.1 5,491,854 - Psyr_4631 0.73 +0.9 5,491,854 - Psyr_4631 0.73 +0.1 5,491,854 - Psyr_4631 0.73 +2.6 5,491,869 - Psyr_4631 0.74 -0.9 5,491,904 + Psyr_4631 0.76 -0.4 5,491,905 - Psyr_4631 0.76 -0.1 5,491,926 - Psyr_4631 0.77 -0.4 5,491,958 + Psyr_4631 0.79 +0.1 5,491,958 + Psyr_4631 0.79 -0.8 5,491,958 + Psyr_4631 0.79 -1.3 5,491,959 - Psyr_4631 0.79 +3.0 5,491,959 - Psyr_4631 0.79 -1.0 5,491,959 - Psyr_4631 0.79 -1.1 5,491,959 - Psyr_4631 0.79 -0.6 5,491,988 + Psyr_4631 0.80 -0.0 5,492,322 + +0.8 5,492,322 + +0.3 5,492,322 + -0.2 5,492,323 - +1.1 5,492,323 - -0.4 5,492,323 - -1.4 5,492,323 - -0.4 5,492,323 - +0.3 5,492,323 - +0.8 5,492,323 - -0.5 5,492,323 - -1.4 5,492,323 - +0.6 5,492,342 + -1.0 5,492,366 + +0.6 5,492,367 - -0.8 5,492,390 - -1.9 5,492,461 + -0.8 5,492,461 + -1.2 5,492,461 + +0.4 5,492,461 + +0.2 5,492,461 + -1.4 5,492,462 - +0.0 5,492,462 - -0.7 5,492,462 - -0.5 5,492,488 + +1.2 5,492,488 + +0.6 5,492,488 + -0.9 5,492,489 - +0.0 5,492,495 + -1.7 5,492,495 + +1.0 5,492,495 + +0.2 5,492,495 + +0.6 5,492,495 + -0.8 5,492,495 + -0.6 5,492,495 + +0.1 5,492,495 + -0.1 5,492,495 + -3.0 5,492,495 + -1.1 5,492,495 + +0.5 5,492,495 + -1.6 5,492,496 - -0.4 5,492,496 - +1.1 5,492,496 - +1.6 5,492,496 - -1.8 5,492,496 - +0.8 5,492,496 - +1.2 5,492,496 - +4.6 5,492,496 - -0.0 5,492,496 - -1.1 5,492,496 - -0.8 5,492,496 - +1.2 5,492,496 - +1.1 5,492,496 - -0.1 5,492,496 - +0.6 5,492,496 - -2.5 5,492,496 - +0.3 5,492,496 - -0.2 5,492,496 - -1.8 5,492,538 + +0.5 5,492,840 - Psyr_4632 0.28 +0.5 5,493,124 - Psyr_4632 0.50 -0.9 5,493,165 - Psyr_4632 0.53 -0.7 5,493,165 - Psyr_4632 0.53 +0.0 5,493,188 + Psyr_4632 0.55 +1.4 5,493,188 + Psyr_4632 0.55 -0.2 5,493,188 + Psyr_4632 0.55 +0.1 5,493,188 + Psyr_4632 0.55 +0.2 5,493,188 + Psyr_4632 0.55 -1.2 5,493,189 - Psyr_4632 0.55 +0.9 5,493,189 - Psyr_4632 0.55 +0.5 5,493,189 - Psyr_4632 0.55 +1.6 5,493,311 + Psyr_4632 0.65 +0.6 5,493,312 - Psyr_4632 0.65 +0.9 5,493,312 - Psyr_4632 0.65 -0.5 5,493,328 + Psyr_4632 0.66 +2.2 5,493,328 + Psyr_4632 0.66 -0.0 5,493,328 + Psyr_4632 0.66 -0.5 5,493,329 - Psyr_4632 0.66 +2.2 5,493,329 - Psyr_4632 0.66 +0.3 5,493,329 - Psyr_4632 0.66 -1.7 5,493,329 - Psyr_4632 0.66 -1.0 5,493,332 + Psyr_4632 0.66 -0.3 5,493,333 - Psyr_4632 0.66 -0.3 5,493,333 - Psyr_4632 0.66 +0.0 5,493,333 - Psyr_4632 0.66 -1.2
Or see this region's nucleotide sequence