Experiment: KB with Piperic 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4059 and Psyr_4060 are separated by 337 nucleotides Psyr_4060 and Psyr_4061 are separated by 180 nucleotides
Psyr_4059: Psyr_4059 - Superoxide dismutase, at 4,841,455 to 4,842,036
_4059
Psyr_4060: Psyr_4060 - diguanylate cyclase/phosphodiesterase, at 4,842,374 to 4,844,491
_4060
Psyr_4061: Psyr_4061 - imelysin, Metallo peptidase, MEROPS family M75, at 4,844,672 to 4,846,048
_4061
Position (kb) 4842
4843
4844
4845 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4841.374 kb on + strand at 4841.374 kb on + strand at 4841.374 kb on + strand at 4841.395 kb on + strand at 4841.395 kb on + strand at 4841.395 kb on + strand at 4842.064 kb on - strand at 4842.188 kb on + strand at 4842.189 kb on - strand at 4842.189 kb on - strand at 4842.197 kb on + strand at 4842.197 kb on + strand at 4842.197 kb on + strand at 4842.198 kb on - strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.234 kb on + strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.235 kb on - strand at 4842.249 kb on + strand at 4842.249 kb on + strand at 4842.249 kb on + strand at 4842.249 kb on + strand at 4842.250 kb on - strand at 4842.250 kb on - strand at 4842.250 kb on - strand at 4842.250 kb on - strand at 4842.250 kb on - strand at 4842.257 kb on + strand at 4842.257 kb on + strand at 4842.257 kb on + strand at 4842.258 kb on - strand at 4842.258 kb on - strand at 4842.276 kb on + strand at 4842.280 kb on + strand at 4842.280 kb on + strand at 4842.281 kb on - strand at 4842.281 kb on - strand at 4842.281 kb on - strand at 4842.408 kb on + strand at 4842.427 kb on + strand at 4842.427 kb on + strand at 4842.427 kb on + strand at 4842.428 kb on - strand at 4842.428 kb on - strand at 4842.428 kb on - strand at 4842.428 kb on - strand at 4842.822 kb on + strand, within Psyr_4060 at 4842.836 kb on + strand, within Psyr_4060 at 4842.836 kb on + strand, within Psyr_4060 at 4842.836 kb on + strand, within Psyr_4060 at 4842.837 kb on - strand, within Psyr_4060 at 4842.845 kb on + strand, within Psyr_4060 at 4842.846 kb on - strand, within Psyr_4060 at 4842.846 kb on - strand, within Psyr_4060 at 4842.846 kb on - strand, within Psyr_4060 at 4842.848 kb on + strand, within Psyr_4060 at 4842.848 kb on + strand, within Psyr_4060 at 4842.849 kb on - strand, within Psyr_4060 at 4842.885 kb on - strand, within Psyr_4060 at 4842.966 kb on - strand, within Psyr_4060 at 4842.974 kb on + strand, within Psyr_4060 at 4843.148 kb on + strand, within Psyr_4060 at 4843.148 kb on + strand, within Psyr_4060 at 4843.148 kb on + strand, within Psyr_4060 at 4843.148 kb on + strand, within Psyr_4060 at 4843.148 kb on + strand, within Psyr_4060 at 4843.148 kb on + strand, within Psyr_4060 at 4843.148 kb on + strand, within Psyr_4060 at 4843.149 kb on - strand, within Psyr_4060 at 4843.149 kb on - strand, within Psyr_4060 at 4843.149 kb on - strand, within Psyr_4060 at 4843.149 kb on - strand, within Psyr_4060 at 4843.149 kb on - strand, within Psyr_4060 at 4843.341 kb on - strand, within Psyr_4060 at 4843.359 kb on + strand, within Psyr_4060 at 4843.359 kb on + strand, within Psyr_4060 at 4843.359 kb on + strand, within Psyr_4060 at 4843.359 kb on + strand, within Psyr_4060 at 4843.360 kb on - strand, within Psyr_4060 at 4843.398 kb on + strand, within Psyr_4060 at 4843.399 kb on - strand, within Psyr_4060 at 4843.399 kb on - strand, within Psyr_4060 at 4843.469 kb on + strand, within Psyr_4060 at 4843.470 kb on - strand, within Psyr_4060 at 4843.470 kb on - strand, within Psyr_4060 at 4843.670 kb on + strand, within Psyr_4060 at 4843.670 kb on + strand, within Psyr_4060 at 4843.670 kb on + strand, within Psyr_4060 at 4843.670 kb on + strand, within Psyr_4060 at 4843.670 kb on + strand, within Psyr_4060 at 4843.670 kb on + strand, within Psyr_4060 at 4843.671 kb on - strand, within Psyr_4060 at 4843.671 kb on - strand, within Psyr_4060 at 4843.671 kb on - strand, within Psyr_4060 at 4843.754 kb on + strand, within Psyr_4060 at 4843.763 kb on + strand, within Psyr_4060 at 4843.763 kb on + strand, within Psyr_4060 at 4843.764 kb on - strand, within Psyr_4060 at 4843.764 kb on - strand, within Psyr_4060 at 4843.781 kb on + strand, within Psyr_4060 at 4843.795 kb on + strand, within Psyr_4060 at 4843.796 kb on - strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.860 kb on + strand, within Psyr_4060 at 4843.861 kb on - strand, within Psyr_4060 at 4843.861 kb on - strand, within Psyr_4060 at 4843.861 kb on - strand, within Psyr_4060 at 4844.051 kb on + strand, within Psyr_4060 at 4844.051 kb on + strand, within Psyr_4060 at 4844.052 kb on - strand, within Psyr_4060 at 4844.204 kb on + strand, within Psyr_4060 at 4844.204 kb on + strand, within Psyr_4060 at 4844.287 kb on + strand at 4844.288 kb on - strand at 4844.372 kb on + strand at 4844.372 kb on + strand at 4844.372 kb on + strand at 4844.372 kb on + strand at 4844.372 kb on + strand at 4844.372 kb on + strand at 4844.373 kb on - strand at 4844.373 kb on - strand at 4844.373 kb on - strand at 4844.373 kb on - strand at 4844.373 kb on - strand at 4844.373 kb on - strand at 4844.373 kb on - strand at 4844.414 kb on + strand at 4844.414 kb on + strand at 4844.415 kb on - strand at 4844.451 kb on - strand at 4844.540 kb on + strand at 4844.540 kb on + strand at 4844.541 kb on - strand at 4844.541 kb on - strand at 4844.612 kb on + strand at 4844.613 kb on - strand at 4844.681 kb on - strand at 4844.894 kb on + strand, within Psyr_4061 at 4844.894 kb on + strand, within Psyr_4061 at 4844.895 kb on - strand, within Psyr_4061 at 4844.895 kb on - strand, within Psyr_4061 at 4844.895 kb on - strand, within Psyr_4061 at 4845.039 kb on - strand, within Psyr_4061 at 4845.039 kb on - strand, within Psyr_4061 at 4845.134 kb on + strand, within Psyr_4061 at 4845.134 kb on + strand, within Psyr_4061 at 4845.134 kb on + strand, within Psyr_4061 at 4845.134 kb on + strand, within Psyr_4061 at 4845.134 kb on + strand, within Psyr_4061 at 4845.135 kb on - strand, within Psyr_4061 at 4845.135 kb on - strand, within Psyr_4061 at 4845.135 kb on - strand, within Psyr_4061 at 4845.135 kb on - strand, within Psyr_4061 at 4845.135 kb on - strand, within Psyr_4061 at 4845.234 kb on + strand, within Psyr_4061 at 4845.234 kb on + strand, within Psyr_4061 at 4845.235 kb on - strand, within Psyr_4061 at 4845.235 kb on - strand, within Psyr_4061 at 4845.389 kb on + strand, within Psyr_4061 at 4845.390 kb on - strand, within Psyr_4061 at 4845.390 kb on - strand, within Psyr_4061 at 4845.441 kb on - strand, within Psyr_4061 at 4845.441 kb on - strand, within Psyr_4061
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Piperic 10 mM remove 4,841,374 + -1.5 4,841,374 + +4.1 4,841,374 + +0.1 4,841,395 + +2.3 4,841,395 + -0.2 4,841,395 + -1.0 4,842,064 - -0.1 4,842,188 + +0.1 4,842,189 - +0.2 4,842,189 - +0.1 4,842,197 + -0.1 4,842,197 + -0.1 4,842,197 + +0.4 4,842,198 - -0.8 4,842,234 + +0.3 4,842,234 + -0.9 4,842,234 + +0.2 4,842,234 + -1.9 4,842,234 + -1.4 4,842,234 + -1.1 4,842,234 + +0.4 4,842,235 - -1.9 4,842,235 - -0.4 4,842,235 - -1.5 4,842,235 - -0.7 4,842,235 - -0.7 4,842,235 - +0.0 4,842,235 - +2.5 4,842,235 - -0.5 4,842,235 - +1.4 4,842,235 - +0.5 4,842,249 + +1.2 4,842,249 + -1.3 4,842,249 + +0.1 4,842,249 + -0.6 4,842,250 - -0.6 4,842,250 - -0.5 4,842,250 - +0.3 4,842,250 - +0.1 4,842,250 - +0.3 4,842,257 + +1.0 4,842,257 + +0.4 4,842,257 + -1.1 4,842,258 - -0.7 4,842,258 - -0.5 4,842,276 + -1.4 4,842,280 + -2.9 4,842,280 + -1.6 4,842,281 - -1.2 4,842,281 - -2.4 4,842,281 - -0.2 4,842,408 + +2.0 4,842,427 + -1.5 4,842,427 + -0.9 4,842,427 + +1.4 4,842,428 - +0.0 4,842,428 - -0.1 4,842,428 - +0.0 4,842,428 - -0.1 4,842,822 + Psyr_4060 0.21 +0.4 4,842,836 + Psyr_4060 0.22 +0.6 4,842,836 + Psyr_4060 0.22 -0.1 4,842,836 + Psyr_4060 0.22 -0.3 4,842,837 - Psyr_4060 0.22 +0.8 4,842,845 + Psyr_4060 0.22 +3.7 4,842,846 - Psyr_4060 0.22 +0.5 4,842,846 - Psyr_4060 0.22 -0.9 4,842,846 - Psyr_4060 0.22 +0.5 4,842,848 + Psyr_4060 0.22 -1.0 4,842,848 + Psyr_4060 0.22 +0.2 4,842,849 - Psyr_4060 0.22 -0.7 4,842,885 - Psyr_4060 0.24 +2.1 4,842,966 - Psyr_4060 0.28 +2.0 4,842,974 + Psyr_4060 0.28 +0.5 4,843,148 + Psyr_4060 0.37 +0.0 4,843,148 + Psyr_4060 0.37 +0.5 4,843,148 + Psyr_4060 0.37 -2.0 4,843,148 + Psyr_4060 0.37 -0.4 4,843,148 + Psyr_4060 0.37 +1.1 4,843,148 + Psyr_4060 0.37 +0.8 4,843,148 + Psyr_4060 0.37 +0.6 4,843,149 - Psyr_4060 0.37 +0.1 4,843,149 - Psyr_4060 0.37 -0.7 4,843,149 - Psyr_4060 0.37 -1.5 4,843,149 - Psyr_4060 0.37 -0.6 4,843,149 - Psyr_4060 0.37 -0.2 4,843,341 - Psyr_4060 0.46 -0.1 4,843,359 + Psyr_4060 0.47 -0.5 4,843,359 + Psyr_4060 0.47 +0.4 4,843,359 + Psyr_4060 0.47 +0.1 4,843,359 + Psyr_4060 0.47 -1.1 4,843,360 - Psyr_4060 0.47 +0.7 4,843,398 + Psyr_4060 0.48 -0.3 4,843,399 - Psyr_4060 0.48 -0.2 4,843,399 - Psyr_4060 0.48 +1.2 4,843,469 + Psyr_4060 0.52 +0.6 4,843,470 - Psyr_4060 0.52 -0.6 4,843,470 - Psyr_4060 0.52 -0.4 4,843,670 + Psyr_4060 0.61 +2.1 4,843,670 + Psyr_4060 0.61 -1.6 4,843,670 + Psyr_4060 0.61 -0.7 4,843,670 + Psyr_4060 0.61 -0.6 4,843,670 + Psyr_4060 0.61 +0.1 4,843,670 + Psyr_4060 0.61 +1.1 4,843,671 - Psyr_4060 0.61 -0.3 4,843,671 - Psyr_4060 0.61 -0.1 4,843,671 - Psyr_4060 0.61 +1.2 4,843,754 + Psyr_4060 0.65 -0.5 4,843,763 + Psyr_4060 0.66 +0.4 4,843,763 + Psyr_4060 0.66 +0.7 4,843,764 - Psyr_4060 0.66 -0.2 4,843,764 - Psyr_4060 0.66 +2.7 4,843,781 + Psyr_4060 0.66 -0.1 4,843,795 + Psyr_4060 0.67 -0.9 4,843,796 - Psyr_4060 0.67 +0.1 4,843,860 + Psyr_4060 0.70 +3.4 4,843,860 + Psyr_4060 0.70 -2.0 4,843,860 + Psyr_4060 0.70 +0.8 4,843,860 + Psyr_4060 0.70 -2.1 4,843,860 + Psyr_4060 0.70 -0.2 4,843,860 + Psyr_4060 0.70 -1.0 4,843,861 - Psyr_4060 0.70 +1.5 4,843,861 - Psyr_4060 0.70 -0.2 4,843,861 - Psyr_4060 0.70 -1.4 4,844,051 + Psyr_4060 0.79 +1.8 4,844,051 + Psyr_4060 0.79 -0.3 4,844,052 - Psyr_4060 0.79 +2.7 4,844,204 + Psyr_4060 0.86 +1.0 4,844,204 + Psyr_4060 0.86 +0.2 4,844,287 + -0.3 4,844,288 - -0.1 4,844,372 + -0.5 4,844,372 + +0.2 4,844,372 + -0.6 4,844,372 + +3.9 4,844,372 + +0.5 4,844,372 + -2.7 4,844,373 - -0.6 4,844,373 - +2.0 4,844,373 - -0.7 4,844,373 - +1.4 4,844,373 - +0.4 4,844,373 - -1.3 4,844,373 - +0.1 4,844,414 + -1.5 4,844,414 + -0.4 4,844,415 - -1.2 4,844,451 - +1.0 4,844,540 + -0.4 4,844,540 + -0.4 4,844,541 - +1.8 4,844,541 - -0.0 4,844,612 + +0.8 4,844,613 - +1.1 4,844,681 - -0.2 4,844,894 + Psyr_4061 0.16 -0.1 4,844,894 + Psyr_4061 0.16 +0.5 4,844,895 - Psyr_4061 0.16 -1.1 4,844,895 - Psyr_4061 0.16 -1.0 4,844,895 - Psyr_4061 0.16 +0.1 4,845,039 - Psyr_4061 0.27 +0.1 4,845,039 - Psyr_4061 0.27 +0.9 4,845,134 + Psyr_4061 0.34 -0.1 4,845,134 + Psyr_4061 0.34 -1.5 4,845,134 + Psyr_4061 0.34 +0.3 4,845,134 + Psyr_4061 0.34 +0.2 4,845,134 + Psyr_4061 0.34 +0.7 4,845,135 - Psyr_4061 0.34 +2.1 4,845,135 - Psyr_4061 0.34 +0.1 4,845,135 - Psyr_4061 0.34 +0.1 4,845,135 - Psyr_4061 0.34 +0.5 4,845,135 - Psyr_4061 0.34 -1.3 4,845,234 + Psyr_4061 0.41 +0.4 4,845,234 + Psyr_4061 0.41 -1.0 4,845,235 - Psyr_4061 0.41 -1.1 4,845,235 - Psyr_4061 0.41 -1.1 4,845,389 + Psyr_4061 0.52 +0.8 4,845,390 - Psyr_4061 0.52 +0.6 4,845,390 - Psyr_4061 0.52 +1.5 4,845,441 - Psyr_4061 0.56 +2.1 4,845,441 - Psyr_4061 0.56 -1.0
Or see this region's nucleotide sequence