Experiment: KB with Piperic 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0088 and Psyr_0089 are separated by 750 nucleotides Psyr_0089 and Psyr_0090 are separated by 156 nucleotides
Psyr_0088: Psyr_0088 - PAS:GGDEF, at 95,185 to 96,192
_0088
Psyr_0089: Psyr_0089 - Response regulator receiver, at 96,943 to 98,331
_0089
Psyr_0090: Psyr_0090 - 4-aminobutyrate aminotransferase apoenzyme, at 98,488 to 99,768
_0090
Position (kb) 96
97
98
99 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 96.148 kb on + strand at 96.148 kb on + strand at 96.148 kb on + strand at 96.148 kb on + strand at 96.148 kb on + strand at 96.148 kb on + strand at 96.149 kb on - strand at 96.149 kb on - strand at 96.149 kb on - strand at 96.209 kb on + strand at 96.209 kb on + strand at 96.209 kb on + strand at 96.209 kb on + strand at 96.210 kb on - strand at 96.210 kb on - strand at 96.257 kb on + strand at 96.331 kb on - strand at 96.331 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.333 kb on - strand at 96.357 kb on + strand at 96.357 kb on + strand at 96.438 kb on + strand at 96.440 kb on + strand at 96.440 kb on + strand at 96.441 kb on - strand at 96.441 kb on - strand at 96.441 kb on - strand at 96.441 kb on - strand at 96.465 kb on + strand at 96.548 kb on + strand at 96.548 kb on + strand at 96.548 kb on + strand at 96.548 kb on + strand at 96.595 kb on + strand at 96.595 kb on + strand at 96.595 kb on + strand at 96.596 kb on - strand at 96.596 kb on - strand at 96.596 kb on - strand at 96.625 kb on + strand at 96.625 kb on + strand at 96.625 kb on + strand at 96.655 kb on - strand at 96.681 kb on + strand at 96.703 kb on + strand at 96.704 kb on - strand at 96.733 kb on + strand at 96.763 kb on - strand at 96.764 kb on + strand at 96.765 kb on - strand at 96.789 kb on + strand at 96.789 kb on + strand at 96.790 kb on - strand at 96.790 kb on - strand at 96.790 kb on - strand at 96.842 kb on - strand at 96.897 kb on + strand at 96.905 kb on + strand at 96.912 kb on + strand at 97.262 kb on + strand, within Psyr_0089 at 97.262 kb on + strand, within Psyr_0089 at 97.262 kb on + strand, within Psyr_0089 at 97.262 kb on + strand, within Psyr_0089 at 97.262 kb on + strand, within Psyr_0089 at 97.262 kb on + strand, within Psyr_0089 at 97.262 kb on + strand, within Psyr_0089 at 97.262 kb on + strand, within Psyr_0089 at 97.262 kb on + strand, within Psyr_0089 at 97.262 kb on + strand, within Psyr_0089 at 97.262 kb on + strand, within Psyr_0089 at 97.263 kb on - strand, within Psyr_0089 at 97.263 kb on - strand, within Psyr_0089 at 97.263 kb on - strand, within Psyr_0089 at 97.263 kb on - strand, within Psyr_0089 at 97.263 kb on - strand, within Psyr_0089 at 97.263 kb on - strand, within Psyr_0089 at 97.263 kb on - strand, within Psyr_0089 at 97.273 kb on - strand, within Psyr_0089 at 97.277 kb on + strand, within Psyr_0089 at 97.277 kb on + strand, within Psyr_0089 at 97.277 kb on + strand, within Psyr_0089 at 97.278 kb on - strand, within Psyr_0089 at 97.278 kb on - strand, within Psyr_0089 at 97.278 kb on - strand, within Psyr_0089 at 97.278 kb on - strand, within Psyr_0089 at 97.278 kb on - strand, within Psyr_0089 at 97.278 kb on - strand, within Psyr_0089 at 97.278 kb on - strand, within Psyr_0089 at 97.283 kb on + strand, within Psyr_0089 at 97.283 kb on + strand, within Psyr_0089 at 97.284 kb on - strand, within Psyr_0089 at 97.284 kb on - strand, within Psyr_0089 at 97.284 kb on - strand, within Psyr_0089 at 97.284 kb on - strand, within Psyr_0089 at 97.361 kb on + strand, within Psyr_0089 at 97.362 kb on - strand, within Psyr_0089 at 97.477 kb on - strand, within Psyr_0089 at 97.527 kb on - strand, within Psyr_0089 at 97.603 kb on - strand, within Psyr_0089 at 97.730 kb on - strand, within Psyr_0089 at 97.997 kb on + strand, within Psyr_0089 at 98.052 kb on + strand, within Psyr_0089 at 98.053 kb on - strand, within Psyr_0089 at 98.317 kb on + strand at 98.317 kb on + strand at 98.317 kb on + strand at 98.317 kb on + strand at 98.318 kb on - strand at 98.399 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.588 kb on + strand at 98.589 kb on - strand at 98.873 kb on + strand, within Psyr_0090 at 98.873 kb on + strand, within Psyr_0090 at 98.873 kb on + strand, within Psyr_0090 at 98.874 kb on - strand, within Psyr_0090 at 98.874 kb on - strand, within Psyr_0090 at 98.874 kb on - strand, within Psyr_0090 at 98.874 kb on - strand, within Psyr_0090 at 98.912 kb on + strand, within Psyr_0090 at 98.912 kb on + strand, within Psyr_0090 at 98.913 kb on - strand, within Psyr_0090 at 98.913 kb on - strand, within Psyr_0090 at 98.913 kb on - strand, within Psyr_0090 at 98.913 kb on - strand, within Psyr_0090 at 98.913 kb on - strand, within Psyr_0090 at 98.913 kb on - strand, within Psyr_0090 at 98.913 kb on - strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.122 kb on + strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.123 kb on - strand, within Psyr_0090 at 99.270 kb on + strand, within Psyr_0090 at 99.270 kb on + strand, within Psyr_0090
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Piperic 10 mM remove 96,148 + +0.3 96,148 + -0.5 96,148 + -0.4 96,148 + +0.3 96,148 + -0.1 96,148 + -0.2 96,149 - -0.6 96,149 - +0.1 96,149 - -0.8 96,209 + -0.4 96,209 + +1.8 96,209 + +1.3 96,209 + -0.7 96,210 - -0.2 96,210 - -0.3 96,257 + -0.9 96,331 - -1.5 96,331 - -0.5 96,333 - -1.6 96,333 - +2.4 96,333 - +2.1 96,333 - +0.5 96,333 - +2.0 96,333 - -1.7 96,333 - -0.2 96,333 - -1.0 96,333 - +1.1 96,333 - +0.1 96,333 - +0.2 96,333 - -1.5 96,333 - +0.9 96,333 - -0.5 96,357 + +0.0 96,357 + +0.1 96,438 + -0.3 96,440 + -0.2 96,440 + +1.3 96,441 - +0.6 96,441 - -0.6 96,441 - -0.2 96,441 - +0.8 96,465 + -0.7 96,548 + +0.2 96,548 + -1.2 96,548 + -0.5 96,548 + +0.0 96,595 + -0.7 96,595 + -0.6 96,595 + +0.2 96,596 - -0.2 96,596 - -0.4 96,596 - -1.3 96,625 + +0.2 96,625 + +1.2 96,625 + -0.2 96,655 - -0.5 96,681 + -0.5 96,703 + -1.5 96,704 - -1.2 96,733 + -0.6 96,763 - +0.6 96,764 + -0.6 96,765 - +1.2 96,789 + +1.0 96,789 + -1.1 96,790 - -0.8 96,790 - -1.8 96,790 - -0.1 96,842 - +0.3 96,897 + -0.7 96,905 + -0.6 96,912 + -0.2 97,262 + Psyr_0089 0.23 +0.5 97,262 + Psyr_0089 0.23 +0.3 97,262 + Psyr_0089 0.23 +0.4 97,262 + Psyr_0089 0.23 -0.5 97,262 + Psyr_0089 0.23 +1.3 97,262 + Psyr_0089 0.23 -0.3 97,262 + Psyr_0089 0.23 -0.3 97,262 + Psyr_0089 0.23 -1.1 97,262 + Psyr_0089 0.23 +0.3 97,262 + Psyr_0089 0.23 +0.0 97,262 + Psyr_0089 0.23 -0.6 97,263 - Psyr_0089 0.23 -0.6 97,263 - Psyr_0089 0.23 +0.6 97,263 - Psyr_0089 0.23 +0.4 97,263 - Psyr_0089 0.23 +0.5 97,263 - Psyr_0089 0.23 -1.0 97,263 - Psyr_0089 0.23 -0.2 97,263 - Psyr_0089 0.23 -0.4 97,273 - Psyr_0089 0.24 -0.2 97,277 + Psyr_0089 0.24 +0.9 97,277 + Psyr_0089 0.24 -0.2 97,277 + Psyr_0089 0.24 +2.3 97,278 - Psyr_0089 0.24 +0.3 97,278 - Psyr_0089 0.24 +1.0 97,278 - Psyr_0089 0.24 +0.1 97,278 - Psyr_0089 0.24 -1.0 97,278 - Psyr_0089 0.24 +0.7 97,278 - Psyr_0089 0.24 +0.2 97,278 - Psyr_0089 0.24 +0.0 97,283 + Psyr_0089 0.24 -0.7 97,283 + Psyr_0089 0.24 -2.9 97,284 - Psyr_0089 0.25 -0.3 97,284 - Psyr_0089 0.25 +0.3 97,284 - Psyr_0089 0.25 -0.5 97,284 - Psyr_0089 0.25 -0.1 97,361 + Psyr_0089 0.30 -0.6 97,362 - Psyr_0089 0.30 +0.4 97,477 - Psyr_0089 0.38 -0.3 97,527 - Psyr_0089 0.42 +0.3 97,603 - Psyr_0089 0.48 +0.5 97,730 - Psyr_0089 0.57 -0.2 97,997 + Psyr_0089 0.76 +1.3 98,052 + Psyr_0089 0.80 -0.4 98,053 - Psyr_0089 0.80 +1.0 98,317 + +0.2 98,317 + -0.3 98,317 + -1.4 98,317 + -0.4 98,318 - +1.3 98,399 + +1.3 98,588 + -1.5 98,588 + -0.7 98,588 + +2.9 98,589 - +0.6 98,873 + Psyr_0090 0.30 +2.2 98,873 + Psyr_0090 0.30 -1.3 98,873 + Psyr_0090 0.30 -0.7 98,874 - Psyr_0090 0.30 +0.2 98,874 - Psyr_0090 0.30 +1.3 98,874 - Psyr_0090 0.30 -1.7 98,874 - Psyr_0090 0.30 +0.8 98,912 + Psyr_0090 0.33 -0.5 98,912 + Psyr_0090 0.33 +0.3 98,913 - Psyr_0090 0.33 +1.2 98,913 - Psyr_0090 0.33 -1.1 98,913 - Psyr_0090 0.33 -0.8 98,913 - Psyr_0090 0.33 -1.2 98,913 - Psyr_0090 0.33 -0.4 98,913 - Psyr_0090 0.33 +1.9 98,913 - Psyr_0090 0.33 +1.2 99,122 + Psyr_0090 0.49 +0.0 99,122 + Psyr_0090 0.49 +0.7 99,122 + Psyr_0090 0.49 -0.0 99,122 + Psyr_0090 0.49 -0.5 99,122 + Psyr_0090 0.49 -0.8 99,123 - Psyr_0090 0.50 -0.7 99,123 - Psyr_0090 0.50 +0.3 99,123 - Psyr_0090 0.50 -1.6 99,123 - Psyr_0090 0.50 +1.8 99,270 + Psyr_0090 0.61 -0.2 99,270 + Psyr_0090 0.61 +1.6
Or see this region's nucleotide sequence