Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4695

Experiment: KB with Palmatine chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4693 and Psyr_4694 overlap by 4 nucleotidesPsyr_4694 and Psyr_4695 overlap by 1 nucleotidesPsyr_4695 and Psyr_4696 overlap by 17 nucleotides Psyr_4693: Psyr_4693 - Binding-protein-dependent transport systems inner membrane component, at 5,561,782 to 5,562,576 _4693 Psyr_4694: Psyr_4694 - Binding-protein-dependent transport systems inner membrane component, at 5,562,573 to 5,563,442 _4694 Psyr_4695: Psyr_4695 - extracellular solute-binding protein, family 1, at 5,563,442 to 5,564,443 _4695 Psyr_4696: Psyr_4696 - transcriptional regulator, LacI family, at 5,564,427 to 5,565,446 _4696 Position (kb) 5563 5564 5565Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5562.594 kb on - strandat 5562.602 kb on + strandat 5562.602 kb on + strandat 5562.603 kb on - strandat 5562.603 kb on - strandat 5562.603 kb on - strandat 5562.682 kb on + strand, within Psyr_4694at 5562.683 kb on - strand, within Psyr_4694at 5562.700 kb on + strand, within Psyr_4694at 5562.700 kb on + strand, within Psyr_4694at 5562.701 kb on - strand, within Psyr_4694at 5562.701 kb on - strand, within Psyr_4694at 5562.701 kb on - strand, within Psyr_4694at 5562.701 kb on - strand, within Psyr_4694at 5562.943 kb on + strand, within Psyr_4694at 5562.943 kb on + strand, within Psyr_4694at 5562.943 kb on + strand, within Psyr_4694at 5562.944 kb on - strand, within Psyr_4694at 5562.944 kb on - strand, within Psyr_4694at 5562.976 kb on + strand, within Psyr_4694at 5563.232 kb on - strand, within Psyr_4694at 5563.281 kb on - strand, within Psyr_4694at 5563.338 kb on + strand, within Psyr_4694at 5563.443 kb on + strandat 5563.443 kb on + strandat 5563.443 kb on + strandat 5563.443 kb on + strandat 5563.443 kb on + strandat 5563.443 kb on + strandat 5563.443 kb on + strandat 5563.444 kb on - strandat 5563.444 kb on - strandat 5563.444 kb on - strandat 5563.444 kb on - strandat 5563.444 kb on - strandat 5563.444 kb on - strandat 5563.444 kb on - strandat 5563.444 kb on - strandat 5563.756 kb on - strand, within Psyr_4695at 5563.756 kb on - strand, within Psyr_4695at 5563.782 kb on + strand, within Psyr_4695at 5563.782 kb on + strand, within Psyr_4695at 5563.782 kb on + strand, within Psyr_4695at 5563.825 kb on - strand, within Psyr_4695at 5563.876 kb on - strand, within Psyr_4695at 5563.876 kb on - strand, within Psyr_4695at 5563.876 kb on - strand, within Psyr_4695at 5563.944 kb on + strand, within Psyr_4695at 5563.944 kb on + strand, within Psyr_4695at 5563.944 kb on + strand, within Psyr_4695at 5563.944 kb on + strand, within Psyr_4695at 5563.992 kb on + strand, within Psyr_4695at 5564.151 kb on + strand, within Psyr_4695at 5564.151 kb on + strand, within Psyr_4695at 5564.151 kb on + strand, within Psyr_4695at 5564.151 kb on + strand, within Psyr_4695at 5564.151 kb on + strand, within Psyr_4695at 5564.151 kb on + strand, within Psyr_4695at 5564.152 kb on - strand, within Psyr_4695at 5564.152 kb on - strand, within Psyr_4695at 5564.152 kb on - strand, within Psyr_4695at 5564.152 kb on - strand, within Psyr_4695at 5564.152 kb on - strand, within Psyr_4695at 5564.152 kb on - strand, within Psyr_4695at 5564.202 kb on + strand, within Psyr_4695at 5564.205 kb on + strand, within Psyr_4695at 5564.205 kb on + strand, within Psyr_4695at 5564.205 kb on + strand, within Psyr_4695at 5564.205 kb on + strand, within Psyr_4695at 5564.206 kb on - strand, within Psyr_4695at 5564.206 kb on - strand, within Psyr_4695at 5564.206 kb on - strand, within Psyr_4695at 5564.206 kb on - strand, within Psyr_4695at 5564.206 kb on - strand, within Psyr_4695at 5564.206 kb on - strand, within Psyr_4695at 5564.206 kb on - strand, within Psyr_4695at 5564.358 kb on + strandat 5564.359 kb on - strandat 5564.359 kb on - strandat 5564.538 kb on + strand, within Psyr_4696at 5564.538 kb on + strand, within Psyr_4696at 5564.539 kb on - strand, within Psyr_4696at 5564.539 kb on - strand, within Psyr_4696at 5564.751 kb on + strand, within Psyr_4696at 5564.751 kb on + strand, within Psyr_4696at 5564.751 kb on + strand, within Psyr_4696at 5564.786 kb on + strand, within Psyr_4696at 5564.786 kb on + strand, within Psyr_4696at 5564.786 kb on + strand, within Psyr_4696at 5564.786 kb on + strand, within Psyr_4696at 5564.787 kb on - strand, within Psyr_4696at 5564.787 kb on - strand, within Psyr_4696at 5564.787 kb on - strand, within Psyr_4696at 5564.787 kb on - strand, within Psyr_4696at 5564.787 kb on - strand, within Psyr_4696at 5564.787 kb on - strand, within Psyr_4696at 5564.986 kb on + strand, within Psyr_4696at 5565.151 kb on + strand, within Psyr_4696at 5565.151 kb on + strand, within Psyr_4696at 5565.178 kb on + strand, within Psyr_4696at 5565.179 kb on - strand, within Psyr_4696at 5565.179 kb on - strand, within Psyr_4696at 5565.366 kb on + strandat 5565.366 kb on + strandat 5565.367 kb on - strandat 5565.367 kb on - strandat 5565.426 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM
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5,562,594 - +1.3
5,562,602 + -1.7
5,562,602 + -0.7
5,562,603 - +0.3
5,562,603 - +0.0
5,562,603 - -0.5
5,562,682 + Psyr_4694 0.13 -0.4
5,562,683 - Psyr_4694 0.13 -0.8
5,562,700 + Psyr_4694 0.15 -1.3
5,562,700 + Psyr_4694 0.15 +0.0
5,562,701 - Psyr_4694 0.15 +1.9
5,562,701 - Psyr_4694 0.15 -0.2
5,562,701 - Psyr_4694 0.15 -0.6
5,562,701 - Psyr_4694 0.15 +0.7
5,562,943 + Psyr_4694 0.43 -2.1
5,562,943 + Psyr_4694 0.43 -0.9
5,562,943 + Psyr_4694 0.43 -2.7
5,562,944 - Psyr_4694 0.43 -0.9
5,562,944 - Psyr_4694 0.43 -0.2
5,562,976 + Psyr_4694 0.46 -0.5
5,563,232 - Psyr_4694 0.76 -1.3
5,563,281 - Psyr_4694 0.81 -0.7
5,563,338 + Psyr_4694 0.88 -0.5
5,563,443 + -0.8
5,563,443 + +1.1
5,563,443 + -1.5
5,563,443 + +0.2
5,563,443 + +0.5
5,563,443 + +1.3
5,563,443 + -1.2
5,563,444 - +0.6
5,563,444 - -2.3
5,563,444 - +0.4
5,563,444 - -0.2
5,563,444 - -1.0
5,563,444 - -1.1
5,563,444 - -0.8
5,563,444 - -0.2
5,563,756 - Psyr_4695 0.31 -0.5
5,563,756 - Psyr_4695 0.31 +0.1
5,563,782 + Psyr_4695 0.34 -1.5
5,563,782 + Psyr_4695 0.34 +1.0
5,563,782 + Psyr_4695 0.34 -0.7
5,563,825 - Psyr_4695 0.38 +1.0
5,563,876 - Psyr_4695 0.43 -0.1
5,563,876 - Psyr_4695 0.43 +0.3
5,563,876 - Psyr_4695 0.43 +0.2
5,563,944 + Psyr_4695 0.50 -0.0
5,563,944 + Psyr_4695 0.50 +0.2
5,563,944 + Psyr_4695 0.50 -0.2
5,563,944 + Psyr_4695 0.50 -0.0
5,563,992 + Psyr_4695 0.55 -0.4
5,564,151 + Psyr_4695 0.71 -2.9
5,564,151 + Psyr_4695 0.71 +0.6
5,564,151 + Psyr_4695 0.71 +0.7
5,564,151 + Psyr_4695 0.71 +0.5
5,564,151 + Psyr_4695 0.71 -0.3
5,564,151 + Psyr_4695 0.71 +2.4
5,564,152 - Psyr_4695 0.71 +0.5
5,564,152 - Psyr_4695 0.71 +1.2
5,564,152 - Psyr_4695 0.71 +0.8
5,564,152 - Psyr_4695 0.71 -0.1
5,564,152 - Psyr_4695 0.71 +1.4
5,564,152 - Psyr_4695 0.71 -0.3
5,564,202 + Psyr_4695 0.76 +0.5
5,564,205 + Psyr_4695 0.76 -0.0
5,564,205 + Psyr_4695 0.76 -0.6
5,564,205 + Psyr_4695 0.76 -0.5
5,564,205 + Psyr_4695 0.76 -0.7
5,564,206 - Psyr_4695 0.76 +0.7
5,564,206 - Psyr_4695 0.76 +0.9
5,564,206 - Psyr_4695 0.76 +0.6
5,564,206 - Psyr_4695 0.76 -0.3
5,564,206 - Psyr_4695 0.76 -1.5
5,564,206 - Psyr_4695 0.76 -0.6
5,564,206 - Psyr_4695 0.76 +1.9
5,564,358 + -3.1
5,564,359 - -0.7
5,564,359 - -0.8
5,564,538 + Psyr_4696 0.11 +4.1
5,564,538 + Psyr_4696 0.11 +1.3
5,564,539 - Psyr_4696 0.11 +1.3
5,564,539 - Psyr_4696 0.11 -2.8
5,564,751 + Psyr_4696 0.32 +0.6
5,564,751 + Psyr_4696 0.32 -0.6
5,564,751 + Psyr_4696 0.32 +0.1
5,564,786 + Psyr_4696 0.35 -0.3
5,564,786 + Psyr_4696 0.35 +1.6
5,564,786 + Psyr_4696 0.35 +1.0
5,564,786 + Psyr_4696 0.35 +1.0
5,564,787 - Psyr_4696 0.35 -0.1
5,564,787 - Psyr_4696 0.35 -0.5
5,564,787 - Psyr_4696 0.35 +0.8
5,564,787 - Psyr_4696 0.35 +0.7
5,564,787 - Psyr_4696 0.35 +0.9
5,564,787 - Psyr_4696 0.35 +0.1
5,564,986 + Psyr_4696 0.55 -0.0
5,565,151 + Psyr_4696 0.71 +0.2
5,565,151 + Psyr_4696 0.71 +0.3
5,565,178 + Psyr_4696 0.74 +0.1
5,565,179 - Psyr_4696 0.74 +0.2
5,565,179 - Psyr_4696 0.74 +0.4
5,565,366 + +1.2
5,565,366 + +1.5
5,565,367 - +1.6
5,565,367 - -2.0
5,565,426 + +0.3

Or see this region's nucleotide sequence