Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4273

Experiment: KB with Palmatine chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4271 and Psyr_4272 are separated by 95 nucleotidesPsyr_4272 and Psyr_4273 are separated by 27 nucleotidesPsyr_4273 and Psyr_4274 are separated by 284 nucleotidesPsyr_4274 and Psyr_4275 are separated by 6 nucleotides Psyr_4271: Psyr_4271 - Cobalamin synthesis protein/P47K:Cobalamin synthesis protein/P47K, at 5,095,480 to 5,096,457 _4271 Psyr_4272: Psyr_4272 - Protein of unknown function DUF466, at 5,096,553 to 5,096,750 _4272 Psyr_4273: Psyr_4273 - Carbon starvation protein CstA, at 5,096,778 to 5,098,853 _4273 Psyr_4274: Psyr_4274 - conserved hypothetical protein, at 5,099,138 to 5,099,506 _4274 Psyr_4275: Psyr_4275 - DNA replication and repair protein RadA, at 5,099,513 to 5,100,880 _4275 Position (kb) 5096 5097 5098 5099Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5096.087 kb on + strand, within Psyr_4271at 5096.088 kb on - strand, within Psyr_4271at 5096.088 kb on - strand, within Psyr_4271at 5096.088 kb on - strand, within Psyr_4271at 5096.088 kb on - strand, within Psyr_4271at 5096.088 kb on - strand, within Psyr_4271at 5096.199 kb on + strand, within Psyr_4271at 5096.199 kb on + strand, within Psyr_4271at 5096.217 kb on - strand, within Psyr_4271at 5096.217 kb on - strand, within Psyr_4271at 5096.217 kb on - strand, within Psyr_4271at 5096.284 kb on + strand, within Psyr_4271at 5096.284 kb on + strand, within Psyr_4271at 5096.457 kb on + strandat 5096.457 kb on + strandat 5096.458 kb on - strandat 5096.536 kb on + strandat 5096.620 kb on + strand, within Psyr_4272at 5096.620 kb on + strand, within Psyr_4272at 5096.620 kb on + strand, within Psyr_4272at 5096.620 kb on + strand, within Psyr_4272at 5096.621 kb on - strand, within Psyr_4272at 5096.668 kb on + strand, within Psyr_4272at 5096.668 kb on + strand, within Psyr_4272at 5096.669 kb on - strand, within Psyr_4272at 5096.669 kb on - strand, within Psyr_4272at 5096.669 kb on - strand, within Psyr_4272at 5096.669 kb on - strand, within Psyr_4272at 5096.719 kb on + strand, within Psyr_4272at 5096.720 kb on - strand, within Psyr_4272at 5096.865 kb on - strandat 5096.872 kb on + strandat 5096.872 kb on + strandat 5096.873 kb on - strandat 5096.929 kb on + strandat 5096.929 kb on + strandat 5096.930 kb on - strandat 5097.010 kb on + strand, within Psyr_4273at 5097.010 kb on + strand, within Psyr_4273at 5097.010 kb on + strand, within Psyr_4273at 5097.011 kb on - strand, within Psyr_4273at 5097.011 kb on - strand, within Psyr_4273at 5097.011 kb on - strand, within Psyr_4273at 5097.036 kb on + strand, within Psyr_4273at 5097.128 kb on - strand, within Psyr_4273at 5097.203 kb on + strand, within Psyr_4273at 5097.220 kb on - strand, within Psyr_4273at 5097.220 kb on - strand, within Psyr_4273at 5097.224 kb on + strand, within Psyr_4273at 5097.224 kb on + strand, within Psyr_4273at 5097.224 kb on + strand, within Psyr_4273at 5097.224 kb on + strand, within Psyr_4273at 5097.224 kb on + strand, within Psyr_4273at 5097.224 kb on + strand, within Psyr_4273at 5097.225 kb on - strand, within Psyr_4273at 5097.225 kb on - strand, within Psyr_4273at 5097.225 kb on - strand, within Psyr_4273at 5097.268 kb on + strand, within Psyr_4273at 5097.676 kb on + strand, within Psyr_4273at 5097.676 kb on + strand, within Psyr_4273at 5097.676 kb on + strand, within Psyr_4273at 5097.677 kb on - strand, within Psyr_4273at 5097.677 kb on - strand, within Psyr_4273at 5097.761 kb on - strand, within Psyr_4273at 5097.761 kb on - strand, within Psyr_4273at 5098.003 kb on + strand, within Psyr_4273at 5098.003 kb on + strand, within Psyr_4273at 5098.004 kb on - strand, within Psyr_4273at 5098.004 kb on - strand, within Psyr_4273at 5098.004 kb on - strand, within Psyr_4273at 5098.210 kb on + strand, within Psyr_4273at 5098.210 kb on + strand, within Psyr_4273at 5098.210 kb on + strand, within Psyr_4273at 5098.210 kb on + strand, within Psyr_4273at 5098.211 kb on - strand, within Psyr_4273at 5098.211 kb on - strand, within Psyr_4273at 5098.211 kb on - strand, within Psyr_4273at 5098.218 kb on - strand, within Psyr_4273at 5098.218 kb on - strand, within Psyr_4273at 5098.218 kb on - strand, within Psyr_4273at 5098.219 kb on + strand, within Psyr_4273at 5098.219 kb on + strand, within Psyr_4273at 5098.219 kb on + strand, within Psyr_4273at 5098.219 kb on + strand, within Psyr_4273at 5098.219 kb on + strand, within Psyr_4273at 5098.219 kb on + strand, within Psyr_4273at 5098.219 kb on + strand, within Psyr_4273at 5098.219 kb on + strand, within Psyr_4273at 5098.219 kb on + strand, within Psyr_4273at 5098.219 kb on + strand, within Psyr_4273at 5098.219 kb on + strand, within Psyr_4273at 5098.219 kb on + strand, within Psyr_4273at 5098.219 kb on + strand, within Psyr_4273at 5098.220 kb on - strand, within Psyr_4273at 5098.220 kb on - strand, within Psyr_4273at 5098.220 kb on - strand, within Psyr_4273at 5098.220 kb on - strand, within Psyr_4273at 5098.507 kb on + strand, within Psyr_4273at 5098.606 kb on + strand, within Psyr_4273at 5098.606 kb on + strand, within Psyr_4273at 5098.606 kb on + strand, within Psyr_4273at 5098.606 kb on + strand, within Psyr_4273at 5098.606 kb on + strand, within Psyr_4273at 5098.606 kb on + strand, within Psyr_4273at 5098.607 kb on - strand, within Psyr_4273at 5098.607 kb on - strand, within Psyr_4273at 5098.690 kb on + strandat 5098.690 kb on + strandat 5098.690 kb on + strandat 5098.690 kb on + strandat 5098.690 kb on + strandat 5098.690 kb on + strandat 5098.691 kb on - strandat 5098.691 kb on - strandat 5098.691 kb on - strandat 5098.691 kb on - strandat 5098.691 kb on - strandat 5098.711 kb on + strandat 5098.711 kb on + strandat 5098.711 kb on + strandat 5098.711 kb on + strandat 5098.711 kb on + strandat 5098.712 kb on - strandat 5098.712 kb on - strandat 5098.712 kb on - strandat 5098.712 kb on - strandat 5098.712 kb on - strandat 5098.712 kb on - strandat 5098.712 kb on - strandat 5098.712 kb on - strandat 5098.712 kb on - strandat 5098.715 kb on + strandat 5098.715 kb on + strandat 5098.715 kb on + strandat 5098.715 kb on + strandat 5098.715 kb on + strandat 5098.715 kb on + strandat 5098.715 kb on + strandat 5098.715 kb on + strandat 5098.715 kb on + strandat 5098.715 kb on + strandat 5098.715 kb on + strandat 5098.716 kb on - strandat 5098.716 kb on - strandat 5098.716 kb on - strandat 5098.716 kb on - strandat 5098.716 kb on - strandat 5098.716 kb on - strandat 5098.716 kb on - strandat 5098.841 kb on + strandat 5098.844 kb on + strandat 5098.845 kb on - strandat 5098.877 kb on + strandat 5098.878 kb on - strandat 5098.878 kb on - strandat 5098.878 kb on - strandat 5098.939 kb on - strandat 5098.976 kb on + strandat 5098.976 kb on + strandat 5098.976 kb on + strandat 5098.977 kb on - strandat 5099.042 kb on + strandat 5099.042 kb on + strandat 5099.042 kb on + strandat 5099.042 kb on + strandat 5099.089 kb on - strandat 5099.339 kb on + strand, within Psyr_4274at 5099.339 kb on + strand, within Psyr_4274at 5099.339 kb on + strand, within Psyr_4274at 5099.339 kb on + strand, within Psyr_4274at 5099.339 kb on + strand, within Psyr_4274at 5099.340 kb on - strand, within Psyr_4274at 5099.340 kb on - strand, within Psyr_4274at 5099.340 kb on - strand, within Psyr_4274at 5099.340 kb on - strand, within Psyr_4274at 5099.340 kb on - strand, within Psyr_4274at 5099.504 kb on + strandat 5099.505 kb on - strandat 5099.515 kb on - strandat 5099.515 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM
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5,096,087 + Psyr_4271 0.62 -0.3
5,096,088 - Psyr_4271 0.62 -0.2
5,096,088 - Psyr_4271 0.62 +1.4
5,096,088 - Psyr_4271 0.62 -0.4
5,096,088 - Psyr_4271 0.62 -0.4
5,096,088 - Psyr_4271 0.62 +0.3
5,096,199 + Psyr_4271 0.74 -0.4
5,096,199 + Psyr_4271 0.74 -0.2
5,096,217 - Psyr_4271 0.75 -0.4
5,096,217 - Psyr_4271 0.75 +2.6
5,096,217 - Psyr_4271 0.75 -0.0
5,096,284 + Psyr_4271 0.82 -0.1
5,096,284 + Psyr_4271 0.82 +1.6
5,096,457 + +1.0
5,096,457 + -1.3
5,096,458 - +0.7
5,096,536 + -0.3
5,096,620 + Psyr_4272 0.34 -2.8
5,096,620 + Psyr_4272 0.34 +0.1
5,096,620 + Psyr_4272 0.34 +1.3
5,096,620 + Psyr_4272 0.34 -1.0
5,096,621 - Psyr_4272 0.34 -0.7
5,096,668 + Psyr_4272 0.58 +2.0
5,096,668 + Psyr_4272 0.58 -0.3
5,096,669 - Psyr_4272 0.59 -1.4
5,096,669 - Psyr_4272 0.59 +0.0
5,096,669 - Psyr_4272 0.59 +1.4
5,096,669 - Psyr_4272 0.59 -2.4
5,096,719 + Psyr_4272 0.84 -1.6
5,096,720 - Psyr_4272 0.84 +0.5
5,096,865 - +0.1
5,096,872 + +0.1
5,096,872 + -0.9
5,096,873 - +0.6
5,096,929 + -0.4
5,096,929 + -0.0
5,096,930 - +1.0
5,097,010 + Psyr_4273 0.11 -0.3
5,097,010 + Psyr_4273 0.11 -2.9
5,097,010 + Psyr_4273 0.11 -0.6
5,097,011 - Psyr_4273 0.11 +0.2
5,097,011 - Psyr_4273 0.11 +1.4
5,097,011 - Psyr_4273 0.11 -0.6
5,097,036 + Psyr_4273 0.12 -1.7
5,097,128 - Psyr_4273 0.17 +0.8
5,097,203 + Psyr_4273 0.20 +0.3
5,097,220 - Psyr_4273 0.21 -0.6
5,097,220 - Psyr_4273 0.21 +0.9
5,097,224 + Psyr_4273 0.21 +1.9
5,097,224 + Psyr_4273 0.21 -0.2
5,097,224 + Psyr_4273 0.21 -0.8
5,097,224 + Psyr_4273 0.21 -1.2
5,097,224 + Psyr_4273 0.21 +1.1
5,097,224 + Psyr_4273 0.21 -0.4
5,097,225 - Psyr_4273 0.22 +3.3
5,097,225 - Psyr_4273 0.22 +0.6
5,097,225 - Psyr_4273 0.22 -0.2
5,097,268 + Psyr_4273 0.24 -3.7
5,097,676 + Psyr_4273 0.43 -2.0
5,097,676 + Psyr_4273 0.43 -2.7
5,097,676 + Psyr_4273 0.43 -0.2
5,097,677 - Psyr_4273 0.43 -0.0
5,097,677 - Psyr_4273 0.43 -0.4
5,097,761 - Psyr_4273 0.47 +0.1
5,097,761 - Psyr_4273 0.47 -0.8
5,098,003 + Psyr_4273 0.59 +0.5
5,098,003 + Psyr_4273 0.59 -0.4
5,098,004 - Psyr_4273 0.59 -0.5
5,098,004 - Psyr_4273 0.59 -1.0
5,098,004 - Psyr_4273 0.59 +0.3
5,098,210 + Psyr_4273 0.69 -1.7
5,098,210 + Psyr_4273 0.69 -0.3
5,098,210 + Psyr_4273 0.69 -0.3
5,098,210 + Psyr_4273 0.69 -0.2
5,098,211 - Psyr_4273 0.69 +0.4
5,098,211 - Psyr_4273 0.69 -1.4
5,098,211 - Psyr_4273 0.69 +3.3
5,098,218 - Psyr_4273 0.69 +0.7
5,098,218 - Psyr_4273 0.69 +0.3
5,098,218 - Psyr_4273 0.69 -0.0
5,098,219 + Psyr_4273 0.69 -0.3
5,098,219 + Psyr_4273 0.69 -0.4
5,098,219 + Psyr_4273 0.69 +0.5
5,098,219 + Psyr_4273 0.69 -0.0
5,098,219 + Psyr_4273 0.69 -0.7
5,098,219 + Psyr_4273 0.69 -2.1
5,098,219 + Psyr_4273 0.69 +1.5
5,098,219 + Psyr_4273 0.69 -0.1
5,098,219 + Psyr_4273 0.69 +0.1
5,098,219 + Psyr_4273 0.69 -1.5
5,098,219 + Psyr_4273 0.69 +3.4
5,098,219 + Psyr_4273 0.69 -0.3
5,098,219 + Psyr_4273 0.69 +0.1
5,098,220 - Psyr_4273 0.69 -0.0
5,098,220 - Psyr_4273 0.69 +0.5
5,098,220 - Psyr_4273 0.69 -1.1
5,098,220 - Psyr_4273 0.69 +2.5
5,098,507 + Psyr_4273 0.83 +0.3
5,098,606 + Psyr_4273 0.88 -0.6
5,098,606 + Psyr_4273 0.88 +0.8
5,098,606 + Psyr_4273 0.88 -0.3
5,098,606 + Psyr_4273 0.88 -1.0
5,098,606 + Psyr_4273 0.88 -0.2
5,098,606 + Psyr_4273 0.88 -0.2
5,098,607 - Psyr_4273 0.88 +0.3
5,098,607 - Psyr_4273 0.88 +0.1
5,098,690 + -0.3
5,098,690 + -0.8
5,098,690 + +1.0
5,098,690 + +1.1
5,098,690 + -0.4
5,098,690 + -0.9
5,098,691 - +1.7
5,098,691 - -0.4
5,098,691 - +0.5
5,098,691 - +0.8
5,098,691 - -1.5
5,098,711 + +0.1
5,098,711 + -0.5
5,098,711 + +0.1
5,098,711 + -0.8
5,098,711 + +0.3
5,098,712 - -1.5
5,098,712 - +1.0
5,098,712 - -1.6
5,098,712 - -0.3
5,098,712 - -0.0
5,098,712 - -0.5
5,098,712 - +0.2
5,098,712 - -0.3
5,098,712 - +0.0
5,098,715 + -0.4
5,098,715 + -0.5
5,098,715 + +3.3
5,098,715 + -0.1
5,098,715 + -1.4
5,098,715 + -0.1
5,098,715 + -1.5
5,098,715 + +0.7
5,098,715 + -0.2
5,098,715 + -0.0
5,098,715 + -1.4
5,098,716 - +1.1
5,098,716 - +0.5
5,098,716 - -2.6
5,098,716 - -1.4
5,098,716 - -0.5
5,098,716 - -0.2
5,098,716 - -0.1
5,098,841 + +1.3
5,098,844 + -1.4
5,098,845 - +1.9
5,098,877 + +2.0
5,098,878 - -1.0
5,098,878 - -0.4
5,098,878 - -2.3
5,098,939 - -2.8
5,098,976 + -1.5
5,098,976 + -0.6
5,098,976 + +0.5
5,098,977 - +0.4
5,099,042 + -2.5
5,099,042 + +0.6
5,099,042 + +1.2
5,099,042 + +4.7
5,099,089 - -1.2
5,099,339 + Psyr_4274 0.54 +1.0
5,099,339 + Psyr_4274 0.54 -2.1
5,099,339 + Psyr_4274 0.54 +2.3
5,099,339 + Psyr_4274 0.54 +0.8
5,099,339 + Psyr_4274 0.54 -1.2
5,099,340 - Psyr_4274 0.55 +0.4
5,099,340 - Psyr_4274 0.55 -0.2
5,099,340 - Psyr_4274 0.55 -1.7
5,099,340 - Psyr_4274 0.55 +0.7
5,099,340 - Psyr_4274 0.55 -0.2
5,099,504 + +0.5
5,099,505 - -0.1
5,099,515 - +2.0
5,099,515 - +1.1

Or see this region's nucleotide sequence