Experiment: KB with Palmatine chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4242 and Psyr_4243 are separated by 135 nucleotides Psyr_4243 and Psyr_4244 are separated by 341 nucleotides
Psyr_4242: Psyr_4242 - Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal, at 5,054,531 to 5,055,505
_4242
Psyr_4243: Psyr_4243 - Oxidoreductase FAD/NAD(P)-binding:PepSY-associated TM helix:Flavodoxin/nitric oxide synthase, at 5,055,641 to 5,058,163
_4243
Psyr_4244: Psyr_4244 - hypothetical protein, at 5,058,505 to 5,059,749
_4244
Position (kb) 5055
5056
5057
5058
5059 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 5054.831 kb on + strand, within Psyr_4242 at 5054.831 kb on + strand, within Psyr_4242 at 5054.969 kb on + strand, within Psyr_4242 at 5054.969 kb on + strand, within Psyr_4242 at 5054.970 kb on - strand, within Psyr_4242 at 5055.088 kb on - strand, within Psyr_4242 at 5055.106 kb on - strand, within Psyr_4242 at 5055.106 kb on - strand, within Psyr_4242 at 5055.149 kb on + strand, within Psyr_4242 at 5055.149 kb on + strand, within Psyr_4242 at 5055.149 kb on + strand, within Psyr_4242 at 5055.149 kb on + strand, within Psyr_4242 at 5055.149 kb on + strand, within Psyr_4242 at 5055.150 kb on - strand, within Psyr_4242 at 5055.150 kb on - strand, within Psyr_4242 at 5055.150 kb on - strand, within Psyr_4242 at 5055.150 kb on - strand, within Psyr_4242 at 5055.212 kb on + strand, within Psyr_4242 at 5055.212 kb on + strand, within Psyr_4242 at 5055.213 kb on - strand, within Psyr_4242 at 5055.213 kb on - strand, within Psyr_4242 at 5055.213 kb on - strand, within Psyr_4242 at 5055.254 kb on + strand, within Psyr_4242 at 5055.254 kb on + strand, within Psyr_4242 at 5055.254 kb on + strand, within Psyr_4242 at 5055.255 kb on - strand, within Psyr_4242 at 5055.255 kb on - strand, within Psyr_4242 at 5055.255 kb on - strand, within Psyr_4242 at 5055.255 kb on - strand, within Psyr_4242 at 5055.255 kb on - strand, within Psyr_4242 at 5055.255 kb on - strand, within Psyr_4242 at 5055.275 kb on + strand, within Psyr_4242 at 5055.504 kb on - strand at 5055.528 kb on + strand at 5055.529 kb on - strand at 5055.529 kb on - strand at 5055.529 kb on - strand at 5055.529 kb on - strand at 5055.535 kb on + strand at 5055.536 kb on - strand at 5055.536 kb on - strand at 5055.536 kb on - strand at 5055.536 kb on - strand at 5055.542 kb on + strand at 5055.542 kb on + strand at 5055.543 kb on - strand at 5055.543 kb on - strand at 5055.543 kb on - strand at 5055.543 kb on - strand at 5055.549 kb on + strand at 5055.549 kb on + strand at 5055.550 kb on - strand at 5055.550 kb on - strand at 5055.556 kb on + strand at 5055.556 kb on + strand at 5055.556 kb on + strand at 5055.563 kb on + strand at 5055.563 kb on + strand at 5055.563 kb on + strand at 5055.563 kb on + strand at 5055.570 kb on + strand at 5055.570 kb on + strand at 5055.570 kb on + strand at 5055.570 kb on + strand at 5055.570 kb on + strand at 5055.570 kb on + strand at 5055.570 kb on + strand at 5055.578 kb on + strand at 5055.645 kb on + strand at 5055.645 kb on + strand at 5055.646 kb on - strand at 5055.762 kb on + strand at 5055.762 kb on + strand at 5055.762 kb on + strand at 5055.762 kb on + strand at 5055.762 kb on + strand at 5055.762 kb on + strand at 5055.762 kb on + strand at 5055.763 kb on - strand at 5055.763 kb on - strand at 5055.763 kb on - strand at 5055.789 kb on - strand at 5055.831 kb on + strand at 5055.831 kb on + strand at 5055.831 kb on + strand at 5055.832 kb on - strand at 5055.832 kb on - strand at 5055.832 kb on - strand at 5055.832 kb on - strand at 5056.471 kb on + strand, within Psyr_4243 at 5056.472 kb on - strand, within Psyr_4243 at 5056.472 kb on - strand, within Psyr_4243 at 5056.494 kb on + strand, within Psyr_4243 at 5056.494 kb on + strand, within Psyr_4243 at 5056.494 kb on + strand, within Psyr_4243 at 5056.494 kb on + strand, within Psyr_4243 at 5056.494 kb on + strand, within Psyr_4243 at 5056.495 kb on - strand, within Psyr_4243 at 5056.738 kb on - strand, within Psyr_4243 at 5056.767 kb on + strand, within Psyr_4243 at 5056.876 kb on + strand, within Psyr_4243 at 5056.877 kb on - strand, within Psyr_4243 at 5056.889 kb on + strand, within Psyr_4243 at 5056.890 kb on - strand, within Psyr_4243 at 5056.890 kb on - strand, within Psyr_4243 at 5056.890 kb on - strand, within Psyr_4243 at 5057.100 kb on + strand, within Psyr_4243 at 5057.101 kb on - strand, within Psyr_4243 at 5057.120 kb on - strand, within Psyr_4243 at 5057.182 kb on - strand, within Psyr_4243 at 5057.182 kb on - strand, within Psyr_4243 at 5057.202 kb on + strand, within Psyr_4243 at 5057.202 kb on + strand, within Psyr_4243 at 5057.203 kb on - strand, within Psyr_4243 at 5057.249 kb on + strand, within Psyr_4243 at 5057.249 kb on + strand, within Psyr_4243 at 5057.249 kb on + strand, within Psyr_4243 at 5057.249 kb on + strand, within Psyr_4243 at 5057.250 kb on - strand, within Psyr_4243 at 5057.250 kb on - strand, within Psyr_4243 at 5057.250 kb on - strand, within Psyr_4243 at 5057.250 kb on - strand, within Psyr_4243 at 5057.250 kb on - strand, within Psyr_4243 at 5057.332 kb on - strand, within Psyr_4243 at 5057.332 kb on - strand, within Psyr_4243 at 5057.378 kb on - strand, within Psyr_4243 at 5057.378 kb on - strand, within Psyr_4243 at 5057.379 kb on + strand, within Psyr_4243 at 5057.379 kb on + strand, within Psyr_4243 at 5057.379 kb on + strand, within Psyr_4243 at 5057.379 kb on + strand, within Psyr_4243 at 5057.379 kb on + strand, within Psyr_4243 at 5057.379 kb on + strand, within Psyr_4243 at 5057.379 kb on + strand, within Psyr_4243 at 5057.380 kb on - strand, within Psyr_4243 at 5057.380 kb on - strand, within Psyr_4243 at 5057.380 kb on - strand, within Psyr_4243 at 5057.380 kb on - strand, within Psyr_4243 at 5057.380 kb on - strand, within Psyr_4243 at 5057.380 kb on - strand, within Psyr_4243 at 5057.380 kb on - strand, within Psyr_4243 at 5057.380 kb on - strand, within Psyr_4243 at 5057.433 kb on + strand, within Psyr_4243 at 5057.433 kb on + strand, within Psyr_4243 at 5057.434 kb on - strand, within Psyr_4243 at 5057.434 kb on - strand, within Psyr_4243 at 5057.515 kb on + strand, within Psyr_4243 at 5057.541 kb on + strand, within Psyr_4243 at 5057.541 kb on + strand, within Psyr_4243 at 5057.541 kb on + strand, within Psyr_4243 at 5057.542 kb on - strand, within Psyr_4243 at 5057.542 kb on - strand, within Psyr_4243 at 5057.542 kb on - strand, within Psyr_4243 at 5057.542 kb on - strand, within Psyr_4243 at 5057.542 kb on - strand, within Psyr_4243 at 5057.542 kb on - strand, within Psyr_4243 at 5057.577 kb on + strand, within Psyr_4243 at 5057.577 kb on + strand, within Psyr_4243 at 5057.578 kb on - strand, within Psyr_4243 at 5057.700 kb on + strand, within Psyr_4243 at 5057.701 kb on - strand, within Psyr_4243 at 5057.701 kb on - strand, within Psyr_4243 at 5057.737 kb on + strand, within Psyr_4243 at 5057.738 kb on - strand, within Psyr_4243 at 5057.850 kb on + strand, within Psyr_4243 at 5057.851 kb on - strand, within Psyr_4243 at 5058.075 kb on + strand at 5058.075 kb on + strand at 5058.201 kb on + strand at 5058.201 kb on + strand at 5058.291 kb on + strand at 5058.293 kb on + strand at 5058.294 kb on - strand at 5058.294 kb on - strand at 5058.303 kb on + strand at 5058.303 kb on + strand at 5058.304 kb on - strand at 5058.304 kb on - strand at 5058.330 kb on + strand at 5058.331 kb on - strand at 5058.378 kb on + strand at 5058.378 kb on + strand at 5058.379 kb on - strand at 5058.379 kb on - strand at 5058.379 kb on - strand at 5058.379 kb on - strand at 5058.427 kb on + strand at 5058.451 kb on + strand at 5058.452 kb on - strand at 5058.452 kb on - strand at 5058.492 kb on + strand at 5058.493 kb on - strand at 5058.521 kb on - strand at 5058.682 kb on + strand, within Psyr_4244 at 5058.682 kb on + strand, within Psyr_4244 at 5058.743 kb on - strand, within Psyr_4244 at 5058.802 kb on - strand, within Psyr_4244 at 5058.854 kb on + strand, within Psyr_4244 at 5058.855 kb on - strand, within Psyr_4244 at 5058.982 kb on - strand, within Psyr_4244 at 5059.062 kb on - strand, within Psyr_4244 at 5059.081 kb on - strand, within Psyr_4244 at 5059.082 kb on + strand, within Psyr_4244 at 5059.082 kb on + strand, within Psyr_4244 at 5059.083 kb on - strand, within Psyr_4244 at 5059.083 kb on - strand, within Psyr_4244 at 5059.083 kb on - strand, within Psyr_4244 at 5059.083 kb on - strand, within Psyr_4244 at 5059.083 kb on - strand, within Psyr_4244
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM remove 5,054,831 + Psyr_4242 0.31 -4.2 5,054,831 + Psyr_4242 0.31 -1.9 5,054,969 + Psyr_4242 0.45 -0.6 5,054,969 + Psyr_4242 0.45 -0.2 5,054,970 - Psyr_4242 0.45 +0.2 5,055,088 - Psyr_4242 0.57 -1.8 5,055,106 - Psyr_4242 0.59 +1.0 5,055,106 - Psyr_4242 0.59 -2.4 5,055,149 + Psyr_4242 0.63 -0.5 5,055,149 + Psyr_4242 0.63 +0.7 5,055,149 + Psyr_4242 0.63 -0.2 5,055,149 + Psyr_4242 0.63 -0.5 5,055,149 + Psyr_4242 0.63 +1.3 5,055,150 - Psyr_4242 0.63 +0.9 5,055,150 - Psyr_4242 0.63 -2.2 5,055,150 - Psyr_4242 0.63 -1.9 5,055,150 - Psyr_4242 0.63 -1.2 5,055,212 + Psyr_4242 0.70 +0.4 5,055,212 + Psyr_4242 0.70 -0.9 5,055,213 - Psyr_4242 0.70 -1.2 5,055,213 - Psyr_4242 0.70 +1.3 5,055,213 - Psyr_4242 0.70 +0.3 5,055,254 + Psyr_4242 0.74 -2.7 5,055,254 + Psyr_4242 0.74 -0.8 5,055,254 + Psyr_4242 0.74 +0.6 5,055,255 - Psyr_4242 0.74 -0.7 5,055,255 - Psyr_4242 0.74 -2.1 5,055,255 - Psyr_4242 0.74 -2.0 5,055,255 - Psyr_4242 0.74 -0.5 5,055,255 - Psyr_4242 0.74 -1.0 5,055,255 - Psyr_4242 0.74 -0.4 5,055,275 + Psyr_4242 0.76 -0.6 5,055,504 - +0.5 5,055,528 + +0.6 5,055,529 - -3.3 5,055,529 - -2.2 5,055,529 - -1.6 5,055,529 - +2.3 5,055,535 + -2.2 5,055,536 - +0.2 5,055,536 - -0.7 5,055,536 - -0.5 5,055,536 - +0.5 5,055,542 + +0.5 5,055,542 + -1.0 5,055,543 - +1.3 5,055,543 - -1.7 5,055,543 - +1.5 5,055,543 - -0.0 5,055,549 + -0.6 5,055,549 + -2.5 5,055,550 - -0.6 5,055,550 - +1.3 5,055,556 + -1.3 5,055,556 + +0.1 5,055,556 + -0.0 5,055,563 + +0.1 5,055,563 + +0.8 5,055,563 + +0.5 5,055,563 + +0.9 5,055,570 + +0.0 5,055,570 + +0.3 5,055,570 + +0.3 5,055,570 + +0.3 5,055,570 + -0.1 5,055,570 + -0.5 5,055,570 + +0.3 5,055,578 + +0.3 5,055,645 + +0.3 5,055,645 + -2.5 5,055,646 - -0.0 5,055,762 + -0.1 5,055,762 + +0.4 5,055,762 + +0.7 5,055,762 + +0.2 5,055,762 + +0.5 5,055,762 + -2.2 5,055,762 + -0.4 5,055,763 - +1.0 5,055,763 - +0.0 5,055,763 - +0.4 5,055,789 - +0.3 5,055,831 + +0.3 5,055,831 + +0.0 5,055,831 + +0.6 5,055,832 - +1.5 5,055,832 - +1.3 5,055,832 - -0.0 5,055,832 - -2.2 5,056,471 + Psyr_4243 0.33 -0.1 5,056,472 - Psyr_4243 0.33 +0.1 5,056,472 - Psyr_4243 0.33 +2.3 5,056,494 + Psyr_4243 0.34 -0.1 5,056,494 + Psyr_4243 0.34 -0.4 5,056,494 + Psyr_4243 0.34 -0.7 5,056,494 + Psyr_4243 0.34 +1.7 5,056,494 + Psyr_4243 0.34 -0.0 5,056,495 - Psyr_4243 0.34 -1.2 5,056,738 - Psyr_4243 0.43 +2.3 5,056,767 + Psyr_4243 0.45 +1.9 5,056,876 + Psyr_4243 0.49 +2.1 5,056,877 - Psyr_4243 0.49 +0.3 5,056,889 + Psyr_4243 0.49 +0.7 5,056,890 - Psyr_4243 0.50 +0.3 5,056,890 - Psyr_4243 0.50 -0.3 5,056,890 - Psyr_4243 0.50 +0.1 5,057,100 + Psyr_4243 0.58 -1.5 5,057,101 - Psyr_4243 0.58 +0.7 5,057,120 - Psyr_4243 0.59 +0.3 5,057,182 - Psyr_4243 0.61 +4.4 5,057,182 - Psyr_4243 0.61 +3.6 5,057,202 + Psyr_4243 0.62 -0.0 5,057,202 + Psyr_4243 0.62 +0.5 5,057,203 - Psyr_4243 0.62 +1.0 5,057,249 + Psyr_4243 0.64 -0.7 5,057,249 + Psyr_4243 0.64 -1.4 5,057,249 + Psyr_4243 0.64 +0.3 5,057,249 + Psyr_4243 0.64 +0.0 5,057,250 - Psyr_4243 0.64 +0.2 5,057,250 - Psyr_4243 0.64 -1.7 5,057,250 - Psyr_4243 0.64 +0.3 5,057,250 - Psyr_4243 0.64 -0.3 5,057,250 - Psyr_4243 0.64 -0.6 5,057,332 - Psyr_4243 0.67 +0.7 5,057,332 - Psyr_4243 0.67 -1.1 5,057,378 - Psyr_4243 0.69 -0.3 5,057,378 - Psyr_4243 0.69 -0.5 5,057,379 + Psyr_4243 0.69 -1.6 5,057,379 + Psyr_4243 0.69 +1.2 5,057,379 + Psyr_4243 0.69 -0.3 5,057,379 + Psyr_4243 0.69 +0.8 5,057,379 + Psyr_4243 0.69 -0.6 5,057,379 + Psyr_4243 0.69 +0.4 5,057,379 + Psyr_4243 0.69 +1.5 5,057,380 - Psyr_4243 0.69 +0.7 5,057,380 - Psyr_4243 0.69 -0.3 5,057,380 - Psyr_4243 0.69 -0.4 5,057,380 - Psyr_4243 0.69 -0.5 5,057,380 - Psyr_4243 0.69 -0.5 5,057,380 - Psyr_4243 0.69 -1.5 5,057,380 - Psyr_4243 0.69 +0.9 5,057,380 - Psyr_4243 0.69 -2.3 5,057,433 + Psyr_4243 0.71 +2.1 5,057,433 + Psyr_4243 0.71 +0.6 5,057,434 - Psyr_4243 0.71 +1.9 5,057,434 - Psyr_4243 0.71 +0.6 5,057,515 + Psyr_4243 0.74 -0.6 5,057,541 + Psyr_4243 0.75 +2.3 5,057,541 + Psyr_4243 0.75 -0.8 5,057,541 + Psyr_4243 0.75 +0.2 5,057,542 - Psyr_4243 0.75 +0.7 5,057,542 - Psyr_4243 0.75 -0.1 5,057,542 - Psyr_4243 0.75 -1.1 5,057,542 - Psyr_4243 0.75 -0.3 5,057,542 - Psyr_4243 0.75 +0.6 5,057,542 - Psyr_4243 0.75 +0.0 5,057,577 + Psyr_4243 0.77 +1.3 5,057,577 + Psyr_4243 0.77 +1.8 5,057,578 - Psyr_4243 0.77 +2.3 5,057,700 + Psyr_4243 0.82 +0.2 5,057,701 - Psyr_4243 0.82 +0.3 5,057,701 - Psyr_4243 0.82 +0.6 5,057,737 + Psyr_4243 0.83 -0.7 5,057,738 - Psyr_4243 0.83 +0.1 5,057,850 + Psyr_4243 0.88 +1.3 5,057,851 - Psyr_4243 0.88 +0.1 5,058,075 + -0.2 5,058,075 + -0.9 5,058,201 + -2.1 5,058,201 + -0.9 5,058,291 + -0.8 5,058,293 + +1.0 5,058,294 - +1.6 5,058,294 - -0.9 5,058,303 + -0.3 5,058,303 + +0.8 5,058,304 - -0.8 5,058,304 - -0.8 5,058,330 + -0.4 5,058,331 - -0.2 5,058,378 + +0.4 5,058,378 + -2.5 5,058,379 - -1.1 5,058,379 - +0.3 5,058,379 - +0.3 5,058,379 - -0.3 5,058,427 + +0.8 5,058,451 + -0.3 5,058,452 - +0.1 5,058,452 - +0.7 5,058,492 + -0.3 5,058,493 - +2.6 5,058,521 - -0.4 5,058,682 + Psyr_4244 0.14 +3.3 5,058,682 + Psyr_4244 0.14 +1.4 5,058,743 - Psyr_4244 0.19 -0.2 5,058,802 - Psyr_4244 0.24 +1.1 5,058,854 + Psyr_4244 0.28 -0.5 5,058,855 - Psyr_4244 0.28 -0.3 5,058,982 - Psyr_4244 0.38 +0.4 5,059,062 - Psyr_4244 0.45 +0.5 5,059,081 - Psyr_4244 0.46 +0.2 5,059,082 + Psyr_4244 0.46 +1.3 5,059,082 + Psyr_4244 0.46 +0.0 5,059,083 - Psyr_4244 0.46 -0.3 5,059,083 - Psyr_4244 0.46 -1.6 5,059,083 - Psyr_4244 0.46 -0.9 5,059,083 - Psyr_4244 0.46 +2.3 5,059,083 - Psyr_4244 0.46 +0.2
Or see this region's nucleotide sequence