Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3956

Experiment: KB with Palmatine chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3955 and Psyr_3956 are separated by 284 nucleotidesPsyr_3956 and Psyr_3957 are separated by 8 nucleotidesPsyr_3957 and Psyr_3958 are separated by 33 nucleotides Psyr_3955: Psyr_3955 - Peptidase S1, chymotrypsin:PDZ/DHR/GLGF, at 4,702,696 to 4,704,141 _3955 Psyr_3956: Psyr_3956 - sigma E regulatory protein, MucB/RseB, at 4,704,426 to 4,705,385 _3956 Psyr_3957: Psyr_3957 - anti sigma-E protein, RseA, at 4,705,394 to 4,705,984 _3957 Psyr_3958: Psyr_3958 - RNA polymerase, sigma-24 subunit, RpoE, at 4,706,018 to 4,706,599 _3958 Position (kb) 4704 4705 4706Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.516 kb on + strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.517 kb on - strand, within Psyr_3955at 4703.556 kb on + strand, within Psyr_3955at 4703.750 kb on - strand, within Psyr_3955at 4703.750 kb on - strand, within Psyr_3955at 4703.776 kb on + strand, within Psyr_3955at 4703.777 kb on - strand, within Psyr_3955at 4703.777 kb on - strand, within Psyr_3955at 4704.073 kb on - strandat 4704.117 kb on - strandat 4704.133 kb on + strandat 4704.141 kb on + strandat 4704.141 kb on + strandat 4704.141 kb on + strandat 4704.141 kb on + strandat 4704.141 kb on + strandat 4704.141 kb on + strandat 4704.142 kb on - strandat 4704.142 kb on - strandat 4704.142 kb on - strandat 4704.142 kb on - strandat 4704.156 kb on + strandat 4704.172 kb on - strandat 4704.281 kb on + strandat 4704.281 kb on + strandat 4704.281 kb on + strandat 4704.282 kb on - strandat 4704.282 kb on - strandat 4704.284 kb on - strandat 4704.427 kb on + strandat 4704.427 kb on + strandat 4704.428 kb on - strandat 4704.428 kb on - strandat 4704.469 kb on - strandat 4704.469 kb on - strandat 4704.567 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.646 kb on + strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.647 kb on - strand, within Psyr_3956at 4704.675 kb on - strand, within Psyr_3956at 4704.983 kb on + strand, within Psyr_3956at 4704.983 kb on + strand, within Psyr_3956at 4704.984 kb on - strand, within Psyr_3956at 4704.984 kb on - strand, within Psyr_3956at 4705.034 kb on - strand, within Psyr_3956at 4705.146 kb on + strand, within Psyr_3956at 4705.146 kb on + strand, within Psyr_3956at 4705.147 kb on - strand, within Psyr_3956at 4705.147 kb on - strand, within Psyr_3956at 4705.174 kb on - strand, within Psyr_3956at 4705.227 kb on - strand, within Psyr_3956at 4705.236 kb on - strand, within Psyr_3956at 4705.236 kb on - strand, within Psyr_3956at 4705.259 kb on + strand, within Psyr_3956at 4705.259 kb on + strand, within Psyr_3956at 4705.259 kb on + strand, within Psyr_3956at 4705.260 kb on - strand, within Psyr_3956at 4705.260 kb on - strand, within Psyr_3956at 4705.260 kb on - strand, within Psyr_3956at 4705.260 kb on - strand, within Psyr_3956at 4705.267 kb on + strand, within Psyr_3956at 4705.268 kb on - strand, within Psyr_3956at 4705.736 kb on - strand, within Psyr_3957at 4706.130 kb on + strand, within Psyr_3958at 4706.153 kb on + strand, within Psyr_3958at 4706.154 kb on - strand, within Psyr_3958at 4706.154 kb on - strand, within Psyr_3958at 4706.167 kb on + strand, within Psyr_3958at 4706.171 kb on + strand, within Psyr_3958at 4706.171 kb on + strand, within Psyr_3958at 4706.171 kb on + strand, within Psyr_3958at 4706.172 kb on - strand, within Psyr_3958at 4706.303 kb on + strand, within Psyr_3958at 4706.303 kb on + strand, within Psyr_3958at 4706.303 kb on + strand, within Psyr_3958at 4706.303 kb on + strand, within Psyr_3958at 4706.303 kb on + strand, within Psyr_3958at 4706.303 kb on + strand, within Psyr_3958at 4706.304 kb on - strand, within Psyr_3958at 4706.304 kb on - strand, within Psyr_3958at 4706.304 kb on - strand, within Psyr_3958at 4706.304 kb on - strand, within Psyr_3958at 4706.304 kb on - strand, within Psyr_3958at 4706.304 kb on - strand, within Psyr_3958at 4706.304 kb on - strand, within Psyr_3958at 4706.304 kb on - strand, within Psyr_3958at 4706.343 kb on + strand, within Psyr_3958at 4706.343 kb on + strand, within Psyr_3958at 4706.344 kb on - strand, within Psyr_3958at 4706.344 kb on - strand, within Psyr_3958at 4706.344 kb on - strand, within Psyr_3958at 4706.344 kb on - strand, within Psyr_3958

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM
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4,703,516 + Psyr_3955 0.57 -0.7
4,703,516 + Psyr_3955 0.57 +0.8
4,703,516 + Psyr_3955 0.57 +1.6
4,703,516 + Psyr_3955 0.57 +1.8
4,703,516 + Psyr_3955 0.57 +1.3
4,703,516 + Psyr_3955 0.57 +0.2
4,703,516 + Psyr_3955 0.57 +1.3
4,703,516 + Psyr_3955 0.57 +2.4
4,703,516 + Psyr_3955 0.57 +1.2
4,703,517 - Psyr_3955 0.57 +2.6
4,703,517 - Psyr_3955 0.57 +4.0
4,703,517 - Psyr_3955 0.57 +0.5
4,703,517 - Psyr_3955 0.57 +2.3
4,703,517 - Psyr_3955 0.57 -1.6
4,703,517 - Psyr_3955 0.57 +1.1
4,703,517 - Psyr_3955 0.57 +0.6
4,703,556 + Psyr_3955 0.59 +0.6
4,703,750 - Psyr_3955 0.73 +1.4
4,703,750 - Psyr_3955 0.73 -0.4
4,703,776 + Psyr_3955 0.75 +0.8
4,703,777 - Psyr_3955 0.75 +2.4
4,703,777 - Psyr_3955 0.75 +2.5
4,704,073 - +0.1
4,704,117 - +1.4
4,704,133 + +1.6
4,704,141 + +1.7
4,704,141 + +0.9
4,704,141 + +1.4
4,704,141 + +3.5
4,704,141 + +1.9
4,704,141 + +2.5
4,704,142 - +1.1
4,704,142 - +1.2
4,704,142 - +0.7
4,704,142 - -1.9
4,704,156 + +0.3
4,704,172 - -0.5
4,704,281 + +2.2
4,704,281 + +1.8
4,704,281 + +0.7
4,704,282 - -0.8
4,704,282 - -2.5
4,704,284 - -0.2
4,704,427 + +1.7
4,704,427 + +0.5
4,704,428 - -1.1
4,704,428 - +0.6
4,704,469 - +0.2
4,704,469 - +1.8
4,704,567 + Psyr_3956 0.15 +1.0
4,704,646 + Psyr_3956 0.23 +1.2
4,704,646 + Psyr_3956 0.23 +3.2
4,704,646 + Psyr_3956 0.23 +0.0
4,704,646 + Psyr_3956 0.23 +2.7
4,704,646 + Psyr_3956 0.23 +1.4
4,704,646 + Psyr_3956 0.23 +2.5
4,704,646 + Psyr_3956 0.23 +4.0
4,704,647 - Psyr_3956 0.23 +0.0
4,704,647 - Psyr_3956 0.23 -0.4
4,704,647 - Psyr_3956 0.23 +1.5
4,704,647 - Psyr_3956 0.23 -0.2
4,704,647 - Psyr_3956 0.23 -0.2
4,704,647 - Psyr_3956 0.23 -0.5
4,704,647 - Psyr_3956 0.23 -0.7
4,704,675 - Psyr_3956 0.26 -1.4
4,704,983 + Psyr_3956 0.58 +0.7
4,704,983 + Psyr_3956 0.58 +0.4
4,704,984 - Psyr_3956 0.58 -2.4
4,704,984 - Psyr_3956 0.58 +0.8
4,705,034 - Psyr_3956 0.63 +1.9
4,705,146 + Psyr_3956 0.75 +0.4
4,705,146 + Psyr_3956 0.75 -3.2
4,705,147 - Psyr_3956 0.75 -1.5
4,705,147 - Psyr_3956 0.75 +0.5
4,705,174 - Psyr_3956 0.78 +0.0
4,705,227 - Psyr_3956 0.83 +1.5
4,705,236 - Psyr_3956 0.84 +3.5
4,705,236 - Psyr_3956 0.84 +0.4
4,705,259 + Psyr_3956 0.87 -0.6
4,705,259 + Psyr_3956 0.87 +0.5
4,705,259 + Psyr_3956 0.87 -1.5
4,705,260 - Psyr_3956 0.87 +0.4
4,705,260 - Psyr_3956 0.87 +0.5
4,705,260 - Psyr_3956 0.87 +1.2
4,705,260 - Psyr_3956 0.87 +1.6
4,705,267 + Psyr_3956 0.88 +0.7
4,705,268 - Psyr_3956 0.88 +0.1
4,705,736 - Psyr_3957 0.58 -1.5
4,706,130 + Psyr_3958 0.19 -0.8
4,706,153 + Psyr_3958 0.23 +1.3
4,706,154 - Psyr_3958 0.23 -0.8
4,706,154 - Psyr_3958 0.23 +0.4
4,706,167 + Psyr_3958 0.26 +2.4
4,706,171 + Psyr_3958 0.26 -2.8
4,706,171 + Psyr_3958 0.26 +1.5
4,706,171 + Psyr_3958 0.26 +0.8
4,706,172 - Psyr_3958 0.26 +2.0
4,706,303 + Psyr_3958 0.49 +0.2
4,706,303 + Psyr_3958 0.49 -0.9
4,706,303 + Psyr_3958 0.49 +1.2
4,706,303 + Psyr_3958 0.49 +1.5
4,706,303 + Psyr_3958 0.49 +0.8
4,706,303 + Psyr_3958 0.49 +2.2
4,706,304 - Psyr_3958 0.49 +1.2
4,706,304 - Psyr_3958 0.49 +2.1
4,706,304 - Psyr_3958 0.49 +0.5
4,706,304 - Psyr_3958 0.49 -0.0
4,706,304 - Psyr_3958 0.49 +2.0
4,706,304 - Psyr_3958 0.49 +1.1
4,706,304 - Psyr_3958 0.49 +2.8
4,706,304 - Psyr_3958 0.49 +0.2
4,706,343 + Psyr_3958 0.56 +1.7
4,706,343 + Psyr_3958 0.56 +0.6
4,706,344 - Psyr_3958 0.56 -0.0
4,706,344 - Psyr_3958 0.56 +1.0
4,706,344 - Psyr_3958 0.56 +0.4
4,706,344 - Psyr_3958 0.56 +0.2

Or see this region's nucleotide sequence