Experiment: KB with Palmatine chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_3818 and Psyr_3819 are separated by 56 nucleotides Psyr_3819 and Psyr_3820 are separated by 443 nucleotides
Psyr_3818: Psyr_3818 - conserved hypothetical protein, at 4,543,818 to 4,544,201
_3818
Psyr_3819: Psyr_3819 - Protein of unknown function DUF1349, at 4,544,258 to 4,544,833
_3819
Psyr_3820: Psyr_3820 - conserved domain protein, at 4,545,277 to 4,545,822
_3820
Position (kb) 4544
4545 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4543.325 kb on - strand at 4543.334 kb on + strand at 4543.335 kb on - strand at 4543.335 kb on - strand at 4543.452 kb on + strand at 4543.453 kb on - strand at 4543.528 kb on + strand at 4543.544 kb on + strand at 4543.582 kb on + strand at 4543.643 kb on + strand at 4543.713 kb on + strand at 4543.719 kb on + strand at 4543.719 kb on + strand at 4543.719 kb on + strand at 4543.719 kb on + strand at 4543.719 kb on + strand at 4543.725 kb on + strand at 4543.726 kb on - strand at 4543.729 kb on + strand at 4543.730 kb on - strand at 4543.796 kb on + strand at 4543.796 kb on + strand at 4543.796 kb on + strand at 4543.797 kb on - strand at 4543.797 kb on - strand at 4544.025 kb on + strand, within Psyr_3818 at 4544.025 kb on + strand, within Psyr_3818 at 4544.026 kb on - strand, within Psyr_3818 at 4544.026 kb on - strand, within Psyr_3818 at 4544.145 kb on + strand, within Psyr_3818 at 4544.146 kb on - strand, within Psyr_3818 at 4544.147 kb on + strand, within Psyr_3818 at 4544.147 kb on + strand, within Psyr_3818 at 4544.209 kb on + strand at 4544.209 kb on + strand at 4544.210 kb on - strand at 4544.360 kb on + strand, within Psyr_3819 at 4544.360 kb on + strand, within Psyr_3819 at 4544.360 kb on + strand, within Psyr_3819 at 4544.361 kb on - strand, within Psyr_3819 at 4544.361 kb on - strand, within Psyr_3819 at 4544.361 kb on - strand, within Psyr_3819 at 4544.361 kb on - strand, within Psyr_3819 at 4544.361 kb on - strand, within Psyr_3819 at 4544.365 kb on + strand, within Psyr_3819 at 4544.365 kb on + strand, within Psyr_3819 at 4544.365 kb on + strand, within Psyr_3819 at 4544.366 kb on - strand, within Psyr_3819 at 4544.366 kb on - strand, within Psyr_3819 at 4544.368 kb on - strand, within Psyr_3819 at 4544.368 kb on - strand, within Psyr_3819 at 4544.444 kb on + strand, within Psyr_3819 at 4544.498 kb on + strand, within Psyr_3819 at 4544.498 kb on + strand, within Psyr_3819 at 4544.499 kb on - strand, within Psyr_3819 at 4544.531 kb on + strand, within Psyr_3819 at 4544.629 kb on - strand, within Psyr_3819 at 4544.629 kb on - strand, within Psyr_3819 at 4544.629 kb on - strand, within Psyr_3819 at 4544.877 kb on + strand at 4544.877 kb on + strand at 4544.877 kb on + strand at 4544.878 kb on - strand at 4544.878 kb on - strand at 4544.878 kb on - strand at 4544.885 kb on - strand at 4544.895 kb on - strand at 4544.908 kb on + strand at 4544.909 kb on - strand at 4544.909 kb on - strand at 4544.990 kb on - strand at 4545.129 kb on + strand at 4545.129 kb on + strand at 4545.130 kb on - strand at 4545.140 kb on + strand at 4545.141 kb on - strand at 4545.141 kb on - strand at 4545.553 kb on + strand, within Psyr_3820 at 4545.554 kb on - strand, within Psyr_3820
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM remove 4,543,325 - +0.6 4,543,334 + -0.4 4,543,335 - +0.6 4,543,335 - +1.0 4,543,452 + -1.0 4,543,453 - -2.5 4,543,528 + +0.7 4,543,544 + -2.6 4,543,582 + +0.9 4,543,643 + +0.6 4,543,713 + +0.9 4,543,719 + -1.7 4,543,719 + +0.2 4,543,719 + +0.1 4,543,719 + +1.8 4,543,719 + +0.5 4,543,725 + -0.1 4,543,726 - +0.6 4,543,729 + -1.2 4,543,730 - +0.6 4,543,796 + +0.4 4,543,796 + -0.8 4,543,796 + -0.5 4,543,797 - -0.4 4,543,797 - +1.2 4,544,025 + Psyr_3818 0.54 -1.6 4,544,025 + Psyr_3818 0.54 -0.1 4,544,026 - Psyr_3818 0.54 -0.4 4,544,026 - Psyr_3818 0.54 -1.6 4,544,145 + Psyr_3818 0.85 +0.5 4,544,146 - Psyr_3818 0.85 +0.0 4,544,147 + Psyr_3818 0.86 +1.3 4,544,147 + Psyr_3818 0.86 +0.9 4,544,209 + +0.7 4,544,209 + +0.5 4,544,210 - -1.0 4,544,360 + Psyr_3819 0.18 +0.3 4,544,360 + Psyr_3819 0.18 +0.4 4,544,360 + Psyr_3819 0.18 -0.1 4,544,361 - Psyr_3819 0.18 +0.8 4,544,361 - Psyr_3819 0.18 +0.6 4,544,361 - Psyr_3819 0.18 -0.4 4,544,361 - Psyr_3819 0.18 -0.4 4,544,361 - Psyr_3819 0.18 +0.3 4,544,365 + Psyr_3819 0.19 +1.5 4,544,365 + Psyr_3819 0.19 +0.5 4,544,365 + Psyr_3819 0.19 +0.3 4,544,366 - Psyr_3819 0.19 -0.1 4,544,366 - Psyr_3819 0.19 -1.6 4,544,368 - Psyr_3819 0.19 -1.2 4,544,368 - Psyr_3819 0.19 -2.4 4,544,444 + Psyr_3819 0.32 -0.6 4,544,498 + Psyr_3819 0.42 -0.4 4,544,498 + Psyr_3819 0.42 -2.1 4,544,499 - Psyr_3819 0.42 +0.1 4,544,531 + Psyr_3819 0.47 +1.2 4,544,629 - Psyr_3819 0.64 +0.0 4,544,629 - Psyr_3819 0.64 -0.4 4,544,629 - Psyr_3819 0.64 +0.1 4,544,877 + -0.2 4,544,877 + -1.6 4,544,877 + +0.4 4,544,878 - -0.5 4,544,878 - -0.6 4,544,878 - +0.7 4,544,885 - +0.5 4,544,895 - +0.1 4,544,908 + +2.0 4,544,909 - -0.9 4,544,909 - -0.5 4,544,990 - -0.7 4,545,129 + -0.4 4,545,129 + +0.4 4,545,130 - -1.9 4,545,140 + -1.6 4,545,141 - -0.8 4,545,141 - -0.8 4,545,553 + Psyr_3820 0.51 +1.5 4,545,554 - Psyr_3820 0.51 +0.9
Or see this region's nucleotide sequence