Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3620

Experiment: KB with Palmatine chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3619 and Psyr_3620 are separated by 69 nucleotidesPsyr_3620 and Psyr_3621 are separated by 135 nucleotides Psyr_3619: Psyr_3619 - Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase, N-terminal, at 4,303,040 to 4,304,713 _3619 Psyr_3620: Psyr_3620 - hypothetical protein, at 4,304,783 to 4,305,031 _3620 Psyr_3621: Psyr_3621 - conserved hypothetical protein, at 4,305,167 to 4,305,928 _3621 Position (kb) 4304 4305 4306Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4304.846 kb on - strand, within Psyr_3620at 4304.895 kb on - strand, within Psyr_3620at 4304.931 kb on - strand, within Psyr_3620at 4304.931 kb on - strand, within Psyr_3620at 4304.942 kb on - strand, within Psyr_3620at 4305.077 kb on + strandat 4305.164 kb on + strandat 4305.164 kb on + strandat 4305.164 kb on + strandat 4305.165 kb on - strandat 4305.330 kb on + strand, within Psyr_3621at 4305.331 kb on - strand, within Psyr_3621at 4305.492 kb on + strand, within Psyr_3621at 4305.492 kb on + strand, within Psyr_3621at 4305.493 kb on - strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.564 kb on + strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.565 kb on - strand, within Psyr_3621at 4305.762 kb on + strand, within Psyr_3621at 4305.762 kb on + strand, within Psyr_3621at 4305.841 kb on - strand, within Psyr_3621at 4305.906 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM
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4,304,846 - Psyr_3620 0.25 +1.2
4,304,895 - Psyr_3620 0.45 +0.2
4,304,931 - Psyr_3620 0.59 -0.7
4,304,931 - Psyr_3620 0.59 +2.8
4,304,942 - Psyr_3620 0.64 +0.4
4,305,077 + -1.0
4,305,164 + -0.5
4,305,164 + +1.1
4,305,164 + -0.2
4,305,165 - +1.2
4,305,330 + Psyr_3621 0.21 -0.9
4,305,331 - Psyr_3621 0.22 +0.4
4,305,492 + Psyr_3621 0.43 -0.6
4,305,492 + Psyr_3621 0.43 -1.1
4,305,493 - Psyr_3621 0.43 +1.2
4,305,564 + Psyr_3621 0.52 +0.2
4,305,564 + Psyr_3621 0.52 -0.8
4,305,564 + Psyr_3621 0.52 -1.0
4,305,564 + Psyr_3621 0.52 -2.3
4,305,564 + Psyr_3621 0.52 +0.1
4,305,564 + Psyr_3621 0.52 +3.8
4,305,564 + Psyr_3621 0.52 -1.7
4,305,564 + Psyr_3621 0.52 -1.7
4,305,565 - Psyr_3621 0.52 +1.0
4,305,565 - Psyr_3621 0.52 +0.2
4,305,565 - Psyr_3621 0.52 -0.8
4,305,565 - Psyr_3621 0.52 -0.3
4,305,565 - Psyr_3621 0.52 -1.4
4,305,565 - Psyr_3621 0.52 -0.7
4,305,565 - Psyr_3621 0.52 -0.5
4,305,565 - Psyr_3621 0.52 +0.6
4,305,565 - Psyr_3621 0.52 -0.3
4,305,565 - Psyr_3621 0.52 +1.6
4,305,565 - Psyr_3621 0.52 -1.7
4,305,565 - Psyr_3621 0.52 +3.5
4,305,565 - Psyr_3621 0.52 -0.7
4,305,565 - Psyr_3621 0.52 -0.2
4,305,565 - Psyr_3621 0.52 +0.2
4,305,565 - Psyr_3621 0.52 -0.4
4,305,762 + Psyr_3621 0.78 -2.3
4,305,762 + Psyr_3621 0.78 -1.6
4,305,841 - Psyr_3621 0.88 +0.2
4,305,906 - +1.9

Or see this region's nucleotide sequence