Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3473

Experiment: KB with Palmatine chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3472 and Psyr_3473 are separated by 10 nucleotidesPsyr_3473 and Psyr_3474 are separated by 13 nucleotidesPsyr_3474 and Psyr_3475 are separated by 84 nucleotides Psyr_3472: Psyr_3472 - Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase, at 4,142,461 to 4,143,705 _3472 Psyr_3473: Psyr_3473 - Flagellar P-ring protein, at 4,143,716 to 4,144,825 _3473 Psyr_3474: Psyr_3474 - Flagellar L-ring protein, at 4,144,839 to 4,145,552 _3474 Psyr_3475: Psyr_3475 - Flagellar basal body rod protein:Protein of unknown function DUF1078, at 4,145,637 to 4,146,425 _3475 Position (kb) 4143 4144 4145Strain fitness (log2 ratio) -2 -1 0 1 2at 4142.802 kb on + strand, within Psyr_3472at 4143.008 kb on + strand, within Psyr_3472at 4143.008 kb on + strand, within Psyr_3472at 4143.008 kb on + strand, within Psyr_3472at 4143.008 kb on + strand, within Psyr_3472at 4143.008 kb on + strand, within Psyr_3472at 4143.009 kb on - strand, within Psyr_3472at 4143.009 kb on - strand, within Psyr_3472at 4143.063 kb on + strand, within Psyr_3472at 4143.348 kb on + strand, within Psyr_3472at 4143.349 kb on - strand, within Psyr_3472at 4143.464 kb on + strand, within Psyr_3472at 4143.464 kb on + strand, within Psyr_3472at 4143.464 kb on + strand, within Psyr_3472at 4143.464 kb on + strand, within Psyr_3472at 4143.464 kb on + strand, within Psyr_3472at 4143.464 kb on + strand, within Psyr_3472at 4143.464 kb on + strand, within Psyr_3472at 4143.464 kb on + strand, within Psyr_3472at 4143.464 kb on + strand, within Psyr_3472at 4143.464 kb on + strand, within Psyr_3472at 4143.465 kb on - strand, within Psyr_3472at 4143.465 kb on - strand, within Psyr_3472at 4143.465 kb on - strand, within Psyr_3472at 4143.465 kb on - strand, within Psyr_3472at 4143.465 kb on - strand, within Psyr_3472at 4143.465 kb on - strand, within Psyr_3472at 4143.465 kb on - strand, within Psyr_3472at 4143.465 kb on - strand, within Psyr_3472at 4143.465 kb on - strand, within Psyr_3472at 4143.465 kb on - strand, within Psyr_3472at 4143.465 kb on - strand, within Psyr_3472at 4143.465 kb on - strand, within Psyr_3472at 4143.465 kb on - strand, within Psyr_3472at 4143.465 kb on - strand, within Psyr_3472at 4143.469 kb on - strand, within Psyr_3472at 4143.657 kb on - strandat 4143.903 kb on - strand, within Psyr_3473at 4144.108 kb on - strand, within Psyr_3473at 4144.261 kb on + strand, within Psyr_3473at 4144.413 kb on + strand, within Psyr_3473at 4144.546 kb on - strand, within Psyr_3473at 4144.546 kb on - strand, within Psyr_3473at 4144.546 kb on - strand, within Psyr_3473at 4144.830 kb on - strandat 4144.922 kb on - strand, within Psyr_3474at 4144.922 kb on - strand, within Psyr_3474at 4144.922 kb on - strand, within Psyr_3474at 4144.922 kb on - strand, within Psyr_3474at 4144.925 kb on + strand, within Psyr_3474at 4144.925 kb on + strand, within Psyr_3474at 4144.928 kb on + strand, within Psyr_3474at 4144.928 kb on + strand, within Psyr_3474at 4144.928 kb on + strand, within Psyr_3474at 4144.928 kb on + strand, within Psyr_3474at 4144.928 kb on + strand, within Psyr_3474at 4144.928 kb on + strand, within Psyr_3474at 4144.928 kb on + strand, within Psyr_3474at 4144.929 kb on - strand, within Psyr_3474at 4144.929 kb on - strand, within Psyr_3474at 4144.929 kb on - strand, within Psyr_3474at 4144.929 kb on - strand, within Psyr_3474at 4144.949 kb on + strand, within Psyr_3474at 4145.052 kb on + strand, within Psyr_3474at 4145.164 kb on + strand, within Psyr_3474at 4145.301 kb on - strand, within Psyr_3474at 4145.386 kb on + strand, within Psyr_3474at 4145.386 kb on + strand, within Psyr_3474at 4145.386 kb on + strand, within Psyr_3474at 4145.387 kb on - strand, within Psyr_3474at 4145.387 kb on - strand, within Psyr_3474at 4145.387 kb on - strand, within Psyr_3474at 4145.387 kb on - strand, within Psyr_3474at 4145.423 kb on + strand, within Psyr_3474at 4145.423 kb on + strand, within Psyr_3474at 4145.423 kb on + strand, within Psyr_3474at 4145.444 kb on - strand, within Psyr_3474at 4145.540 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM
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4,142,802 + Psyr_3472 0.27 +2.5
4,143,008 + Psyr_3472 0.44 -2.1
4,143,008 + Psyr_3472 0.44 +0.1
4,143,008 + Psyr_3472 0.44 +0.7
4,143,008 + Psyr_3472 0.44 -1.6
4,143,008 + Psyr_3472 0.44 +0.2
4,143,009 - Psyr_3472 0.44 +2.1
4,143,009 - Psyr_3472 0.44 -2.2
4,143,063 + Psyr_3472 0.48 -1.0
4,143,348 + Psyr_3472 0.71 +0.4
4,143,349 - Psyr_3472 0.71 -0.1
4,143,464 + Psyr_3472 0.81 -2.0
4,143,464 + Psyr_3472 0.81 +1.2
4,143,464 + Psyr_3472 0.81 +0.4
4,143,464 + Psyr_3472 0.81 -0.1
4,143,464 + Psyr_3472 0.81 +0.6
4,143,464 + Psyr_3472 0.81 +0.5
4,143,464 + Psyr_3472 0.81 +1.6
4,143,464 + Psyr_3472 0.81 +0.8
4,143,464 + Psyr_3472 0.81 -0.7
4,143,464 + Psyr_3472 0.81 +2.2
4,143,465 - Psyr_3472 0.81 -2.3
4,143,465 - Psyr_3472 0.81 +0.5
4,143,465 - Psyr_3472 0.81 -0.2
4,143,465 - Psyr_3472 0.81 +0.2
4,143,465 - Psyr_3472 0.81 -0.4
4,143,465 - Psyr_3472 0.81 -2.5
4,143,465 - Psyr_3472 0.81 +1.3
4,143,465 - Psyr_3472 0.81 -0.5
4,143,465 - Psyr_3472 0.81 -1.5
4,143,465 - Psyr_3472 0.81 +1.0
4,143,465 - Psyr_3472 0.81 +1.1
4,143,465 - Psyr_3472 0.81 +0.3
4,143,465 - Psyr_3472 0.81 +0.3
4,143,465 - Psyr_3472 0.81 +1.1
4,143,469 - Psyr_3472 0.81 +2.3
4,143,657 - -1.9
4,143,903 - Psyr_3473 0.17 -0.2
4,144,108 - Psyr_3473 0.35 +0.7
4,144,261 + Psyr_3473 0.49 -2.6
4,144,413 + Psyr_3473 0.63 +0.6
4,144,546 - Psyr_3473 0.75 +0.0
4,144,546 - Psyr_3473 0.75 -0.1
4,144,546 - Psyr_3473 0.75 +1.7
4,144,830 - -0.8
4,144,922 - Psyr_3474 0.12 +1.9
4,144,922 - Psyr_3474 0.12 +1.1
4,144,922 - Psyr_3474 0.12 +0.2
4,144,922 - Psyr_3474 0.12 -1.3
4,144,925 + Psyr_3474 0.12 +1.0
4,144,925 + Psyr_3474 0.12 +0.8
4,144,928 + Psyr_3474 0.12 -1.0
4,144,928 + Psyr_3474 0.12 -0.2
4,144,928 + Psyr_3474 0.12 +2.6
4,144,928 + Psyr_3474 0.12 +1.2
4,144,928 + Psyr_3474 0.12 +0.7
4,144,928 + Psyr_3474 0.12 -0.1
4,144,928 + Psyr_3474 0.12 -0.6
4,144,929 - Psyr_3474 0.13 +1.1
4,144,929 - Psyr_3474 0.13 +1.0
4,144,929 - Psyr_3474 0.13 +1.2
4,144,929 - Psyr_3474 0.13 +2.1
4,144,949 + Psyr_3474 0.15 +1.2
4,145,052 + Psyr_3474 0.30 -0.2
4,145,164 + Psyr_3474 0.46 +1.5
4,145,301 - Psyr_3474 0.65 -0.4
4,145,386 + Psyr_3474 0.77 -0.1
4,145,386 + Psyr_3474 0.77 +0.2
4,145,386 + Psyr_3474 0.77 -1.5
4,145,387 - Psyr_3474 0.77 -0.4
4,145,387 - Psyr_3474 0.77 +0.8
4,145,387 - Psyr_3474 0.77 +1.3
4,145,387 - Psyr_3474 0.77 +0.2
4,145,423 + Psyr_3474 0.82 +0.9
4,145,423 + Psyr_3474 0.82 -1.6
4,145,423 + Psyr_3474 0.82 -0.2
4,145,444 - Psyr_3474 0.85 +0.2
4,145,540 + -0.5

Or see this region's nucleotide sequence