Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1150

Experiment: KB with Palmatine chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1149 and Psyr_1150 are separated by 166 nucleotidesPsyr_1150 and Psyr_1151 are separated by 107 nucleotides Psyr_1149: Psyr_1149 - conserved hypothetical protein, at 1,300,228 to 1,301,220 _1149 Psyr_1150: Psyr_1150 - chemotaxis sensory transducer, at 1,301,387 to 1,303,042 _1150 Psyr_1151: Psyr_1151 - cyclohexadienyl dehydratase, at 1,303,150 to 1,303,941 _1151 Position (kb) 1301 1302 1303 1304Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1300.412 kb on + strand, within Psyr_1149at 1300.412 kb on + strand, within Psyr_1149at 1300.413 kb on - strand, within Psyr_1149at 1300.413 kb on - strand, within Psyr_1149at 1300.413 kb on - strand, within Psyr_1149at 1300.454 kb on + strand, within Psyr_1149at 1300.454 kb on + strand, within Psyr_1149at 1300.454 kb on + strand, within Psyr_1149at 1300.575 kb on - strand, within Psyr_1149at 1300.575 kb on - strand, within Psyr_1149at 1300.593 kb on - strand, within Psyr_1149at 1300.682 kb on + strand, within Psyr_1149at 1300.683 kb on - strand, within Psyr_1149at 1300.756 kb on + strand, within Psyr_1149at 1300.862 kb on + strand, within Psyr_1149at 1300.862 kb on + strand, within Psyr_1149at 1300.862 kb on + strand, within Psyr_1149at 1300.862 kb on + strand, within Psyr_1149at 1300.862 kb on + strand, within Psyr_1149at 1300.862 kb on + strand, within Psyr_1149at 1300.863 kb on - strand, within Psyr_1149at 1300.863 kb on - strand, within Psyr_1149at 1300.863 kb on - strand, within Psyr_1149at 1300.863 kb on - strand, within Psyr_1149at 1300.863 kb on - strand, within Psyr_1149at 1300.863 kb on - strand, within Psyr_1149at 1300.982 kb on + strand, within Psyr_1149at 1301.115 kb on + strand, within Psyr_1149at 1301.115 kb on + strand, within Psyr_1149at 1301.115 kb on + strand, within Psyr_1149at 1301.138 kb on + strandat 1301.139 kb on - strandat 1301.235 kb on + strandat 1301.235 kb on + strandat 1301.235 kb on + strandat 1301.235 kb on + strandat 1301.236 kb on - strandat 1301.236 kb on - strandat 1301.236 kb on - strandat 1301.236 kb on - strandat 1301.236 kb on - strandat 1301.236 kb on - strandat 1301.236 kb on - strandat 1301.254 kb on + strandat 1301.255 kb on - strandat 1301.265 kb on + strandat 1301.266 kb on - strandat 1301.284 kb on + strandat 1301.284 kb on + strandat 1301.284 kb on + strandat 1301.284 kb on + strandat 1301.284 kb on + strandat 1301.285 kb on - strandat 1301.322 kb on + strandat 1301.885 kb on - strand, within Psyr_1150at 1302.393 kb on - strand, within Psyr_1150at 1302.393 kb on - strand, within Psyr_1150at 1302.393 kb on - strand, within Psyr_1150at 1302.393 kb on - strand, within Psyr_1150at 1302.584 kb on - strand, within Psyr_1150at 1302.660 kb on + strand, within Psyr_1150at 1302.660 kb on + strand, within Psyr_1150at 1302.661 kb on - strand, within Psyr_1150at 1302.815 kb on + strand, within Psyr_1150at 1302.816 kb on - strand, within Psyr_1150at 1302.820 kb on + strand, within Psyr_1150at 1302.821 kb on - strand, within Psyr_1150at 1302.821 kb on - strand, within Psyr_1150at 1302.891 kb on + strandat 1302.892 kb on - strandat 1302.892 kb on - strandat 1302.955 kb on + strandat 1302.955 kb on + strandat 1302.956 kb on - strandat 1302.980 kb on - strandat 1302.980 kb on - strandat 1302.980 kb on - strandat 1303.064 kb on - strandat 1303.064 kb on - strandat 1303.081 kb on + strandat 1303.082 kb on - strandat 1303.098 kb on + strandat 1303.098 kb on + strandat 1303.098 kb on + strandat 1303.098 kb on + strandat 1303.098 kb on + strandat 1303.098 kb on + strandat 1303.098 kb on + strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.099 kb on - strandat 1303.126 kb on + strandat 1303.137 kb on + strandat 1303.141 kb on + strandat 1303.142 kb on - strandat 1303.238 kb on + strand, within Psyr_1151at 1303.238 kb on + strand, within Psyr_1151at 1303.238 kb on + strand, within Psyr_1151at 1303.238 kb on + strand, within Psyr_1151at 1303.238 kb on + strand, within Psyr_1151at 1303.238 kb on + strand, within Psyr_1151at 1303.238 kb on + strand, within Psyr_1151at 1303.239 kb on - strand, within Psyr_1151at 1303.239 kb on - strand, within Psyr_1151at 1303.239 kb on - strand, within Psyr_1151at 1303.239 kb on - strand, within Psyr_1151at 1303.239 kb on - strand, within Psyr_1151at 1303.274 kb on + strand, within Psyr_1151at 1303.274 kb on + strand, within Psyr_1151at 1303.274 kb on + strand, within Psyr_1151at 1303.275 kb on - strand, within Psyr_1151at 1303.298 kb on + strand, within Psyr_1151at 1303.346 kb on + strand, within Psyr_1151at 1303.536 kb on - strand, within Psyr_1151at 1303.805 kb on + strand, within Psyr_1151at 1303.805 kb on + strand, within Psyr_1151at 1303.805 kb on + strand, within Psyr_1151at 1303.868 kb on + strandat 1303.868 kb on + strandat 1303.869 kb on - strandat 1303.869 kb on - strandat 1303.869 kb on - strandat 1303.925 kb on + strandat 1303.925 kb on + strandat 1303.925 kb on + strandat 1303.925 kb on + strandat 1303.929 kb on + strandat 1303.929 kb on + strandat 1303.930 kb on - strandat 1303.930 kb on - strandat 1303.930 kb on - strandat 1303.951 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM
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1,300,412 + Psyr_1149 0.19 -0.4
1,300,412 + Psyr_1149 0.19 +0.8
1,300,413 - Psyr_1149 0.19 -1.1
1,300,413 - Psyr_1149 0.19 +1.3
1,300,413 - Psyr_1149 0.19 -1.5
1,300,454 + Psyr_1149 0.23 -0.7
1,300,454 + Psyr_1149 0.23 -1.7
1,300,454 + Psyr_1149 0.23 -1.0
1,300,575 - Psyr_1149 0.35 +3.6
1,300,575 - Psyr_1149 0.35 -0.5
1,300,593 - Psyr_1149 0.37 +0.5
1,300,682 + Psyr_1149 0.46 -1.3
1,300,683 - Psyr_1149 0.46 -0.5
1,300,756 + Psyr_1149 0.53 +1.3
1,300,862 + Psyr_1149 0.64 +4.6
1,300,862 + Psyr_1149 0.64 -0.8
1,300,862 + Psyr_1149 0.64 -0.2
1,300,862 + Psyr_1149 0.64 -0.2
1,300,862 + Psyr_1149 0.64 +0.8
1,300,862 + Psyr_1149 0.64 +3.0
1,300,863 - Psyr_1149 0.64 -1.4
1,300,863 - Psyr_1149 0.64 -0.3
1,300,863 - Psyr_1149 0.64 -1.2
1,300,863 - Psyr_1149 0.64 -1.6
1,300,863 - Psyr_1149 0.64 -1.1
1,300,863 - Psyr_1149 0.64 -1.7
1,300,982 + Psyr_1149 0.76 -0.1
1,301,115 + Psyr_1149 0.89 +2.3
1,301,115 + Psyr_1149 0.89 +0.3
1,301,115 + Psyr_1149 0.89 -0.2
1,301,138 + -0.5
1,301,139 - +0.0
1,301,235 + -0.6
1,301,235 + +0.3
1,301,235 + +0.9
1,301,235 + +2.3
1,301,236 - -0.5
1,301,236 - -1.0
1,301,236 - -1.2
1,301,236 - +0.3
1,301,236 - -0.1
1,301,236 - -1.7
1,301,236 - -0.3
1,301,254 + +0.1
1,301,255 - +3.3
1,301,265 + -0.8
1,301,266 - +0.9
1,301,284 + +0.1
1,301,284 + -0.9
1,301,284 + +0.5
1,301,284 + +1.9
1,301,284 + -1.0
1,301,285 - -0.8
1,301,322 + +0.3
1,301,885 - Psyr_1150 0.30 -3.0
1,302,393 - Psyr_1150 0.61 -1.4
1,302,393 - Psyr_1150 0.61 +0.8
1,302,393 - Psyr_1150 0.61 +1.1
1,302,393 - Psyr_1150 0.61 +0.0
1,302,584 - Psyr_1150 0.72 -1.0
1,302,660 + Psyr_1150 0.77 -0.4
1,302,660 + Psyr_1150 0.77 -0.7
1,302,661 - Psyr_1150 0.77 +2.3
1,302,815 + Psyr_1150 0.86 -1.5
1,302,816 - Psyr_1150 0.86 +0.6
1,302,820 + Psyr_1150 0.87 -1.1
1,302,821 - Psyr_1150 0.87 -0.6
1,302,821 - Psyr_1150 0.87 -0.2
1,302,891 + +1.1
1,302,892 - +1.3
1,302,892 - -0.3
1,302,955 + +0.0
1,302,955 + +0.1
1,302,956 - +1.0
1,302,980 - +1.0
1,302,980 - -0.6
1,302,980 - -1.5
1,303,064 - -0.9
1,303,064 - -3.1
1,303,081 + -1.4
1,303,082 - -1.3
1,303,098 + +1.4
1,303,098 + +1.4
1,303,098 + -0.7
1,303,098 + -0.9
1,303,098 + +0.1
1,303,098 + -1.5
1,303,098 + -0.4
1,303,099 - -0.1
1,303,099 - -0.9
1,303,099 - -1.6
1,303,099 - -0.3
1,303,099 - +0.9
1,303,099 - +0.9
1,303,099 - -0.5
1,303,126 + +0.9
1,303,137 + -1.5
1,303,141 + -0.4
1,303,142 - +0.6
1,303,238 + Psyr_1151 0.11 +0.0
1,303,238 + Psyr_1151 0.11 -1.6
1,303,238 + Psyr_1151 0.11 -1.3
1,303,238 + Psyr_1151 0.11 -0.6
1,303,238 + Psyr_1151 0.11 -0.0
1,303,238 + Psyr_1151 0.11 +2.3
1,303,238 + Psyr_1151 0.11 -1.2
1,303,239 - Psyr_1151 0.11 +0.1
1,303,239 - Psyr_1151 0.11 +0.6
1,303,239 - Psyr_1151 0.11 -0.2
1,303,239 - Psyr_1151 0.11 +1.8
1,303,239 - Psyr_1151 0.11 -2.5
1,303,274 + Psyr_1151 0.16 -0.9
1,303,274 + Psyr_1151 0.16 +0.9
1,303,274 + Psyr_1151 0.16 -0.3
1,303,275 - Psyr_1151 0.16 -1.2
1,303,298 + Psyr_1151 0.19 -0.3
1,303,346 + Psyr_1151 0.25 -0.2
1,303,536 - Psyr_1151 0.49 -0.8
1,303,805 + Psyr_1151 0.83 -2.4
1,303,805 + Psyr_1151 0.83 +1.3
1,303,805 + Psyr_1151 0.83 +0.1
1,303,868 + +0.2
1,303,868 + -0.5
1,303,869 - +0.3
1,303,869 - -2.3
1,303,869 - +1.3
1,303,925 + -2.2
1,303,925 + -0.0
1,303,925 + +1.7
1,303,925 + +0.1
1,303,929 + -1.1
1,303,929 + -1.4
1,303,930 - -2.8
1,303,930 - -1.8
1,303,930 - -0.1
1,303,951 + +0.8

Or see this region's nucleotide sequence