Experiment: KB with Palmatine chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1004 and Psyr_1005 are separated by 106 nucleotides Psyr_1005 and Psyr_1006 are separated by 232 nucleotides
Psyr_1004: Psyr_1004 - nucleoside ABC transporter membrane protein, at 1,138,407 to 1,139,333
_1004
Psyr_1005: Psyr_1005 - OmpA/MotB, at 1,139,440 to 1,140,129
_1005
Psyr_1006: Psyr_1006 - Phospholipid/glycerol acyltransferase, at 1,140,362 to 1,141,267
_1006
Position (kb) 1139
1140
1141 Strain fitness (log2 ratio) -1
0
1
2 at 1138.504 kb on + strand, within Psyr_1004 at 1138.505 kb on - strand, within Psyr_1004 at 1138.840 kb on - strand, within Psyr_1004 at 1139.206 kb on - strand, within Psyr_1004 at 1139.311 kb on - strand at 1139.311 kb on - strand at 1139.311 kb on - strand at 1139.399 kb on + strand at 1139.445 kb on + strand at 1139.446 kb on - strand at 1139.550 kb on + strand, within Psyr_1005 at 1139.551 kb on - strand, within Psyr_1005 at 1139.551 kb on - strand, within Psyr_1005 at 1139.693 kb on - strand, within Psyr_1005 at 1139.836 kb on + strand, within Psyr_1005 at 1139.836 kb on + strand, within Psyr_1005 at 1139.836 kb on + strand, within Psyr_1005 at 1139.837 kb on - strand, within Psyr_1005 at 1139.906 kb on - strand, within Psyr_1005 at 1139.977 kb on + strand, within Psyr_1005 at 1139.977 kb on + strand, within Psyr_1005 at 1139.978 kb on - strand, within Psyr_1005 at 1139.978 kb on - strand, within Psyr_1005 at 1140.124 kb on + strand at 1140.125 kb on - strand at 1140.178 kb on + strand at 1140.178 kb on + strand at 1140.379 kb on - strand at 1140.722 kb on - strand, within Psyr_1006 at 1140.828 kb on + strand, within Psyr_1006 at 1140.828 kb on + strand, within Psyr_1006 at 1140.829 kb on - strand, within Psyr_1006 at 1140.841 kb on - strand, within Psyr_1006 at 1140.938 kb on - strand, within Psyr_1006 at 1140.954 kb on + strand, within Psyr_1006 at 1140.954 kb on + strand, within Psyr_1006 at 1140.955 kb on - strand, within Psyr_1006 at 1140.955 kb on - strand, within Psyr_1006 at 1140.955 kb on - strand, within Psyr_1006 at 1140.955 kb on - strand, within Psyr_1006 at 1140.955 kb on - strand, within Psyr_1006 at 1140.955 kb on - strand, within Psyr_1006 at 1141.006 kb on - strand, within Psyr_1006 at 1141.006 kb on - strand, within Psyr_1006 at 1141.006 kb on - strand, within Psyr_1006 at 1141.006 kb on - strand, within Psyr_1006 at 1141.006 kb on - strand, within Psyr_1006
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM remove 1,138,504 + Psyr_1004 0.10 +0.1 1,138,505 - Psyr_1004 0.11 +1.3 1,138,840 - Psyr_1004 0.47 +1.3 1,139,206 - Psyr_1004 0.86 +1.0 1,139,311 - +1.1 1,139,311 - -0.4 1,139,311 - -0.5 1,139,399 + +0.3 1,139,445 + -0.5 1,139,446 - -1.0 1,139,550 + Psyr_1005 0.16 +0.9 1,139,551 - Psyr_1005 0.16 -1.7 1,139,551 - Psyr_1005 0.16 -1.5 1,139,693 - Psyr_1005 0.37 +0.4 1,139,836 + Psyr_1005 0.57 -1.6 1,139,836 + Psyr_1005 0.57 -1.5 1,139,836 + Psyr_1005 0.57 -0.7 1,139,837 - Psyr_1005 0.58 -0.2 1,139,906 - Psyr_1005 0.68 -0.1 1,139,977 + Psyr_1005 0.78 +1.9 1,139,977 + Psyr_1005 0.78 -0.2 1,139,978 - Psyr_1005 0.78 +1.5 1,139,978 - Psyr_1005 0.78 -0.7 1,140,124 + -0.1 1,140,125 - -1.3 1,140,178 + +0.6 1,140,178 + +0.4 1,140,379 - -0.9 1,140,722 - Psyr_1006 0.40 -1.5 1,140,828 + Psyr_1006 0.51 +0.3 1,140,828 + Psyr_1006 0.51 +0.0 1,140,829 - Psyr_1006 0.52 -0.6 1,140,841 - Psyr_1006 0.53 +0.0 1,140,938 - Psyr_1006 0.64 +0.0 1,140,954 + Psyr_1006 0.65 -0.1 1,140,954 + Psyr_1006 0.65 +1.3 1,140,955 - Psyr_1006 0.65 -1.0 1,140,955 - Psyr_1006 0.65 +0.7 1,140,955 - Psyr_1006 0.65 +0.3 1,140,955 - Psyr_1006 0.65 +0.3 1,140,955 - Psyr_1006 0.65 +0.0 1,140,955 - Psyr_1006 0.65 +0.0 1,141,006 - Psyr_1006 0.71 -0.9 1,141,006 - Psyr_1006 0.71 +0.4 1,141,006 - Psyr_1006 0.71 -1.0 1,141,006 - Psyr_1006 0.71 -1.5 1,141,006 - Psyr_1006 0.71 +0.7
Or see this region's nucleotide sequence