Experiment: KB with Palmatine chloride 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0407 and Psyr_0408 are separated by 4 nucleotides Psyr_0408 and Psyr_0409 are separated by 114 nucleotides Psyr_0409 and Psyr_0410 are separated by 10 nucleotides
Psyr_0407: Psyr_0407 - type II and III secretion system protein:NolW-like protein:NolW-like protein, at 436,404 to 438,560
_0407
Psyr_0408: Psyr_0408 - shikimate kinase, at 438,565 to 439,083
_0408
Psyr_0409: Psyr_0409 - 3-dehydroquinate synthase, at 439,198 to 440,301
_0409
Psyr_0410: Psyr_0410 - conserved hypothetical protein, at 440,312 to 441,934
_0410
Position (kb) 439
440
441 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 438.294 kb on + strand, within Psyr_0407 at 438.410 kb on + strand at 438.410 kb on + strand at 438.445 kb on + strand at 438.445 kb on + strand at 438.445 kb on + strand at 438.445 kb on + strand at 438.445 kb on + strand at 438.450 kb on + strand at 438.450 kb on + strand at 439.103 kb on + strand at 440.317 kb on + strand at 440.318 kb on - strand at 440.318 kb on - strand at 440.318 kb on - strand at 440.318 kb on - strand at 440.318 kb on - strand at 440.693 kb on + strand, within Psyr_0410 at 440.693 kb on + strand, within Psyr_0410 at 440.693 kb on + strand, within Psyr_0410 at 440.787 kb on + strand, within Psyr_0410 at 440.787 kb on + strand, within Psyr_0410 at 440.787 kb on + strand, within Psyr_0410 at 440.787 kb on + strand, within Psyr_0410 at 440.787 kb on + strand, within Psyr_0410 at 440.787 kb on + strand, within Psyr_0410 at 440.787 kb on + strand, within Psyr_0410 at 440.787 kb on + strand, within Psyr_0410 at 440.787 kb on + strand, within Psyr_0410 at 440.787 kb on + strand, within Psyr_0410 at 440.788 kb on - strand, within Psyr_0410 at 440.788 kb on - strand, within Psyr_0410 at 440.788 kb on - strand, within Psyr_0410 at 440.788 kb on - strand, within Psyr_0410 at 440.788 kb on - strand, within Psyr_0410 at 440.788 kb on - strand, within Psyr_0410 at 440.894 kb on + strand, within Psyr_0410 at 440.895 kb on - strand, within Psyr_0410 at 440.895 kb on - strand, within Psyr_0410 at 440.895 kb on - strand, within Psyr_0410 at 440.895 kb on - strand, within Psyr_0410 at 440.918 kb on + strand, within Psyr_0410 at 440.986 kb on + strand, within Psyr_0410 at 441.031 kb on - strand, within Psyr_0410 at 441.121 kb on - strand, within Psyr_0410 at 441.145 kb on - strand, within Psyr_0410
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM remove 438,294 + Psyr_0407 0.88 -0.5 438,410 + +0.0 438,410 + +0.2 438,445 + -0.6 438,445 + +0.6 438,445 + +0.1 438,445 + +1.9 438,445 + -1.1 438,450 + -2.1 438,450 + -0.0 439,103 + +2.0 440,317 + +0.5 440,318 - +1.0 440,318 - -0.2 440,318 - -0.5 440,318 - -0.8 440,318 - +0.4 440,693 + Psyr_0410 0.23 -0.3 440,693 + Psyr_0410 0.23 -1.6 440,693 + Psyr_0410 0.23 -3.2 440,787 + Psyr_0410 0.29 -0.9 440,787 + Psyr_0410 0.29 +0.3 440,787 + Psyr_0410 0.29 +1.2 440,787 + Psyr_0410 0.29 +0.1 440,787 + Psyr_0410 0.29 +0.4 440,787 + Psyr_0410 0.29 +0.8 440,787 + Psyr_0410 0.29 -3.3 440,787 + Psyr_0410 0.29 +1.3 440,787 + Psyr_0410 0.29 -1.5 440,787 + Psyr_0410 0.29 -2.0 440,788 - Psyr_0410 0.29 +0.8 440,788 - Psyr_0410 0.29 -0.3 440,788 - Psyr_0410 0.29 -1.8 440,788 - Psyr_0410 0.29 -1.4 440,788 - Psyr_0410 0.29 -0.1 440,788 - Psyr_0410 0.29 +0.8 440,894 + Psyr_0410 0.36 +1.0 440,895 - Psyr_0410 0.36 +0.3 440,895 - Psyr_0410 0.36 -1.2 440,895 - Psyr_0410 0.36 +0.4 440,895 - Psyr_0410 0.36 +1.0 440,918 + Psyr_0410 0.37 -0.4 440,986 + Psyr_0410 0.42 -2.2 441,031 - Psyr_0410 0.44 -2.4 441,121 - Psyr_0410 0.50 -0.8 441,145 - Psyr_0410 0.51 -2.5
Or see this region's nucleotide sequence