Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0214

Experiment: KB with Palmatine chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0213 and Psyr_0214 are separated by 21 nucleotidesPsyr_0214 and Psyr_0215 are separated by 69 nucleotidesPsyr_0215 and Psyr_0216 are separated by 82 nucleotides Psyr_0213: Psyr_0213 - RNAse PH, at 227,415 to 228,137 _0213 Psyr_0214: Psyr_0214 - conserved hypothetical protein, at 228,159 to 228,527 _0214 Psyr_0215: Psyr_0215 - Exodeoxyribonuclease III xth, at 228,597 to 229,376 _0215 Psyr_0216: Psyr_0216 - orotate phosphoribosyltransferase, at 229,459 to 230,100 _0216 Position (kb) 228 229Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 227.196 kb on - strandat 227.212 kb on - strandat 227.344 kb on + strandat 227.344 kb on + strandat 227.345 kb on - strandat 227.345 kb on - strandat 227.373 kb on + strandat 227.374 kb on - strandat 227.374 kb on - strandat 227.374 kb on - strandat 227.374 kb on - strandat 227.374 kb on - strandat 227.375 kb on + strandat 227.376 kb on - strandat 227.376 kb on - strandat 227.402 kb on - strandat 227.408 kb on - strandat 227.475 kb on + strandat 227.475 kb on + strandat 227.501 kb on - strand, within Psyr_0213at 227.520 kb on - strand, within Psyr_0213at 227.637 kb on - strand, within Psyr_0213at 227.675 kb on + strand, within Psyr_0213at 227.675 kb on + strand, within Psyr_0213at 227.675 kb on + strand, within Psyr_0213at 227.676 kb on - strand, within Psyr_0213at 227.754 kb on + strand, within Psyr_0213at 227.755 kb on - strand, within Psyr_0213at 227.755 kb on - strand, within Psyr_0213at 227.755 kb on - strand, within Psyr_0213at 227.795 kb on + strand, within Psyr_0213at 227.796 kb on - strand, within Psyr_0213at 227.804 kb on + strand, within Psyr_0213at 227.805 kb on - strand, within Psyr_0213at 227.805 kb on - strand, within Psyr_0213at 227.805 kb on - strand, within Psyr_0213at 227.805 kb on - strand, within Psyr_0213at 227.919 kb on + strand, within Psyr_0213at 227.919 kb on + strand, within Psyr_0213at 227.919 kb on + strand, within Psyr_0213at 227.919 kb on + strand, within Psyr_0213at 227.920 kb on - strand, within Psyr_0213at 227.920 kb on - strand, within Psyr_0213at 227.920 kb on - strand, within Psyr_0213at 227.950 kb on - strand, within Psyr_0213at 228.284 kb on + strand, within Psyr_0214at 228.492 kb on + strandat 228.492 kb on + strandat 228.492 kb on + strandat 228.525 kb on + strandat 228.525 kb on + strandat 228.525 kb on + strandat 228.525 kb on + strandat 228.525 kb on + strandat 228.525 kb on + strandat 228.525 kb on + strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.526 kb on - strandat 228.602 kb on + strandat 228.602 kb on + strandat 228.602 kb on + strandat 228.603 kb on - strandat 228.603 kb on - strandat 228.603 kb on - strandat 228.776 kb on - strand, within Psyr_0215at 228.818 kb on - strand, within Psyr_0215at 228.928 kb on + strand, within Psyr_0215at 228.928 kb on + strand, within Psyr_0215at 228.929 kb on - strand, within Psyr_0215at 228.929 kb on - strand, within Psyr_0215at 228.944 kb on - strand, within Psyr_0215at 228.949 kb on + strand, within Psyr_0215at 228.950 kb on - strand, within Psyr_0215at 228.950 kb on - strand, within Psyr_0215at 228.950 kb on - strand, within Psyr_0215at 228.950 kb on - strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.982 kb on + strand, within Psyr_0215at 228.983 kb on - strand, within Psyr_0215at 228.983 kb on - strand, within Psyr_0215at 228.983 kb on - strand, within Psyr_0215at 228.983 kb on - strand, within Psyr_0215at 228.983 kb on - strand, within Psyr_0215at 228.983 kb on - strand, within Psyr_0215at 228.983 kb on - strand, within Psyr_0215at 228.983 kb on - strand, within Psyr_0215at 228.983 kb on - strand, within Psyr_0215at 228.983 kb on - strand, within Psyr_0215at 229.097 kb on - strand, within Psyr_0215at 229.165 kb on + strand, within Psyr_0215at 229.211 kb on - strand, within Psyr_0215at 229.219 kb on + strand, within Psyr_0215at 229.219 kb on + strand, within Psyr_0215at 229.220 kb on - strand, within Psyr_0215at 229.278 kb on + strand, within Psyr_0215at 229.353 kb on + strandat 229.354 kb on - strandat 229.354 kb on - strandat 229.354 kb on - strandat 229.376 kb on + strandat 229.403 kb on + strandat 229.403 kb on + strandat 229.404 kb on - strandat 229.423 kb on + strandat 229.423 kb on + strandat 229.423 kb on + strandat 229.423 kb on + strandat 229.423 kb on + strandat 229.423 kb on + strandat 229.423 kb on + strandat 229.423 kb on + strandat 229.427 kb on + strandat 229.442 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM
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227,196 - +1.3
227,212 - -0.7
227,344 + +0.6
227,344 + +0.3
227,345 - +0.8
227,345 - -1.0
227,373 + +0.0
227,374 - +0.9
227,374 - +0.3
227,374 - +1.7
227,374 - -2.8
227,374 - -0.9
227,375 + +0.4
227,376 - -0.2
227,376 - +0.7
227,402 - -0.3
227,408 - -0.8
227,475 + +0.3
227,475 + +0.6
227,501 - Psyr_0213 0.12 -0.7
227,520 - Psyr_0213 0.15 -1.4
227,637 - Psyr_0213 0.31 +0.8
227,675 + Psyr_0213 0.36 +0.3
227,675 + Psyr_0213 0.36 -0.8
227,675 + Psyr_0213 0.36 -2.6
227,676 - Psyr_0213 0.36 +0.7
227,754 + Psyr_0213 0.47 +0.1
227,755 - Psyr_0213 0.47 +2.3
227,755 - Psyr_0213 0.47 +0.3
227,755 - Psyr_0213 0.47 +0.0
227,795 + Psyr_0213 0.53 +0.4
227,796 - Psyr_0213 0.53 +0.9
227,804 + Psyr_0213 0.54 -2.3
227,805 - Psyr_0213 0.54 -0.3
227,805 - Psyr_0213 0.54 +0.6
227,805 - Psyr_0213 0.54 -0.8
227,805 - Psyr_0213 0.54 -1.0
227,919 + Psyr_0213 0.70 +0.0
227,919 + Psyr_0213 0.70 -0.1
227,919 + Psyr_0213 0.70 -0.4
227,919 + Psyr_0213 0.70 -1.2
227,920 - Psyr_0213 0.70 +0.3
227,920 - Psyr_0213 0.70 -1.7
227,920 - Psyr_0213 0.70 +1.5
227,950 - Psyr_0213 0.74 -2.0
228,284 + Psyr_0214 0.34 -1.5
228,492 + -1.0
228,492 + -0.8
228,492 + -1.3
228,525 + -0.6
228,525 + -3.1
228,525 + -1.6
228,525 + -0.2
228,525 + -0.8
228,525 + -0.8
228,525 + -0.3
228,526 - -0.2
228,526 - -0.7
228,526 - +0.3
228,526 - +0.6
228,526 - -2.4
228,526 - -1.9
228,526 - -0.8
228,526 - +1.2
228,526 - -0.7
228,526 - +0.6
228,526 - +0.1
228,526 - -1.5
228,602 + -0.3
228,602 + -0.7
228,602 + +1.1
228,603 - +0.2
228,603 - -0.5
228,603 - +1.6
228,776 - Psyr_0215 0.23 -0.7
228,818 - Psyr_0215 0.28 -2.1
228,928 + Psyr_0215 0.42 -2.2
228,928 + Psyr_0215 0.42 -0.8
228,929 - Psyr_0215 0.43 -3.4
228,929 - Psyr_0215 0.43 +0.6
228,944 - Psyr_0215 0.44 -3.3
228,949 + Psyr_0215 0.45 -0.3
228,950 - Psyr_0215 0.45 -1.4
228,950 - Psyr_0215 0.45 +0.1
228,950 - Psyr_0215 0.45 -0.2
228,950 - Psyr_0215 0.45 +1.3
228,982 + Psyr_0215 0.49 +1.3
228,982 + Psyr_0215 0.49 -1.0
228,982 + Psyr_0215 0.49 +0.6
228,982 + Psyr_0215 0.49 -1.6
228,982 + Psyr_0215 0.49 -1.7
228,982 + Psyr_0215 0.49 -2.3
228,982 + Psyr_0215 0.49 -2.3
228,983 - Psyr_0215 0.49 -1.6
228,983 - Psyr_0215 0.49 -0.3
228,983 - Psyr_0215 0.49 -1.3
228,983 - Psyr_0215 0.49 -1.8
228,983 - Psyr_0215 0.49 +0.5
228,983 - Psyr_0215 0.49 +0.9
228,983 - Psyr_0215 0.49 -1.3
228,983 - Psyr_0215 0.49 -1.8
228,983 - Psyr_0215 0.49 -0.3
228,983 - Psyr_0215 0.49 -1.8
229,097 - Psyr_0215 0.64 -1.3
229,165 + Psyr_0215 0.73 -1.8
229,211 - Psyr_0215 0.79 -1.8
229,219 + Psyr_0215 0.80 -0.3
229,219 + Psyr_0215 0.80 -2.7
229,220 - Psyr_0215 0.80 -2.7
229,278 + Psyr_0215 0.87 -2.1
229,353 + -1.5
229,354 - -0.9
229,354 - -0.7
229,354 - -1.7
229,376 + -1.5
229,403 + -1.0
229,403 + -3.8
229,404 - +4.3
229,423 + -1.1
229,423 + -1.8
229,423 + -1.0
229,423 + -1.9
229,423 + +0.7
229,423 + -0.7
229,423 + -0.1
229,423 + +2.3
229,427 + -0.3
229,442 + -1.2

Or see this region's nucleotide sequence