Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0080

Experiment: KB with Palmatine chloride 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0079 and Psyr_0080 overlap by 8 nucleotidesPsyr_0080 and Psyr_0081 are separated by 200 nucleotides Psyr_0079: Psyr_0079 - conserved hypothetical protein, at 85,222 to 86,475 _0079 Psyr_0080: Psyr_0080 - Protein of unknown function DUF81, at 86,468 to 87,280 _0080 Psyr_0081: Psyr_0081 - ABC transporter, at 87,481 to 88,461 _0081 Position (kb) 86 87 88Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 85.621 kb on + strand, within Psyr_0079at 85.622 kb on - strand, within Psyr_0079at 85.642 kb on + strand, within Psyr_0079at 85.643 kb on - strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.741 kb on + strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.742 kb on - strand, within Psyr_0079at 85.801 kb on + strand, within Psyr_0079at 85.801 kb on + strand, within Psyr_0079at 85.801 kb on + strand, within Psyr_0079at 85.801 kb on + strand, within Psyr_0079at 85.837 kb on + strand, within Psyr_0079at 85.837 kb on + strand, within Psyr_0079at 85.837 kb on + strand, within Psyr_0079at 85.838 kb on - strand, within Psyr_0079at 85.838 kb on - strand, within Psyr_0079at 85.838 kb on - strand, within Psyr_0079at 85.858 kb on + strand, within Psyr_0079at 85.858 kb on + strand, within Psyr_0079at 85.858 kb on + strand, within Psyr_0079at 85.858 kb on + strand, within Psyr_0079at 85.858 kb on + strand, within Psyr_0079at 85.859 kb on - strand, within Psyr_0079at 85.859 kb on - strand, within Psyr_0079at 86.000 kb on + strand, within Psyr_0079at 86.000 kb on + strand, within Psyr_0079at 86.001 kb on - strand, within Psyr_0079at 86.001 kb on - strand, within Psyr_0079at 86.001 kb on - strand, within Psyr_0079at 86.198 kb on + strand, within Psyr_0079at 86.198 kb on + strand, within Psyr_0079at 86.198 kb on + strand, within Psyr_0079at 86.198 kb on + strand, within Psyr_0079at 86.199 kb on - strand, within Psyr_0079at 86.236 kb on + strand, within Psyr_0079at 86.236 kb on + strand, within Psyr_0079at 86.237 kb on - strand, within Psyr_0079at 86.237 kb on - strand, within Psyr_0079at 86.237 kb on - strand, within Psyr_0079at 86.237 kb on - strand, within Psyr_0079at 86.237 kb on - strand, within Psyr_0079at 86.303 kb on - strand, within Psyr_0079at 86.303 kb on - strand, within Psyr_0079at 86.404 kb on + strandat 86.405 kb on - strandat 86.520 kb on + strandat 86.521 kb on - strandat 86.653 kb on - strand, within Psyr_0080at 86.697 kb on - strand, within Psyr_0080at 86.715 kb on + strand, within Psyr_0080at 86.716 kb on - strand, within Psyr_0080at 86.716 kb on - strand, within Psyr_0080at 86.716 kb on - strand, within Psyr_0080at 86.761 kb on + strand, within Psyr_0080at 86.762 kb on - strand, within Psyr_0080at 86.798 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.812 kb on + strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.813 kb on - strand, within Psyr_0080at 86.871 kb on + strand, within Psyr_0080at 87.023 kb on + strand, within Psyr_0080at 87.121 kb on + strand, within Psyr_0080at 87.122 kb on - strand, within Psyr_0080at 87.122 kb on - strand, within Psyr_0080at 87.122 kb on - strand, within Psyr_0080at 87.278 kb on + strandat 87.342 kb on - strandat 87.342 kb on - strandat 87.456 kb on + strandat 87.456 kb on + strandat 87.456 kb on + strandat 87.456 kb on + strandat 87.457 kb on - strandat 87.457 kb on - strandat 87.457 kb on - strandat 87.457 kb on - strandat 87.458 kb on + strandat 87.458 kb on + strandat 87.482 kb on + strandat 87.483 kb on - strandat 87.788 kb on + strand, within Psyr_0081at 87.788 kb on + strand, within Psyr_0081at 87.789 kb on - strand, within Psyr_0081at 88.214 kb on + strand, within Psyr_0081at 88.215 kb on - strand, within Psyr_0081

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Palmatine chloride 10 mM
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85,621 + Psyr_0079 0.32 -2.0
85,622 - Psyr_0079 0.32 +1.1
85,642 + Psyr_0079 0.33 -1.2
85,643 - Psyr_0079 0.34 +0.1
85,741 + Psyr_0079 0.41 +3.2
85,741 + Psyr_0079 0.41 +0.8
85,741 + Psyr_0079 0.41 +3.7
85,741 + Psyr_0079 0.41 -1.8
85,741 + Psyr_0079 0.41 +1.4
85,741 + Psyr_0079 0.41 -0.2
85,741 + Psyr_0079 0.41 +0.5
85,741 + Psyr_0079 0.41 +1.4
85,741 + Psyr_0079 0.41 -0.1
85,741 + Psyr_0079 0.41 -2.6
85,741 + Psyr_0079 0.41 -0.3
85,741 + Psyr_0079 0.41 +1.4
85,741 + Psyr_0079 0.41 +0.6
85,742 - Psyr_0079 0.41 +0.3
85,742 - Psyr_0079 0.41 -1.0
85,742 - Psyr_0079 0.41 -2.4
85,742 - Psyr_0079 0.41 -0.5
85,742 - Psyr_0079 0.41 -0.2
85,742 - Psyr_0079 0.41 +1.1
85,742 - Psyr_0079 0.41 -0.3
85,742 - Psyr_0079 0.41 -2.4
85,801 + Psyr_0079 0.46 -0.6
85,801 + Psyr_0079 0.46 -0.4
85,801 + Psyr_0079 0.46 +0.9
85,801 + Psyr_0079 0.46 -0.1
85,837 + Psyr_0079 0.49 +1.5
85,837 + Psyr_0079 0.49 -1.2
85,837 + Psyr_0079 0.49 -0.1
85,838 - Psyr_0079 0.49 +0.6
85,838 - Psyr_0079 0.49 +3.0
85,838 - Psyr_0079 0.49 +0.5
85,858 + Psyr_0079 0.51 -0.5
85,858 + Psyr_0079 0.51 -0.5
85,858 + Psyr_0079 0.51 -0.3
85,858 + Psyr_0079 0.51 -0.7
85,858 + Psyr_0079 0.51 -1.6
85,859 - Psyr_0079 0.51 +0.9
85,859 - Psyr_0079 0.51 -0.9
86,000 + Psyr_0079 0.62 -0.7
86,000 + Psyr_0079 0.62 +1.0
86,001 - Psyr_0079 0.62 -0.6
86,001 - Psyr_0079 0.62 +2.4
86,001 - Psyr_0079 0.62 -0.2
86,198 + Psyr_0079 0.78 -0.1
86,198 + Psyr_0079 0.78 -1.8
86,198 + Psyr_0079 0.78 +1.7
86,198 + Psyr_0079 0.78 +0.8
86,199 - Psyr_0079 0.78 -0.9
86,236 + Psyr_0079 0.81 -0.8
86,236 + Psyr_0079 0.81 -0.7
86,237 - Psyr_0079 0.81 +0.4
86,237 - Psyr_0079 0.81 -0.3
86,237 - Psyr_0079 0.81 +0.9
86,237 - Psyr_0079 0.81 +0.0
86,237 - Psyr_0079 0.81 +1.1
86,303 - Psyr_0079 0.86 -1.2
86,303 - Psyr_0079 0.86 -2.4
86,404 + +0.8
86,405 - -0.6
86,520 + -1.6
86,521 - -0.4
86,653 - Psyr_0080 0.23 +0.7
86,697 - Psyr_0080 0.28 -0.7
86,715 + Psyr_0080 0.30 +1.4
86,716 - Psyr_0080 0.31 +2.3
86,716 - Psyr_0080 0.31 +1.4
86,716 - Psyr_0080 0.31 +0.7
86,761 + Psyr_0080 0.36 +0.5
86,762 - Psyr_0080 0.36 -0.8
86,798 + Psyr_0080 0.41 +0.4
86,812 + Psyr_0080 0.42 -0.2
86,812 + Psyr_0080 0.42 +1.1
86,812 + Psyr_0080 0.42 +1.2
86,812 + Psyr_0080 0.42 -1.0
86,812 + Psyr_0080 0.42 +0.2
86,812 + Psyr_0080 0.42 +0.7
86,812 + Psyr_0080 0.42 -1.6
86,812 + Psyr_0080 0.42 -0.2
86,812 + Psyr_0080 0.42 +0.2
86,812 + Psyr_0080 0.42 +0.1
86,812 + Psyr_0080 0.42 +2.6
86,812 + Psyr_0080 0.42 -0.7
86,812 + Psyr_0080 0.42 +1.1
86,812 + Psyr_0080 0.42 +0.1
86,812 + Psyr_0080 0.42 -0.9
86,812 + Psyr_0080 0.42 +0.3
86,813 - Psyr_0080 0.42 -1.0
86,813 - Psyr_0080 0.42 +0.2
86,813 - Psyr_0080 0.42 -0.7
86,813 - Psyr_0080 0.42 -0.8
86,813 - Psyr_0080 0.42 -0.6
86,813 - Psyr_0080 0.42 -0.1
86,813 - Psyr_0080 0.42 +4.4
86,813 - Psyr_0080 0.42 -0.7
86,813 - Psyr_0080 0.42 +0.2
86,813 - Psyr_0080 0.42 -2.2
86,813 - Psyr_0080 0.42 +0.6
86,813 - Psyr_0080 0.42 -0.9
86,813 - Psyr_0080 0.42 +0.2
86,813 - Psyr_0080 0.42 +0.6
86,813 - Psyr_0080 0.42 -1.2
86,813 - Psyr_0080 0.42 +0.7
86,813 - Psyr_0080 0.42 +1.4
86,813 - Psyr_0080 0.42 -0.2
86,813 - Psyr_0080 0.42 -1.7
86,813 - Psyr_0080 0.42 -0.6
86,813 - Psyr_0080 0.42 +0.7
86,813 - Psyr_0080 0.42 +0.0
86,813 - Psyr_0080 0.42 -0.4
86,813 - Psyr_0080 0.42 +1.0
86,813 - Psyr_0080 0.42 +0.4
86,813 - Psyr_0080 0.42 +0.3
86,871 + Psyr_0080 0.50 +1.4
87,023 + Psyr_0080 0.68 -0.4
87,121 + Psyr_0080 0.80 -0.4
87,122 - Psyr_0080 0.80 -1.3
87,122 - Psyr_0080 0.80 -0.5
87,122 - Psyr_0080 0.80 -0.8
87,278 + +0.5
87,342 - -1.8
87,342 - -0.6
87,456 + +0.1
87,456 + +0.4
87,456 + -1.6
87,456 + +0.4
87,457 - +1.7
87,457 - +0.7
87,457 - -2.2
87,457 - -0.1
87,458 + +2.4
87,458 + +0.1
87,482 + -1.6
87,483 - -0.7
87,788 + Psyr_0081 0.31 +0.4
87,788 + Psyr_0081 0.31 +1.5
87,789 - Psyr_0081 0.31 +2.2
88,214 + Psyr_0081 0.75 -1.8
88,215 - Psyr_0081 0.75 -1.6

Or see this region's nucleotide sequence