Experiment: Dodecanol and Rhamnolipid (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt cusB and cusA are separated by 11 nucleotides cusA and pheP are separated by 101 nucleotides
b0574: cusB - copper/silver efflux system, membrane fusion protein (NCBI), at 596,702 to 597,925
cusB
b0575: cusA - copper/silver efflux system, membrane component (NCBI), at 597,937 to 601,080
cusA
b0576: pheP - phenylalanine transporter (NCBI), at 601,182 to 602,558
pheP
Position (kb) 597
598
599
600
601
602 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 597.043 kb on + strand, within cusB at 597.043 kb on + strand, within cusB at 597.051 kb on - strand, within cusB at 597.079 kb on - strand, within cusB at 597.084 kb on + strand, within cusB at 597.154 kb on - strand, within cusB at 597.154 kb on - strand, within cusB at 597.157 kb on - strand, within cusB at 597.157 kb on - strand, within cusB at 597.192 kb on + strand, within cusB at 597.246 kb on - strand, within cusB at 597.246 kb on - strand, within cusB at 597.329 kb on - strand, within cusB at 597.439 kb on - strand, within cusB at 597.439 kb on - strand, within cusB at 597.449 kb on - strand, within cusB at 597.518 kb on + strand, within cusB at 597.697 kb on + strand, within cusB at 597.697 kb on + strand, within cusB at 597.780 kb on - strand, within cusB at 597.780 kb on - strand, within cusB at 597.840 kb on - strand at 597.841 kb on - strand at 597.841 kb on - strand at 598.169 kb on + strand at 598.197 kb on + strand at 598.240 kb on + strand at 598.248 kb on - strand at 598.290 kb on + strand, within cusA at 598.331 kb on - strand, within cusA at 598.331 kb on - strand, within cusA at 598.501 kb on - strand, within cusA at 598.530 kb on + strand, within cusA at 598.711 kb on - strand, within cusA at 598.711 kb on - strand, within cusA at 599.120 kb on + strand, within cusA at 599.213 kb on - strand, within cusA at 599.213 kb on - strand, within cusA at 599.243 kb on + strand, within cusA at 599.266 kb on + strand, within cusA at 599.294 kb on + strand, within cusA at 599.333 kb on + strand, within cusA at 599.538 kb on - strand, within cusA at 599.636 kb on - strand, within cusA at 599.657 kb on - strand, within cusA at 599.883 kb on + strand, within cusA at 599.883 kb on + strand, within cusA at 599.891 kb on - strand, within cusA at 599.952 kb on + strand, within cusA at 600.055 kb on + strand, within cusA at 600.063 kb on - strand, within cusA at 600.063 kb on - strand, within cusA at 600.121 kb on + strand, within cusA at 600.163 kb on + strand, within cusA at 600.220 kb on - strand, within cusA at 600.288 kb on - strand, within cusA at 600.426 kb on + strand, within cusA at 600.426 kb on + strand, within cusA at 600.517 kb on - strand, within cusA at 600.517 kb on - strand, within cusA at 600.743 kb on - strand, within cusA at 600.769 kb on - strand at 600.769 kb on - strand at 600.793 kb on - strand at 600.804 kb on - strand at 600.868 kb on + strand at 600.904 kb on - strand at 600.958 kb on - strand at 600.958 kb on - strand at 601.069 kb on - strand at 601.205 kb on + strand at 601.248 kb on + strand at 601.258 kb on + strand at 601.279 kb on - strand at 601.288 kb on - strand at 601.293 kb on - strand at 601.378 kb on + strand, within pheP at 601.441 kb on - strand, within pheP at 601.462 kb on + strand, within pheP at 601.552 kb on + strand, within pheP at 601.616 kb on + strand, within pheP at 601.624 kb on + strand, within pheP at 601.852 kb on + strand, within pheP at 601.852 kb on + strand, within pheP at 601.876 kb on + strand, within pheP at 601.876 kb on + strand at 601.957 kb on + strand, within pheP at 601.987 kb on - strand, within pheP at 601.988 kb on - strand, within pheP
Per-strain Table
Position Strand Gene LocusTag Fraction Dodecanol and Rhamnolipid (C) remove 597,043 + cusB b0574 0.28 -1.2 597,043 + cusB b0574 0.28 +0.4 597,051 - cusB b0574 0.29 -0.2 597,079 - cusB b0574 0.31 +0.9 597,084 + cusB b0574 0.31 -0.9 597,154 - cusB b0574 0.37 +1.3 597,154 - cusB b0574 0.37 +0.2 597,157 - cusB b0574 0.37 +0.4 597,157 - cusB b0574 0.37 -2.2 597,192 + cusB b0574 0.40 +0.3 597,246 - cusB b0574 0.44 +1.1 597,246 - cusB b0574 0.44 +0.0 597,329 - cusB b0574 0.51 +0.2 597,439 - cusB b0574 0.60 +0.6 597,439 - cusB b0574 0.60 -0.3 597,449 - cusB b0574 0.61 +0.2 597,518 + cusB b0574 0.67 +0.9 597,697 + cusB b0574 0.81 +0.5 597,697 + cusB b0574 0.81 -0.4 597,780 - cusB b0574 0.88 +0.6 597,780 - cusB b0574 0.88 -0.6 597,840 - -2.7 597,841 - -3.2 597,841 - +0.2 598,169 + -0.4 598,197 + +1.0 598,240 + -0.8 598,248 - -0.5 598,290 + cusA b0575 0.11 +0.6 598,331 - cusA b0575 0.13 +0.0 598,331 - cusA b0575 0.13 +0.5 598,501 - cusA b0575 0.18 -0.2 598,530 + cusA b0575 0.19 +1.1 598,711 - cusA b0575 0.25 +0.6 598,711 - cusA b0575 0.25 -0.3 599,120 + cusA b0575 0.38 -1.0 599,213 - cusA b0575 0.41 +1.9 599,213 - cusA b0575 0.41 -1.5 599,243 + cusA b0575 0.42 +1.1 599,266 + cusA b0575 0.42 +0.6 599,294 + cusA b0575 0.43 +0.4 599,333 + cusA b0575 0.44 +0.3 599,538 - cusA b0575 0.51 +1.2 599,636 - cusA b0575 0.54 +0.3 599,657 - cusA b0575 0.55 -0.0 599,883 + cusA b0575 0.62 +1.6 599,883 + cusA b0575 0.62 -1.3 599,891 - cusA b0575 0.62 +0.4 599,952 + cusA b0575 0.64 -0.3 600,055 + cusA b0575 0.67 +0.7 600,063 - cusA b0575 0.68 +0.4 600,063 - cusA b0575 0.68 -0.1 600,121 + cusA b0575 0.69 +2.1 600,163 + cusA b0575 0.71 -2.9 600,220 - cusA b0575 0.73 -1.5 600,288 - cusA b0575 0.75 -0.2 600,426 + cusA b0575 0.79 +0.5 600,426 + cusA b0575 0.79 +0.7 600,517 - cusA b0575 0.82 -0.8 600,517 - cusA b0575 0.82 +1.6 600,743 - cusA b0575 0.89 -0.1 600,769 - +1.2 600,769 - -0.6 600,793 - +0.6 600,804 - -1.8 600,868 + +3.6 600,904 - +1.0 600,958 - -0.7 600,958 - +0.8 601,069 - +0.1 601,205 + -2.9 601,248 + +0.1 601,258 + +0.7 601,279 - -0.2 601,288 - +1.0 601,293 - -0.6 601,378 + pheP b0576 0.14 -2.8 601,441 - pheP b0576 0.19 +0.3 601,462 + pheP b0576 0.20 +0.9 601,552 + pheP b0576 0.27 +0.4 601,616 + pheP b0576 0.32 +0.5 601,624 + pheP b0576 0.32 -0.9 601,852 + pheP b0576 0.49 -0.4 601,852 + pheP b0576 0.49 +1.0 601,876 + pheP b0576 0.50 -0.4 601,876 + -0.1 601,957 + pheP b0576 0.56 -2.0 601,987 - pheP b0576 0.58 +1.4 601,988 - pheP b0576 0.59 +0.2
Or see this region's nucleotide sequence