Experiment: KB with Chrysophanol 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4011 and Psyr_4012 overlap by 1 nucleotides Psyr_4012 and Psyr_4013 overlap by 1 nucleotides
Psyr_4011: Psyr_4011 - Thiolase, at 4,778,415 to 4,779,614
_4011
Psyr_4012: Psyr_4012 - Glutaconate CoA-transferase, at 4,779,614 to 4,780,393
_4012
Psyr_4013: Psyr_4013 - Glutaconate CoA-transferase, at 4,780,393 to 4,781,250
_4013
Position (kb) 4779
4780
4781 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 4778.705 kb on + strand, within Psyr_4011 at 4779.167 kb on + strand, within Psyr_4011 at 4779.168 kb on - strand, within Psyr_4011 at 4779.581 kb on + strand at 4779.787 kb on + strand, within Psyr_4012 at 4779.787 kb on + strand, within Psyr_4012 at 4780.160 kb on + strand, within Psyr_4012 at 4780.248 kb on + strand, within Psyr_4012 at 4780.257 kb on - strand, within Psyr_4012 at 4780.257 kb on - strand, within Psyr_4012 at 4780.276 kb on + strand, within Psyr_4012 at 4780.277 kb on - strand, within Psyr_4012 at 4780.277 kb on - strand, within Psyr_4012 at 4780.386 kb on + strand at 4780.386 kb on + strand at 4780.387 kb on - strand at 4780.387 kb on - strand at 4780.387 kb on - strand at 4780.387 kb on - strand at 4780.394 kb on + strand at 4780.395 kb on - strand at 4780.395 kb on - strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.460 kb on + strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.461 kb on - strand at 4780.521 kb on - strand, within Psyr_4013 at 4780.521 kb on - strand, within Psyr_4013 at 4780.521 kb on - strand, within Psyr_4013 at 4780.541 kb on + strand, within Psyr_4013 at 4780.542 kb on - strand, within Psyr_4013 at 4780.545 kb on - strand, within Psyr_4013 at 4780.545 kb on - strand, within Psyr_4013 at 4780.556 kb on + strand, within Psyr_4013 at 4780.557 kb on - strand, within Psyr_4013 at 4780.919 kb on + strand, within Psyr_4013 at 4780.919 kb on + strand, within Psyr_4013 at 4780.919 kb on + strand, within Psyr_4013 at 4780.919 kb on + strand, within Psyr_4013 at 4780.920 kb on - strand, within Psyr_4013 at 4780.920 kb on - strand, within Psyr_4013 at 4780.920 kb on - strand, within Psyr_4013 at 4780.920 kb on - strand, within Psyr_4013 at 4780.920 kb on - strand, within Psyr_4013 at 4781.082 kb on - strand, within Psyr_4013 at 4781.082 kb on - strand, within Psyr_4013 at 4781.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Chrysophanol 10 mM remove 4,778,705 + Psyr_4011 0.24 +3.5 4,779,167 + Psyr_4011 0.63 +2.1 4,779,168 - Psyr_4011 0.63 -0.1 4,779,581 + +1.6 4,779,787 + Psyr_4012 0.22 -0.8 4,779,787 + Psyr_4012 0.22 -1.1 4,780,160 + Psyr_4012 0.70 -0.3 4,780,248 + Psyr_4012 0.81 +0.1 4,780,257 - Psyr_4012 0.82 +1.1 4,780,257 - Psyr_4012 0.82 +0.0 4,780,276 + Psyr_4012 0.85 -1.7 4,780,277 - Psyr_4012 0.85 +0.8 4,780,277 - Psyr_4012 0.85 +1.1 4,780,386 + +3.4 4,780,386 + -0.1 4,780,387 - +0.2 4,780,387 - +0.5 4,780,387 - +1.5 4,780,387 - +1.7 4,780,394 + +1.5 4,780,395 - -1.8 4,780,395 - +0.8 4,780,460 + -0.2 4,780,460 + -1.0 4,780,460 + +2.3 4,780,460 + +1.3 4,780,460 + -1.1 4,780,460 + -0.6 4,780,460 + +3.9 4,780,460 + +0.4 4,780,460 + -0.3 4,780,460 + -0.6 4,780,460 + -0.2 4,780,460 + -1.4 4,780,460 + -0.5 4,780,460 + +0.7 4,780,461 - -0.4 4,780,461 - -0.5 4,780,461 - -2.5 4,780,461 - +0.4 4,780,461 - -1.2 4,780,461 - +0.9 4,780,461 - +2.0 4,780,461 - +1.2 4,780,461 - +0.7 4,780,461 - -1.7 4,780,461 - +1.2 4,780,521 - Psyr_4013 0.15 -0.1 4,780,521 - Psyr_4013 0.15 +1.1 4,780,521 - Psyr_4013 0.15 -0.1 4,780,541 + Psyr_4013 0.17 +0.0 4,780,542 - Psyr_4013 0.17 +0.6 4,780,545 - Psyr_4013 0.18 +2.1 4,780,545 - Psyr_4013 0.18 +0.1 4,780,556 + Psyr_4013 0.19 +0.2 4,780,557 - Psyr_4013 0.19 -0.5 4,780,919 + Psyr_4013 0.61 -0.1 4,780,919 + Psyr_4013 0.61 +0.0 4,780,919 + Psyr_4013 0.61 +1.3 4,780,919 + Psyr_4013 0.61 +1.1 4,780,920 - Psyr_4013 0.61 +0.3 4,780,920 - Psyr_4013 0.61 -0.4 4,780,920 - Psyr_4013 0.61 -0.1 4,780,920 - Psyr_4013 0.61 -0.4 4,780,920 - Psyr_4013 0.61 -2.0 4,781,082 - Psyr_4013 0.80 +1.4 4,781,082 - Psyr_4013 0.80 -0.1 4,781,321 - +0.0
Or see this region's nucleotide sequence