Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1189

Experiment: KB with Chrysophanol 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1188 and Psyr_1189 are separated by 219 nucleotides Psyr_1188: Psyr_1188 - type III effector protein AvrE1, at 1,343,119 to 1,348,479 _1188 Psyr_1189: Psyr_1189 - SLT:MLTD_N, at 1,348,699 to 1,350,222 _1189 Position (kb) 1348 1349 1350 1351Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1347.729 kb on + strand, within Psyr_1188at 1347.796 kb on - strand, within Psyr_1188at 1347.811 kb on - strand, within Psyr_1188at 1347.880 kb on + strand, within Psyr_1188at 1347.881 kb on - strand, within Psyr_1188at 1348.096 kb on + strandat 1348.097 kb on - strandat 1348.097 kb on - strandat 1348.097 kb on - strandat 1348.097 kb on - strandat 1348.180 kb on - strandat 1348.260 kb on + strandat 1348.633 kb on - strandat 1348.921 kb on + strand, within Psyr_1189at 1348.921 kb on + strand, within Psyr_1189at 1348.921 kb on + strand, within Psyr_1189at 1348.922 kb on - strand, within Psyr_1189at 1348.995 kb on + strand, within Psyr_1189at 1349.068 kb on + strand, within Psyr_1189at 1349.149 kb on + strand, within Psyr_1189at 1349.149 kb on + strand, within Psyr_1189at 1349.149 kb on + strand, within Psyr_1189at 1349.150 kb on - strand, within Psyr_1189at 1349.150 kb on - strand, within Psyr_1189at 1349.150 kb on - strand, within Psyr_1189at 1349.242 kb on - strand, within Psyr_1189at 1349.245 kb on + strand, within Psyr_1189at 1349.246 kb on - strand, within Psyr_1189at 1349.293 kb on + strand, within Psyr_1189at 1349.351 kb on - strand, within Psyr_1189at 1349.455 kb on + strand, within Psyr_1189at 1349.455 kb on + strand, within Psyr_1189at 1349.455 kb on + strand, within Psyr_1189at 1349.455 kb on + strand, within Psyr_1189at 1349.455 kb on + strand, within Psyr_1189at 1349.456 kb on - strand, within Psyr_1189at 1349.456 kb on - strand, within Psyr_1189at 1349.543 kb on - strand, within Psyr_1189at 1349.607 kb on - strand, within Psyr_1189at 1349.718 kb on + strand, within Psyr_1189at 1350.012 kb on - strand, within Psyr_1189at 1350.012 kb on - strand, within Psyr_1189at 1350.012 kb on - strand, within Psyr_1189at 1350.012 kb on - strand, within Psyr_1189at 1350.106 kb on + strandat 1350.106 kb on + strandat 1350.106 kb on + strandat 1350.106 kb on + strandat 1350.106 kb on + strandat 1350.107 kb on - strandat 1350.107 kb on - strandat 1350.107 kb on - strandat 1350.107 kb on - strandat 1350.348 kb on - strandat 1350.358 kb on - strandat 1350.358 kb on - strandat 1350.388 kb on + strandat 1350.389 kb on - strandat 1350.389 kb on - strandat 1350.389 kb on - strandat 1350.401 kb on - strandat 1350.429 kb on - strandat 1350.436 kb on + strandat 1350.440 kb on + strandat 1350.440 kb on + strandat 1350.441 kb on - strandat 1350.513 kb on + strandat 1350.513 kb on + strandat 1350.514 kb on - strandat 1350.514 kb on - strandat 1350.514 kb on - strandat 1350.514 kb on - strandat 1350.515 kb on + strandat 1350.516 kb on - strandat 1350.516 kb on - strandat 1350.516 kb on - strandat 1350.540 kb on - strandat 1350.563 kb on - strandat 1350.563 kb on - strandat 1350.563 kb on - strandat 1350.585 kb on + strandat 1350.735 kb on + strandat 1350.736 kb on - strandat 1350.937 kb on - strandat 1350.992 kb on + strandat 1351.094 kb on - strandat 1351.109 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Chrysophanol 10 mM
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1,347,729 + Psyr_1188 0.86 -0.6
1,347,796 - Psyr_1188 0.87 -0.8
1,347,811 - Psyr_1188 0.88 -0.2
1,347,880 + Psyr_1188 0.89 +0.5
1,347,881 - Psyr_1188 0.89 +0.3
1,348,096 + -0.2
1,348,097 - -0.9
1,348,097 - +1.0
1,348,097 - -0.3
1,348,097 - -0.1
1,348,180 - -0.3
1,348,260 + -1.3
1,348,633 - +0.8
1,348,921 + Psyr_1189 0.15 -0.1
1,348,921 + Psyr_1189 0.15 -0.8
1,348,921 + Psyr_1189 0.15 +0.3
1,348,922 - Psyr_1189 0.15 -1.8
1,348,995 + Psyr_1189 0.19 -0.9
1,349,068 + Psyr_1189 0.24 +0.6
1,349,149 + Psyr_1189 0.30 -0.3
1,349,149 + Psyr_1189 0.30 -1.4
1,349,149 + Psyr_1189 0.30 +0.7
1,349,150 - Psyr_1189 0.30 -0.9
1,349,150 - Psyr_1189 0.30 +0.4
1,349,150 - Psyr_1189 0.30 -2.7
1,349,242 - Psyr_1189 0.36 -0.8
1,349,245 + Psyr_1189 0.36 +3.2
1,349,246 - Psyr_1189 0.36 +0.3
1,349,293 + Psyr_1189 0.39 -0.7
1,349,351 - Psyr_1189 0.43 +0.4
1,349,455 + Psyr_1189 0.50 +0.2
1,349,455 + Psyr_1189 0.50 -0.2
1,349,455 + Psyr_1189 0.50 -0.8
1,349,455 + Psyr_1189 0.50 +0.4
1,349,455 + Psyr_1189 0.50 +0.0
1,349,456 - Psyr_1189 0.50 +2.7
1,349,456 - Psyr_1189 0.50 +0.0
1,349,543 - Psyr_1189 0.55 -0.1
1,349,607 - Psyr_1189 0.60 +0.6
1,349,718 + Psyr_1189 0.67 +0.3
1,350,012 - Psyr_1189 0.86 +1.7
1,350,012 - Psyr_1189 0.86 -0.0
1,350,012 - Psyr_1189 0.86 -0.1
1,350,012 - Psyr_1189 0.86 +0.4
1,350,106 + -0.3
1,350,106 + -2.6
1,350,106 + -0.4
1,350,106 + +0.2
1,350,106 + +0.9
1,350,107 - -0.9
1,350,107 - -1.1
1,350,107 - -0.7
1,350,107 - -1.6
1,350,348 - -1.2
1,350,358 - -0.4
1,350,358 - +0.3
1,350,388 + +2.1
1,350,389 - +1.2
1,350,389 - +2.7
1,350,389 - +2.7
1,350,401 - +0.6
1,350,429 - +0.3
1,350,436 + -0.1
1,350,440 + -2.1
1,350,440 + -1.4
1,350,441 - -0.3
1,350,513 + +0.3
1,350,513 + +0.1
1,350,514 - +2.5
1,350,514 - +0.2
1,350,514 - -1.2
1,350,514 - +1.6
1,350,515 + -1.3
1,350,516 - +0.9
1,350,516 - +0.6
1,350,516 - -1.1
1,350,540 - +2.7
1,350,563 - +1.2
1,350,563 - +2.4
1,350,563 - -0.2
1,350,585 + +2.2
1,350,735 + -0.0
1,350,736 - -0.7
1,350,937 - -0.3
1,350,992 + -1.3
1,351,094 - +0.2
1,351,109 - -0.8

Or see this region's nucleotide sequence